[INFO] cloning repository https://github.com/tolkit/fasta_windows
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tolkit/fasta_windows" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Ffasta_windows", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Ffasta_windows'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4fc6e3f5a3ba5d2d7c1b9f1dbd083da0ce5f6436
[INFO] documenting tolkit/fasta_windows against 1.61.0 for beta-1.62-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Ffasta_windows" "/workspace/builds/worker-15/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-15/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/tolkit/fasta_windows on toolchain 1.61.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/tolkit/fasta_windows
[INFO] finished tweaking git repo https://github.com/tolkit/fasta_windows
[INFO] tweaked toml for git repo https://github.com/tolkit/fasta_windows written to /workspace/builds/worker-15/source/Cargo.toml
[INFO] crate git repo https://github.com/tolkit/fasta_windows already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded number_prefix v0.4.0
[INFO] [stderr]   Downloaded indicatif v0.16.0
[INFO] [stderr]   Downloaded bio v0.32.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0258cb7ac67db9a67f2dc16f309bf9849bd1d3690dc912b247f1966c7b03dde5
[INFO] running `Command { std: "docker" "start" "-a" "0258cb7ac67db9a67f2dc16f309bf9849bd1d3690dc912b247f1966c7b03dde5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0258cb7ac67db9a67f2dc16f309bf9849bd1d3690dc912b247f1966c7b03dde5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0258cb7ac67db9a67f2dc16f309bf9849bd1d3690dc912b247f1966c7b03dde5", kill_on_drop: false }`
[INFO] [stdout] 0258cb7ac67db9a67f2dc16f309bf9849bd1d3690dc912b247f1966c7b03dde5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ca6f40a6cf387ae52bbee77cb8cc81a010213f9b63ac7d6da42752b91348a816
[INFO] running `Command { std: "docker" "start" "-a" "ca6f40a6cf387ae52bbee77cb8cc81a010213f9b63ac7d6da42752b91348a816", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling syn v1.0.67
[INFO] [stderr]    Compiling libc v0.2.81
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking regex-syntax v0.6.21
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling rayon-core v1.9.0
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.4
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.118
[INFO] [stderr]    Compiling serde v1.0.118
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking aho-corasick v0.7.15
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking os_str_bytes v6.0.0
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking itertools v0.10.1
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking regex v1.4.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling quote v1.0.8
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking ndarray v0.13.1
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking terminal_size v0.1.17
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crossbeam-epoch v0.9.4
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]     Checking clap v3.1.8
[INFO] [stderr]     Checking console v0.14.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking indicatif v0.16.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking csv v1.1.5
[INFO] [stderr]  Documenting fasta_windows v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 48.78s
[INFO] running `Command { std: "docker" "inspect" "ca6f40a6cf387ae52bbee77cb8cc81a010213f9b63ac7d6da42752b91348a816", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ca6f40a6cf387ae52bbee77cb8cc81a010213f9b63ac7d6da42752b91348a816", kill_on_drop: false }`
[INFO] [stdout] ca6f40a6cf387ae52bbee77cb8cc81a010213f9b63ac7d6da42752b91348a816
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "rustdoc" "--lib" "-Zrustdoc-map" "--frozen" "--message-format=json" "--" "-Z" "unstable-options" "--document-private-items", kill_on_drop: false }`
[INFO] [stdout] fbabd8acabe6d7e289a9ba9af2b6dad1fb4844e3694ee3854bbf6d1b728be69a
[INFO] running `Command { std: "docker" "start" "-a" "fbabd8acabe6d7e289a9ba9af2b6dad1fb4844e3694ee3854bbf6d1b728be69a", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.67
[INFO] [stderr]    Compiling libc v0.2.81
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.118
[INFO] [stderr]    Compiling serde v1.0.118
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]     Checking regex-syntax v0.6.21
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling rayon-core v1.9.0
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking itertools v0.10.1
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling crossbeam-utils v0.8.4
[INFO] [stderr]    Compiling memoffset v0.6.3
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v0.7.15
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking os_str_bytes v6.0.0
[INFO] [stderr]    Compiling quote v1.0.8
[INFO] [stderr]     Checking terminal_size v0.1.17
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking clap v3.1.8
[INFO] [stderr]     Checking regex v1.4.2
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking crossbeam-epoch v0.9.4
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking console v0.14.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.0
[INFO] [stderr]     Checking indicatif v0.16.0
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking csv v1.1.5
[INFO] [stderr]  Documenting fasta_windows v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 20.18s
[INFO] running `Command { std: "docker" "inspect" "fbabd8acabe6d7e289a9ba9af2b6dad1fb4844e3694ee3854bbf6d1b728be69a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fbabd8acabe6d7e289a9ba9af2b6dad1fb4844e3694ee3854bbf6d1b728be69a", kill_on_drop: false }`
[INFO] [stdout] fbabd8acabe6d7e289a9ba9af2b6dad1fb4844e3694ee3854bbf6d1b728be69a