[INFO] fetching crate rustybam 0.1.29... [INFO] testing rustybam-0.1.29 against beta-2022-04-10 for beta-1.61-1 [INFO] extracting crate rustybam 0.1.29 into /workspace/builds/worker-23/source [INFO] validating manifest of crates.io crate rustybam 0.1.29 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-23/source/.cargo/config [INFO] started tweaking crates.io crate rustybam 0.1.29 [INFO] finished tweaking crates.io crate rustybam 0.1.29 [INFO] tweaked toml for crates.io crate rustybam 0.1.29 written to /workspace/builds/worker-23/source/Cargo.toml [INFO] crate crates.io crate rustybam 0.1.29 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: file found to be present in multiple build targets: /workspace/builds/worker-23/source/src/main.rs [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1163e7df73bdebbd5e8ca8dfeb89678c70971d4eb996174eddf044f05b538453 [INFO] running `Command { std: "docker" "start" "-a" "1163e7df73bdebbd5e8ca8dfeb89678c70971d4eb996174eddf044f05b538453", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1163e7df73bdebbd5e8ca8dfeb89678c70971d4eb996174eddf044f05b538453", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1163e7df73bdebbd5e8ca8dfeb89678c70971d4eb996174eddf044f05b538453", kill_on_drop: false }` [INFO] [stdout] 1163e7df73bdebbd5e8ca8dfeb89678c70971d4eb996174eddf044f05b538453 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 03d46998a0d15b35ed729ceeae114cffb08f77d04ef1d10ba7c45d6e25e4eb6c [INFO] running `Command { std: "docker" "start" "-a" "03d46998a0d15b35ed729ceeae114cffb08f77d04ef1d10ba7c45d6e25e4eb6c", kill_on_drop: false }` [INFO] [stderr] warning: file found to be present in multiple build targets: /opt/rustwide/workdir/src/main.rs [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling crossbeam-utils v0.8.7 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling rustversion v1.0.6 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling unicode-segmentation v1.9.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.7 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling futures-core v0.3.21 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling anyhow v1.0.56 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling fixedbitset v0.4.1 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling futures-sink v0.3.21 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling strum v0.23.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling bimap v0.6.2 [INFO] [stderr] Compiling natord v1.0.9 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling lock_api v0.4.6 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling jobserver v0.1.24 [INFO] [stderr] Compiling getrandom v0.2.5 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling regex v1.5.5 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling colored v2.0.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling nanorand v0.6.1 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling petgraph v0.6.0 [INFO] [stderr] Compiling core_affinity v0.5.10 [INFO] [stderr] Compiling spin v0.9.2 [INFO] [stderr] Compiling env_logger v0.9.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling ndarray v0.15.4 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.2 [INFO] [stderr] Compiling cmake v0.1.48 [INFO] [stderr] Compiling openssl-src v111.17.0+1.1.1m [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling openssl-sys v0.9.72 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.52+curl-7.81.0 [INFO] [stderr] Compiling libdeflate-sys v0.7.5 [INFO] [stderr] Compiling hts-sys v2.0.2 [INFO] [stderr] Compiling libz-sys v1.1.5 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling libdeflater v0.7.5 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling serde_derive v1.0.136 [INFO] [stderr] Compiling clap_derive v3.1.4 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling pin-project-internal v1.0.10 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling calmio_filters v0.1.0 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling calm_io v0.1.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling pin-project v1.0.10 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling flume v0.10.11 [INFO] [stderr] Compiling bio-types v0.12.1 [INFO] [stderr] Compiling clap v3.1.6 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling clap_complete v3.1.1 [INFO] [stderr] Compiling clap_generate v3.0.3 [INFO] [stderr] Compiling gzp v0.9.5 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling rustybam v0.1.29 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::PropagateVersion`: Replaced with `Command::propagate_version` and `Command::is_propagate_version_set` [INFO] [stdout] --> src/cli.rs:5:36 [INFO] [stdout] | [INFO] [stdout] 5 | #[clap(global_setting(AppSettings::PropagateVersion))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::InferSubcommands`: Replaced with `Command::infer_subcommands` [INFO] [stdout] --> src/cli.rs:7:36 [INFO] [stdout] | [INFO] [stdout] 7 | #[clap(global_setting(AppSettings::InferSubcommands))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::HelpExpected`: Replaced with `Command::help_expected` [INFO] [stdout] --> src/cli.rs:8:36 [INFO] [stdout] | [INFO] [stdout] 8 | #[clap(global_setting(AppSettings::HelpExpected))] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::SubcommandRequiredElseHelp`: Replaced with `Command::subcommand_required` combined with `Command::arg_required_else_help` [INFO] [stdout] --> src/cli.rs:9:29 [INFO] [stdout] | [INFO] [stdout] 9 | #[clap(setting(AppSettings::SubcommandRequiredElseHelp))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling rust-htslib v0.38.2 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling bio v0.39.2 [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::PropagateVersion`: