[INFO] cloning repository https://github.com/MarcoMernberger/mbf_bam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MarcoMernberger/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 34e16cfeccb834cd3fa04ebf52845b699f518678 [INFO] documenting MarcoMernberger/mbf_bam against 1.61.0 for beta-1.62-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/MarcoMernberger/mbf_bam on toolchain 1.61.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/MarcoMernberger/mbf_bam [INFO] finished tweaking git repo https://github.com/MarcoMernberger/mbf_bam [INFO] tweaked toml for git repo https://github.com/MarcoMernberger/mbf_bam written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/MarcoMernberger/mbf_bam already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded clang-sys v0.28.0 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded ndarray v0.12.1 [INFO] [stderr] Downloaded pyo3-derive-backend v0.6.0 [INFO] [stderr] Downloaded bio v0.25.0 [INFO] [stderr] Downloaded ctor v0.1.8 [INFO] [stderr] Downloaded pyo3cls v0.6.0 [INFO] [stderr] Downloaded fs-utils v1.1.0 [INFO] [stderr] Downloaded rust-htslib v0.24.0 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] [stderr] Downloaded pyo3 v0.6.0 [INFO] [stderr] Downloaded csv v1.0.6 [INFO] [stderr] Downloaded lzma-sys v0.1.14 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 36371911795c095243ccc1a2220836696e769dab81fbb828edd479f4f9ea0728 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "36371911795c095243ccc1a2220836696e769dab81fbb828edd479f4f9ea0728", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "36371911795c095243ccc1a2220836696e769dab81fbb828edd479f4f9ea0728", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "36371911795c095243ccc1a2220836696e769dab81fbb828edd479f4f9ea0728", kill_on_drop: false }` [INFO] [stdout] 36371911795c095243ccc1a2220836696e769dab81fbb828edd479f4f9ea0728 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] caedcbe6089e59769c2bf29dab536ce0c1d822f09ed45b6db3db32f7896c4b5b [INFO] running `Command { std: "docker" "start" "-a" "caedcbe6089e59769c2bf29dab536ce0c1d822f09ed45b6db3db32f7896c4b5b", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling proc-macro2 v0.4.27 [INFO] [stderr] Compiling syn v0.15.30 [INFO] [stderr] Compiling cc v1.0.35 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling byteorder v1.3.1 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Checking either v1.5.2 [INFO] [stderr] Compiling cfg-if v0.1.7 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.1 [INFO] [stderr] Compiling termcolor v1.0.4 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Checking smallvec v0.6.9 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking spin v0.5.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Checking crossbeam-utils v0.2.2 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling backtrace v0.3.15 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking itertools v0.8.0 [INFO] [stderr] Checking unicode-normalization v0.1.8 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling proc-macro-hack v0.4.1 [INFO] [stderr] Checking bit-set v0.5.1 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Checking crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Checking crossbeam-deque v0.2.0 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling backtrace-sys v0.1.28 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking num_cpus v1.10.0 [INFO] [stderr] Checking flate2 v1.0.13 [INFO] [stderr] Checking num-integer v0.1.39 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Checking csv-core v0.1.5 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Checking regex v1.3.1 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling env_logger v0.6.1 [INFO] [stderr] Compiling pyo3 v0.6.0 [INFO] [stderr] error: failed to run custom build command for `pyo3 v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/pyo3-ea5729773cba4732/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] Error: pyo3 requires a nightly or dev version of Rust. [INFO] [stderr] Installed version is: 1.61.0 (2022-05-18). Minimum required: 1.34.0-nightly (2019-02-06). [INFO] [stderr] thread 'main' panicked at 'Aborting compilation due to incompatible compiler.