[INFO] cloning repository https://github.com/Curryrasul/labs-bioinformatics
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Curryrasul/labs-bioinformatics" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCurryrasul%2Flabs-bioinformatics", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCurryrasul%2Flabs-bioinformatics'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d40c7dae4f2955951b5f7fcef83c0c2e74fee2c2
[INFO] documenting Curryrasul/labs-bioinformatics against 1.61.0 for beta-1.62-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCurryrasul%2Flabs-bioinformatics" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Curryrasul/labs-bioinformatics on toolchain 1.61.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Curryrasul/labs-bioinformatics
[INFO] finished tweaking git repo https://github.com/Curryrasul/labs-bioinformatics
[INFO] tweaked toml for git repo https://github.com/Curryrasul/labs-bioinformatics written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2e5d15089b5ed9faaf1c3fcd394a02b4c61c578c7c2f906015c7bd9464286f8c
[INFO] running `Command { std: "docker" "start" "-a" "2e5d15089b5ed9faaf1c3fcd394a02b4c61c578c7c2f906015c7bd9464286f8c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2e5d15089b5ed9faaf1c3fcd394a02b4c61c578c7c2f906015c7bd9464286f8c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2e5d15089b5ed9faaf1c3fcd394a02b4c61c578c7c2f906015c7bd9464286f8c", kill_on_drop: false }`
[INFO] [stdout] 2e5d15089b5ed9faaf1c3fcd394a02b4c61c578c7c2f906015c7bd9464286f8c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 51799712a0abe7083387496c77afc7a970cdcf607c0d1875599c5b3df1f861fa
[INFO] running `Command { std: "docker" "start" "-a" "51799712a0abe7083387496c77afc7a970cdcf607c0d1875599c5b3df1f861fa", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Checking needleman-wunsch v0.1.0 (/opt/rustwide/workdir/needleman-wunsch)
[INFO] [stderr]  Documenting nw-affin v0.1.0 (/opt/rustwide/workdir/nw-affin)
[INFO] [stderr]  Documenting needleman-wunsch v0.1.0 (/opt/rustwide/workdir/needleman-wunsch)
[INFO] [stderr]  Documenting hirschberg v0.1.0 (/opt/rustwide/workdir/hirschberg)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 10.02s
[INFO] running `Command { std: "docker" "inspect" "51799712a0abe7083387496c77afc7a970cdcf607c0d1875599c5b3df1f861fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "51799712a0abe7083387496c77afc7a970cdcf607c0d1875599c5b3df1f861fa", kill_on_drop: false }`
[INFO] [stdout] 51799712a0abe7083387496c77afc7a970cdcf607c0d1875599c5b3df1f861fa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "rustdoc" "--lib" "-Zrustdoc-map" "--frozen" "--message-format=json" "--" "-Z" "unstable-options" "--document-private-items", kill_on_drop: false }`
[INFO] [stdout] c4ecef9729c52466b9b068976ca8943e46186e835215f00f758517c104a3ecc9
[INFO] running `Command { std: "docker" "start" "-a" "c4ecef9729c52466b9b068976ca8943e46186e835215f00f758517c104a3ecc9", kill_on_drop: false }`
[INFO] [stderr] error: manifest path `/opt/rustwide/workdir/Cargo.toml` is a virtual manifest, but this command requires running against an actual package in this workspace
[INFO] running `Command { std: "docker" "inspect" "c4ecef9729c52466b9b068976ca8943e46186e835215f00f758517c104a3ecc9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c4ecef9729c52466b9b068976ca8943e46186e835215f00f758517c104a3ecc9", kill_on_drop: false }`
[INFO] [stdout] c4ecef9729c52466b9b068976ca8943e46186e835215f00f758517c104a3ecc9