[INFO] fetching crate chemfiles 0.10.2... [INFO] documenting chemfiles-0.10.2 against 1.61.0 for beta-1.62-rustdoc-1 [INFO] extracting crate chemfiles 0.10.2 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate chemfiles 0.10.2 on toolchain 1.61.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate chemfiles 0.10.2 [INFO] finished tweaking crates.io crate chemfiles 0.10.2 [INFO] tweaked toml for crates.io crate chemfiles 0.10.2 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate chemfiles 0.10.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.46 [INFO] [stderr] Downloaded chemfiles-sys v0.10.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 761c9f48ae418656b77b3ce0bf569160023b30ff9e37477a68318c7032dec4d8 [INFO] running `Command { std: "docker" "start" "-a" "761c9f48ae418656b77b3ce0bf569160023b30ff9e37477a68318c7032dec4d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "761c9f48ae418656b77b3ce0bf569160023b30ff9e37477a68318c7032dec4d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "761c9f48ae418656b77b3ce0bf569160023b30ff9e37477a68318c7032dec4d8", kill_on_drop: false }` [INFO] [stdout] 761c9f48ae418656b77b3ce0bf569160023b30ff9e37477a68318c7032dec4d8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e65a7971a823a588e157a6d5575aae4b4774fdbdb30215657c9fed233c634628 [INFO] running `Command { std: "docker" "start" "-a" "e65a7971a823a588e157a6d5575aae4b4774fdbdb30215657c9fed233c634628", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.72 [INFO] [stderr] Compiling libc v0.2.107 [INFO] [stderr] Compiling cmake v0.1.46 [INFO] [stderr] Compiling chemfiles-sys v0.10.2 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.2` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-9d4e184f8121d529/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/." "-DCHEMFILES_VERSION=0.10.2" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=16cf6f38f817e555d0393db2726ab80b3b6ff1b2d8f884478f938eda9a452371" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-c3c5e8910bf8f23b/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.2/chemfiles-static.v0.10.2.x86_64-linux-gnu.tar.gz [INFO] [stderr] -- failed to download prebuilt chemfiles, building from sources [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking xdrfile sources [INFO] [stderr] -- Unpacking gemmi sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-c3c5e8910bf8f23b/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--parallel" "96" [INFO] [stderr] Scanning dependencies of target bzip2 [INFO] [stderr] Scanning dependencies of target xdrfile [INFO] [stderr] Scanning dependencies of target pugixml [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] [ 0%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/huffman.c.o [INFO] [stderr] [ 0%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inffast.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_xtc.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/crctable.c.o [INFO] [stderr] [ 6%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/deflate.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_trr.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/decompress.c.o [INFO] [stderr] [ 1%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/os.cc.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzread.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/randtable.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzlib.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzwrite.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile.c.o [INFO] [stderr] [ 1%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/crc32.c.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inflate.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/infback.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/uncompr.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/bzlib.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/compress.c.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inftrees.c.o [INFO] [stderr] [ 12%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/trees.c.o [INFO] [stderr] [ 12%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/zutil.c.o [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 13%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/psfplugin.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o [INFO] [stderr] [ 14%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 15%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 15%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffmem.c.o [INFO] [stderr] [ 15%] Building C object 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chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/attr.c.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/lookup3.c.o [INFO] [stderr] [ 20%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc3dispatch.c.o [INFO] [stderr] [ 22%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/ncx.c.o [INFO] [stderr] [ 23%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/widemuldiv.c.o [INFO] [stderr] [ 24%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc3internal.c.o [INFO] [stderr] [ 24%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o [INFO] [stderr] [ 24%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/crc32.c.o [INFO] [stderr] [ 26%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/putget.c.o [INFO] [stderr] [ 27%] Building C object 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Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] make: warning: -j96 forced in submake: resetting jobserver mode. [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/misc.cpp:14: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:89: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o] Error 1 [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/cell.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/misc.cpp: In function 'chfl_status chfl_formats_list(chfl_format_metadata**, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/misc.cpp:70:54: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 70 | *count = static_cast(formats.size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:219: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:232: chemfiles/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:115: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:284: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/misc.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:258: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/cell.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:414: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/MemoryFile.