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:540:17 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55596f15d0fd - std::backtrace_rs::backtrace::libunwind::trace::h22893a5306c091b4 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55596f15d0fd - std::backtrace_rs::backtrace::trace_unsynchronized::h29c3bc6f9e91819d [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55596f15d0fd - std::sys_common::backtrace::_print_fmt::he497d8a0ec903793 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x55596f15d0fd - ::fmt::h9c2a9d2774d81873 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x55596f17b6dc - core::fmt::write::hba4337c43d992f49 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/fmt/mod.rs:1194:17 [INFO] [stderr] 5: 0x55596f15a521 - std::io::Write::write_fmt::heb73de6e02cfabed [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/io/mod.rs:1655:15 [INFO] [stderr] 6: 0x55596f15ea55 - std::sys_common::backtrace::_print::h63c8b24acdd8e8ce [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x55596f15ea55 - std::sys_common::backtrace::print::h426700d6240cdcc2 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x55596f15ea55 - std::panicking::default_hook::{{closure}}::hc9a76eed0b18f82b [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x55596f15e709 - std::panicking::default_hook::h2e88d02087fae196 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x55596f15efa2 - std::panicking::rust_panic_with_hook::habfdcc2e90f9fd4c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x55596f0610a8 - std::panicking::begin_panic::{{closure}}::h83bcbca8e6f39e69 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:617:9 [INFO] [stderr] 12: 0x55596f0a9659 - std::sys_common::backtrace::__rust_end_short_backtrace::h9fc1892bf6ad55cc [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x55596f060ff8 - std::panicking::begin_panic::hc5050a20a4e8ed3e [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:616:12 [INFO] [stderr] 14: 0x55596ef6a7fd - build_script_build::check_rustc_version::hc650a6c8ef0fbdeb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:540:17 [INFO] [stderr] 15: 0x55596ef6ac44 - build_script_build::main::h7f288ef0dcc84c38 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:564:5 [INFO] [stderr] 16: 0x55596ef7a382 - core::ops::function::FnOnce::call_once::h77ed42c8e6b9d98e [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55596ef7b78a - std::sys_common::backtrace::__rust_begin_short_backtrace::h2cbfdb818e36345c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 18: 0x55596ef71ee6 - std::rt::lang_start::{{closure}}::h687b01e96379a92c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:145:18 [INFO] [stderr] 19: 0x55596f156b3e - core::ops::function::impls:: for &F>::call_once::had4f69b3aefb47a8 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55596f156b3e - std::panicking::try::do_call::hf2ad5355fcafe775 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 21: 0x55596f156b3e - std::panicking::try::h0a63ac363423e61e [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 22: 0x55596f156b3e - std::panic::catch_unwind::h18088edcecb8693a [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panic.rs:137:14 [INFO] [stderr] 23: 0x55596f156b3e - std::rt::lang_start_internal::{{closure}}::ha7dad166dc711761 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:128:48 [INFO] [stderr] 24: 0x55596f156b3e - std::panicking::try::do_call::hda0c61bf3a57d6e6 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 25: 0x55596f156b3e - std::panicking::try::hbc940e68560040a9 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 26: 0x55596f156b3e - std::panic::catch_unwind::haed0df2aeb3fa368 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panic.rs:137:14 [INFO] [stderr] 27: 0x55596f156b3e - std::rt::lang_start_internal::h9c06694362b5b80c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:128:20 [INFO] [stderr] 28: 0x55596ef71eb0 - std::rt::lang_start::h9dc147ab2c0c7b42 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:144:17 [INFO] [stderr] 29: 0x55596ef6bfac - main [INFO] [stderr] 30: 0x7f9a9d81b0b3 - __libc_start_main [INFO] [stderr] 31: 0x55596ef63c4e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "caedcbe6089e59769c2bf29dab536ce0c1d822f09ed45b6db3db32f7896c4b5b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "caedcbe6089e59769c2bf29dab536ce0c1d822f09ed45b6db3db32f7896c4b5b", kill_on_drop: false }` [INFO] [stdout] caedcbe6089e59769c2bf29dab536ce0c1d822f09ed45b6db3db32f7896c4b5b