[INFO] cloning repository https://github.com/rhysnewell/Kallisto_Indexer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/rhysnewell/Kallisto_Indexer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] fb2da531c4e51b75f98c9782bc949a5d3d711a18
[INFO] documenting rhysnewell/Kallisto_Indexer against 1.61.0 for beta-1.62-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer" "/workspace/builds/worker-12/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/rhysnewell/Kallisto_Indexer on toolchain 1.61.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] finished tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] tweaked toml for git repo https://github.com/rhysnewell/Kallisto_Indexer written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate git repo https://github.com/rhysnewell/Kallisto_Indexer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-htslib`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git repository `https://github.com/alexcrichton/bzip2-rs.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fs-utils v1.1.0
[INFO] [stderr]   Downloaded clang-sys v0.22.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded ndarray v0.9.1
[INFO] [stderr]   Downloaded itertools-num v0.1.2
[INFO] [stderr]   Downloaded ieee754 v0.2.2
[INFO] [stderr]   Downloaded matrixmultiply v0.1.14
[INFO] [stderr]   Downloaded lzma-sys v0.1.10
[INFO] [stderr]   Downloaded libz-sys v1.0.23
[INFO] [stderr]   Downloaded filetime v0.2.1
[INFO] [stderr]   Downloaded bv v0.7.4
[INFO] [stderr]   Downloaded bio-types v0.3.0
[INFO] [stderr]   Downloaded bio v0.20.3
[INFO] [stderr]   Downloaded bindgen v0.36.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 74b54d27f679a184c04b558b7e0078547aac714655aeee08d5fa6b9f8bc3cf25
[INFO] running `Command { std: "docker" "start" "-a" "74b54d27f679a184c04b558b7e0078547aac714655aeee08d5fa6b9f8bc3cf25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "74b54d27f679a184c04b558b7e0078547aac714655aeee08d5fa6b9f8bc3cf25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "74b54d27f679a184c04b558b7e0078547aac714655aeee08d5fa6b9f8bc3cf25", kill_on_drop: false }`
[INFO] [stdout] 74b54d27f679a184c04b558b7e0078547aac714655aeee08d5fa6b9f8bc3cf25
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5d2e455b5975c1ec08ed45d50785c03b624d32d775b82302781f7f6037aa5b9f
[INFO] running `Command { std: "docker" "start" "-a" "5d2e455b5975c1ec08ed45d50785c03b624d32d775b82302781f7f6037aa5b9f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.43
[INFO] [stderr]    Compiling proc-macro2 v0.4.19
[INFO] [stderr]    Compiling cc v1.0.25
[INFO] [stderr]    Compiling serde v1.0.79
[INFO] [stderr]     Checking cfg-if v0.1.5
[INFO] [stderr]    Compiling num-traits v0.2.6
[INFO] [stderr]    Compiling regex v1.0.5
[INFO] [stderr]    Compiling ucd-util v0.1.1
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling pkg-config v0.3.14
[INFO] [stderr]    Compiling utf8-ranges v1.0.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling bitflags v1.0.4
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling matrixmultiply v0.1.14
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]     Checking either v1.5.0
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]    Compiling num-integer v0.1.39
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]     Checking rawpointer v0.1.0
[INFO] [stderr]     Checking unicode-normalization v0.1.7
[INFO] [stderr]     Checking quick-error v1.2.2
[INFO] [stderr]     Checking rand_core v0.2.1
[INFO] [stderr]     Checking byteorder v1.2.6
[INFO] [stderr]     Checking percent-encoding v1.0.1
[INFO] [stderr]     Checking bit-vec v0.4.4
[INFO] [stderr]     Checking lazy_static v0.2.11
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling nix v0.11.0
[INFO] [stderr]     Checking bitflags v0.9.1
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]     Checking remove_dir_all v0.5.1
[INFO] [stderr]     Checking approx v0.1.1
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]    Compiling memchr v2.1.0
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling log v0.4.5
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking unreachable v1.0.0
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling filetime v0.2.1
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]     Checking rand v0.5.5
[INFO] [stderr] error: could not compile `cc`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name cc /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cc-1.0.25/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 -C metadata=5286682129debe10 -C extra-filename=-5286682129debe10 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --cap-lints allow` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `proc-macro2`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name proc_macro2 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/proc-macro2-0.3.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 -C metadata=ae347b1e60aa67ba -C extra-filename=-ae347b1e60aa67ba --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern unicode_xid=/opt/rustwide/target/debug/deps/libunicode_xid-123b1a1a47f71896.rmeta --cap-lints allow` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "5d2e455b5975c1ec08ed45d50785c03b624d32d775b82302781f7f6037aa5b9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5d2e455b5975c1ec08ed45d50785c03b624d32d775b82302781f7f6037aa5b9f", kill_on_drop: false }`
[INFO] [stdout] 5d2e455b5975c1ec08ed45d50785c03b624d32d775b82302781f7f6037aa5b9f