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:401: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/MemoryBuffer.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:180: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:167: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:102: chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:154: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:778: chemfiles/CMakeFiles/chemfiles_objects.dir/src/periodic_table.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:765: chemfiles/CMakeFiles/chemfiles_objects.dir/src/pdb_connectivity.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:336: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/shared_allocator.cpp.o] Error 1 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:375: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/Bz2File.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:141: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatMetadata.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:713: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/XYZ.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:687: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/Tinker.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:830: chemfiles/CMakeFiles/chemfiles_objects.dir/src/selections/parser.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:661: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/TNG.cpp.o] Error 1 [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/selections/NumericValues.cpp: In member function 'size_t chemfiles::NumericValues::capacity() const': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/selections/NumericValues.cpp:75:44: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 75 | return static_cast(capacity); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/selections/NumericValues.cpp: In member function 'size_t chemfiles::NumericValues::size() const': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/selections/NumericValues.cpp:90:40: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 90 | return static_cast(size); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:791: chemfiles/CMakeFiles/chemfiles_objects.dir/src/selections/NumericValues.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:206: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:635: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/SDF.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:427: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/NcFile.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:245: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/atom.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:466: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/XDRFile.cpp.o] Error 1 [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/files/XzFile.cpp: In member function 'virtual void chemfiles::XzFile::seek(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/files/XzFile.cpp:142:65: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 142 | auto count = this->read(buffer, static_cast(position)); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/property.cpp:11: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/topology.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:479: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/XzFile.cpp.o] Error 1 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:76: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:440: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/PlainFile.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:739: chemfiles/CMakeFiles/chemfiles_objects.dir/src/guess_format.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:596: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/MOL2.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:193: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/residue.cpp:10: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/trajectory.cpp:10: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:349: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/topology.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/frame.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/formats/TRR.cpp: In member function 'virtual size_t chemfiles::TRRFormat::nsteps()': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/formats/TRR.cpp:67:72: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 67 | size_t TRRFormat::nsteps() { return static_cast(file_.nframes()); } [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:544: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/GRO.cpp.o] Error 1 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:726: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/mmCIF.cpp.o] Error 1 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:674: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/TRR.cpp.o] Error 1 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:700: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/XTC.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:297: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/property.cpp.o] Error 1 [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/selection.cpp:11: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/formats/Molfile.cpp: In function 'void hash_combine(std::size_t&)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/formats/Molfile.cpp:78:39: warning: unused parameter 'seed' [-Wunused-parameter] [INFO] [stderr] 78 | inline void hash_combine(std::size_t& seed) { } [INFO] [stderr] | ~~~~~~~~~~~~~^~~~ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/residue.cpp:90:55: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 90 | *count = static_cast(residue->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms(const CHFL_RESIDUE*, uint64_t*, uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/residue.cpp:105:51: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 105 | atoms[i] = static_cast(index); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_properties_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/residue.cpp:151:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 151 | *count = static_cast(residue->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:622: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/PDB.cpp.o] Error 1 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:492: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/AmberNetCDF.