[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] documenting 38/pyd4 against 1.61.0 for beta-1.62-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-28/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-28/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 1.61.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-28/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/38/d4-format.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3 v0.12.4 [INFO] [stderr] Downloaded pyo3-derive-backend v0.12.4 [INFO] [stderr] Downloaded pyo3cls v0.12.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1fb22bd85f63446c9bbcfd3f661dccee8338682f29042c82d65d92e9d0d0004e [INFO] running `Command { std: "docker" "start" "-a" "1fb22bd85f63446c9bbcfd3f661dccee8338682f29042c82d65d92e9d0d0004e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1fb22bd85f63446c9bbcfd3f661dccee8338682f29042c82d65d92e9d0d0004e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1fb22bd85f63446c9bbcfd3f661dccee8338682f29042c82d65d92e9d0d0004e", kill_on_drop: false }` [INFO] [stdout] 1fb22bd85f63446c9bbcfd3f661dccee8338682f29042c82d65d92e9d0d0004e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0661135db203d25b8eaa82093b216facb677b3172cbe44ef35cb94d9c0d81add [INFO] running `Command { std: "docker" "start" "-a" "0661135db203d25b8eaa82093b216facb677b3172cbe44ef35cb94d9c0d81add", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-de846534fad4b03b/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-f3891e962b883ec4/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-f3891e962b883ec4/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5636e661e25d - std::backtrace_rs::backtrace::libunwind::trace::h22893a5306c091b4 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x5636e661e25d - std::backtrace_rs::backtrace::trace_unsynchronized::h29c3bc6f9e91819d [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5636e661e25d - std::sys_common::backtrace::_print_fmt::he497d8a0ec903793 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x5636e661e25d - ::fmt::h9c2a9d2774d81873 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x5636e664314c - core::fmt::write::hba4337c43d992f49 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/fmt/mod.rs:1194:17 [INFO] [stderr] 5: 0x5636e661ae81 - std::io::Write::write_fmt::heb73de6e02cfabed [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/io/mod.rs:1655:15 [INFO] [stderr] 6: 0x5636e66200f5 - std::sys_common::backtrace::_print::h63c8b24acdd8e8ce [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x5636e66200f5 - std::sys_common::backtrace::print::h426700d6240cdcc2 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x5636e66200f5 - std::panicking::default_hook::{{closure}}::hc9a76eed0b18f82b [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x5636e661fda9 - std::panicking::default_hook::h2e88d02087fae196 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x5636e6620642 - std::panicking::rust_panic_with_hook::habfdcc2e90f9fd4c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x5636e66204e9 - std::panicking::begin_panic_handler::{{closure}}::he054b2a83a51d2cd [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:586:13 [INFO] [stderr] 12: 0x5636e661e714 - std::sys_common::backtrace::__rust_end_short_backtrace::ha48b94ab49b30915 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x5636e6620259 - rust_begin_unwind [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x5636e60d9b43 - core::panicking::panic_fmt::h366d3a309ae17c94 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x5636e60d9a0d - core::panicking::panic::h8705e81f284be8a5 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/panicking.rs:48:5 [INFO] [stderr] 16: 0x5636e60da6f9 - build_script_build::build_own_htslib::h4a7fefd9a69d8c80 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] 17: 0x5636e60dab34 - build_script_build::main::h7b69068e519380b7 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:66:9 [INFO] [stderr] 18: 0x5636e60dc73b - core::ops::function::FnOnce::call_once::h5b54a0b4e6bb4c4a [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x5636e60de4de - std::sys_common::backtrace::__rust_begin_short_backtrace::hb5e655cf4da2b90c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 20: 0x5636e60dc6b1 - std::rt::lang_start::{{closure}}::hc26e1069208cf9c1 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x5636e6616dfe - core::ops::function::impls:: for &F>::call_once::had4f69b3aefb47a8 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x5636e6616dfe - std::panicking::try::do_call::hf2ad5355fcafe775 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 23: 0x5636e6616dfe - std::panicking::try::h0a63ac363423e61e [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 24: 0x5636e6616dfe - std::panic::catch_unwind::h18088edcecb8693a [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panic.rs:137:14 [INFO] [stderr] 25: 0x5636e6616dfe - std::rt::lang_start_internal::{{closure}}::ha7dad166dc711761 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x5636e6616dfe - std::panicking::try::do_call::hda0c61bf3a57d6e6 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:492:40 [INFO] [stderr] 27: 0x5636e6616dfe - std::panicking::try::hbc940e68560040a9 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panicking.rs:456:19 [INFO] [stderr] 28: 0x5636e6616dfe - std::panic::catch_unwind::haed0df2aeb3fa368 [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/panic.rs:137:14 [INFO] [stderr] 29: 0x5636e6616dfe - std::rt::lang_start_internal::h9c06694362b5b80c [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x5636e60dc680 - std::rt::lang_start::h0f699cf1f04d830a [INFO] [stderr] at /rustc/fe5b13d681f25ee6474be29d748c65adcd91f69e/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x5636e60db1bc - main [INFO] [stderr] 32: 0x7f76990e90b3 - __libc_start_main [INFO] [stderr] 33: 0x5636e60d9e3e - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "0661135db203d25b8eaa82093b216facb677b3172cbe44ef35cb94d9c0d81add", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0661135db203d25b8eaa82093b216facb677b3172cbe44ef35cb94d9c0d81add", kill_on_drop: false }` [INFO] [stdout] 0661135db203d25b8eaa82093b216facb677b3172cbe44ef35cb94d9c0d81add