[INFO] cloning repository https://github.com/malthesr/winsfs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/malthesr/winsfs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmalthesr%2Fwinsfs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmalthesr%2Fwinsfs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b7dba737fb6e2bea9d5c0bb8ecb4203fc770d1bb
[INFO] documenting malthesr/winsfs against 1.61.0 for beta-1.62-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmalthesr%2Fwinsfs" "/workspace/builds/worker-1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/malthesr/winsfs on toolchain 1.61.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/malthesr/winsfs
[INFO] finished tweaking git repo https://github.com/malthesr/winsfs
[INFO] tweaked toml for git repo https://github.com/malthesr/winsfs written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate git repo https://github.com/malthesr/winsfs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/malthesr/angsd-io.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded libdeflater v0.7.5
[INFO] [stderr]   Downloaded libdeflate-sys v0.7.5
[INFO] [stderr]   Downloaded noodles-bgzf v0.10.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] bc4d71510e9790be9cd6eb8e45d9fa9996053076ef65751ea1c290707bf515d1
[INFO] running `Command { std: "docker" "start" "-a" "bc4d71510e9790be9cd6eb8e45d9fa9996053076ef65751ea1c290707bf515d1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bc4d71510e9790be9cd6eb8e45d9fa9996053076ef65751ea1c290707bf515d1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bc4d71510e9790be9cd6eb8e45d9fa9996053076ef65751ea1c290707bf515d1", kill_on_drop: false }`
[INFO] [stdout] bc4d71510e9790be9cd6eb8e45d9fa9996053076ef65751ea1c290707bf515d1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3c5900948a4be4d880789023887597f66e324eb3a775b137cfdcf3b73e97b5fd
[INFO] running `Command { std: "docker" "start" "-a" "3c5900948a4be4d880789023887597f66e324eb3a775b137cfdcf3b73e97b5fd", kill_on_drop: false }`
[INFO] [stderr] warning: output filename collision.
[INFO] [stderr] The lib target `winsfs` in package `winsfs v0.1.0 (/opt/rustwide/workdir/winsfs)` has the same output filename as the bin target `winsfs` in package `cli v0.5.0 (/opt/rustwide/workdir/cli)`.
[INFO] [stderr] Colliding filename is: /opt/rustwide/target/doc/winsfs/index.html
[INFO] [stderr] The targets should have unique names.
[INFO] [stderr] This is a known bug where multiple crates with the same name use
[INFO] [stderr] the same path; see <https://github.com/rust-lang/cargo/issues/6313>.
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling crossbeam-utils v0.8.8
[INFO] [stderr]    Compiling proc-macro2 v1.0.39
[INFO] [stderr]    Compiling unicode-ident v1.0.0
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling syn v1.0.95
[INFO] [stderr]     Checking os_str_bytes v6.1.0
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling indexmap v1.8.2
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]     Checking miniz_oxide v0.5.3
[INFO] [stderr]     Checking clap_lex v0.2.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.4
[INFO] [stderr]     Checking simple_logger v2.1.0
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]     Checking crossbeam-deque v0.8.1
[INFO] [stderr]     Checking getrandom v0.2.6
[INFO] [stderr]     Checking num_cpus v1.13.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking libdeflater v0.7.5
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking noodles-bgzf v0.10.0
[INFO] [stderr]     Checking angsd-io v0.1.0 (https://github.com/malthesr/angsd-io.git?rev=62a4695#62a4695b)
[INFO] [stderr]     Checking winsfs v0.1.0 (/opt/rustwide/workdir/winsfs)
[INFO] [stderr]  Documenting winsfs v0.1.0 (/opt/rustwide/workdir/winsfs)
[INFO] [stderr]    Compiling clap_derive v3.1.18
[INFO] [stderr]     Checking clap v3.1.18
[INFO] [stderr]  Documenting cli v0.5.0 (/opt/rustwide/workdir/cli)
[INFO] [stdout] warning: unresolved link to `prefix`
[INFO] [stdout]   --> cli/src/cli/log_likelihood.rs:24:56
[INFO] [stdout]    |
[INFO] [stdout] 24 |     /// For each set of SAF files (conventially named [prefix].{saf.idx,saf.pos.gz,saf.gz}),
[INFO] [stdout]    |                                                        ^^^^^^ no item named `prefix` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `prefix`
[INFO] [stdout]   --> cli/src/cli/shuffle.rs:24:56
[INFO] [stdout]    |
[INFO] [stdout] 24 |     /// For each set of SAF files (conventially named [prefix].{saf.idx,saf.pos.gz,saf.gz}),
[INFO] [stdout]    |                                                        ^^^^^^ no item named `prefix` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `prefix`
[INFO] [stdout]   --> cli/src/cli.rs:29:56
[INFO] [stdout]    |
[INFO] [stdout] 29 |     /// For each set of SAF files (conventially named [prefix].{saf.idx,saf.pos.gz,saf.gz}),
[INFO] [stdout]    |                                                        ^^^^^^ no item named `prefix` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 18.08s
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "3c5900948a4be4d880789023887597f66e324eb3a775b137cfdcf3b73e97b5fd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3c5900948a4be4d880789023887597f66e324eb3a775b137cfdcf3b73e97b5fd", kill_on_drop: false }`
[INFO] [stdout] 3c5900948a4be4d880789023887597f66e324eb3a775b137cfdcf3b73e97b5fd