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:453: chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/TNGFile.cpp.o] Error 1 [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_atoms_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/frame.cpp:51:53: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 51 | *count = static_cast(frame->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_properties_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/src/capi/frame.cpp:214:66: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 214 | *count = static_cast(frame->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/chemfiles/include/chemfiles/capi/utils.hpp:74:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 74 | _instructions_ \ [INFO] [stderr] | ^~~~~~~~~~~~~~ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:362: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/trajectory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:609: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/Molfile.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:310: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/residue.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:531: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/CSSR.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:271: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/frame.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:570: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSTrajectory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:505: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/CIF.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:332: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.46/src/lib.rs:974:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d911e501ed - std::backtrace_rs::backtrace::libunwind::trace::h22893a5306c091b4 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55d911e501ed - std::backtrace_rs::backtrace::trace_unsynchronized::h29c3bc6f9e91819d [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55d911e501ed - std::sys_common::backtrace::_print_fmt::he497d8a0ec903793 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x55d911e501ed - ::fmt::h9c2a9d2774d81873 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x55d911e6ff5c - core::fmt::write::hba4337c43d992f49 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/fmt/mod.rs:1194:17 [INFO] [stderr] 5: 0x55d911e4cd01 - std::io::Write::write_fmt::heb73de6e02cfabed [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/io/mod.rs:1655:15 [INFO] [stderr] 6: 0x55d911e51d95 - std::sys_common::backtrace::_print::h63c8b24acdd8e8ce [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x55d911e51d95 - std::sys_common::backtrace::print::h426700d6240cdcc2 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x55d911e51d95 - std::panicking::default_hook::{{closure}}::hc9a76eed0b18f82b [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x55d911e51a49 - std::panicking::default_hook::h2e88d02087fae196 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x55d911e522e2 - std::panicking::rust_panic_with_hook::habfdcc2e90f9fd4c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x55d911e521c7 - std::panicking::begin_panic_handler::{{closure}}::he054b2a83a51d2cd [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x55d911e506a4 - std::sys_common::backtrace::__rust_end_short_backtrace::ha48b94ab49b30915 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x55d911e51ef9 - rust_begin_unwind [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x55d911dc04d3 - core::panicking::panic_fmt::h366d3a309ae17c94 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x55d911dcb8ad - cmake::fail::h708ff256093feadc [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.46/src/lib.rs:974:5 [INFO] [stderr] 16: 0x55d911dcb2e5 - cmake::run::h0f44f35c0074d092 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.46/src/lib.rs:952:9 [INFO] [stderr] 17: 0x55d911dc8500 - cmake::Config::build::h5410b877c199146a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.46/src/lib.rs:832:9 [INFO] [stderr] 18: 0x55d911dc11d8 - build_script_build::build_chemfiles::h03ef791ddec878cc [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/build.rs:33:19 [INFO] [stderr] 19: 0x55d911dc0e1e - build_script_build::main::h700acadfe48e4447 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.10.2/build.rs:10:19 [INFO] [stderr] 20: 0x55d911dc365b - core::ops::function::FnOnce::call_once::h65b4a289a5158605 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 21: 0x55d911dc1e9e - std::sys_common::backtrace::__rust_begin_short_backtrace::h5e8a8b63e2caab98 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 22: 0x55d911dc1cd1 - std::rt::lang_start::{{closure}}::h1f14cda25700be23 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:145:18 [INFO] [stderr] 23: 0x55d911e4872e - core::ops::function::impls:: for &F>::call_once::had4f69b3aefb47a8 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 24: 0x55d911e4872e - std::panicking::try::do_call::hf2ad5355fcafe775 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 25: 0x55d911e4872e - std::panicking::try::h0a63ac363423e61e [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 26: 0x55d911e4872e - std::panic::catch_unwind::h18088edcecb8693a [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panic.rs:137:14 [INFO] [stderr] 27: 0x55d911e4872e - std::rt::lang_start_internal::{{closure}}::ha7dad166dc711761 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:128:48 [INFO] [stderr] 28: 0x55d911e4872e - std::panicking::try::do_call::hda0c61bf3a57d6e6 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 29: 0x55d911e4872e - std::panicking::try::hbc940e68560040a9 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 30: 0x55d911e4872e - std::panic::catch_unwind::haed0df2aeb3fa368 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panic.rs:137:14 [INFO] [stderr] 31: 0x55d911e4872e - std::rt::lang_start_internal::h9c06694362b5b80c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:128:20 [INFO] [stderr] 32: 0x55d911dc1ca0 - std::rt::lang_start::h7042a5e65d363163 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:144:17 [INFO] [stderr] 33: 0x55d911dc19dc - main [INFO] [stderr] 34: 0x7f18b4eb50b3 - __libc_start_main [INFO] [stderr] 35: 0x55d911dc071e - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "e65a7971a823a588e157a6d5575aae4b4774fdbdb30215657c9fed233c634628", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e65a7971a823a588e157a6d5575aae4b4774fdbdb30215657c9fed233c634628", kill_on_drop: false }` [INFO] [stdout] e65a7971a823a588e157a6d5575aae4b4774fdbdb30215657c9fed233c634628