Replaced with `Command::propagate_version` and `Command::is_propagate_version_set` [INFO] [stdout] --> src/cli.rs:5:36 [INFO] [stdout] | [INFO] [stdout] 5 | #[clap(global_setting(AppSettings::PropagateVersion))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::InferSubcommands`: Replaced with `Command::infer_subcommands` [INFO] [stdout] --> src/cli.rs:7:36 [INFO] [stdout] | [INFO] [stdout] 7 | #[clap(global_setting(AppSettings::InferSubcommands))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::HelpExpected`: Replaced with `Command::help_expected` [INFO] [stdout] --> src/cli.rs:8:36 [INFO] [stdout] | [INFO] [stdout] 8 | #[clap(global_setting(AppSettings::HelpExpected))] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::SubcommandRequiredElseHelp`: Replaced with `Command::subcommand_required` combined with `Command::arg_required_else_help` [INFO] [stdout] --> src/cli.rs:9:29 [INFO] [stdout] | [INFO] [stdout] 9 | #[clap(setting(AppSettings::SubcommandRequiredElseHelp))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 49.69s [INFO] running `Command { std: "docker" "inspect" "03d46998a0d15b35ed729ceeae114cffb08f77d04ef1d10ba7c45d6e25e4eb6c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "03d46998a0d15b35ed729ceeae114cffb08f77d04ef1d10ba7c45d6e25e4eb6c", kill_on_drop: false }` [INFO] [stdout] 03d46998a0d15b35ed729ceeae114cffb08f77d04ef1d10ba7c45d6e25e4eb6c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 156819b6c2a52734d2367c2d457602a787c904f4c31d5607ee467af75b654472 [INFO] running `Command { std: "docker" "start" "-a" "156819b6c2a52734d2367c2d457602a787c904f4c31d5607ee467af75b654472", kill_on_drop: false }` [INFO] [stderr] warning: file found to be present in multiple build targets: /opt/rustwide/workdir/src/main.rs [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::PropagateVersion`: Replaced with `Command::propagate_version` and `Command::is_propagate_version_set` [INFO] [stdout] --> src/cli.rs:5:36 [INFO] [stdout] | [INFO] [stdout] 5 | #[clap(global_setting(AppSettings::PropagateVersion))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::InferSubcommands`: Replaced with `Command::infer_subcommands` [INFO] [stdout] --> src/cli.rs:7:36 [INFO] [stdout] | [INFO] [stdout] 7 | #[clap(global_setting(AppSettings::InferSubcommands))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::HelpExpected`: Replaced with `Command::help_expected` [INFO] [stdout] --> src/cli.rs:8:36 [INFO] [stdout] | [INFO] [stdout] 8 | #[clap(global_setting(AppSettings::HelpExpected))] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::SubcommandRequiredElseHelp`: Replaced with `Command::subcommand_required` combined with `Command::arg_required_else_help` [INFO] [stdout] --> src/cli.rs:9:29 [INFO] [stdout] | [INFO] [stdout] 9 | #[clap(setting(AppSettings::SubcommandRequiredElseHelp))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::PropagateVersion`: Replaced with `Command::propagate_version` and `Command::is_propagate_version_set` [INFO] [stdout] --> src/cli.rs:5:36 [INFO] [stdout] | [INFO] [stdout] 5 | #[clap(global_setting(AppSettings::PropagateVersion))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::InferSubcommands`: Replaced with `Command::infer_subcommands` [INFO] [stdout] --> src/cli.rs:7:36 [INFO] [stdout] | [INFO] [stdout] 7 | #[clap(global_setting(AppSettings::InferSubcommands))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::HelpExpected`: Replaced with `Command::help_expected` [INFO] [stdout] --> src/cli.rs:8:36 [INFO] [stdout] | [INFO] [stdout] 8 | #[clap(global_setting(AppSettings::HelpExpected))] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::SubcommandRequiredElseHelp`: Replaced with `Command::subcommand_required` combined with `Command::arg_required_else_help` [INFO] [stdout] --> src/cli.rs:9:29 [INFO] [stdout] | [INFO] [stdout] 9 | #[clap(setting(AppSettings::SubcommandRequiredElseHelp))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rustybam v0.1.29 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::PropagateVersion`: Replaced with `Command::propagate_version` and `Command::is_propagate_version_set` [INFO] [stdout] --> src/cli.rs:5:36 [INFO] [stdout] | [INFO] [stdout] 5 | #[clap(global_setting(AppSettings::PropagateVersion))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::InferSubcommands`: Replaced with `Command::infer_subcommands` [INFO] [stdout] --> src/cli.rs:7:36 [INFO] [stdout] | [INFO] [stdout] 7 | #[clap(global_setting(AppSettings::InferSubcommands))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::HelpExpected`: Replaced with `Command::help_expected` [INFO] [stdout] --> src/cli.rs:8:36 [INFO] [stdout] | [INFO] [stdout] 8 | #[clap(global_setting(AppSettings::HelpExpected))] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated unit variant `clap::AppSettings::SubcommandRequiredElseHelp`: Replaced with `Command::subcommand_required` combined with `Command::arg_required_else_help` [INFO] [stdout] --> src/cli.rs:9:29 [INFO] [stdout] | [INFO] [stdout] 9 | #[clap(setting(AppSettings::SubcommandRequiredElseHelp))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 9.73s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/rustybam-9a2abf20b2895b27) [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/rb-b54a6e52ec6fbe68) [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/rustybam-cc41e378bf5ed651) [INFO] running `Command { std: "docker" "inspect" "156819b6c2a52734d2367c2d457602a787c904f4c31d5607ee467af75b654472", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "156819b6c2a52734d2367c2d457602a787c904f4c31d5607ee467af75b654472", kill_on_drop: false }` [INFO] [stdout] 156819b6c2a52734d2367c2d457602a787c904f4c31d5607ee467af75b654472 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 476a619fbed326ec31a202be035282691496c0ccb5973a5a8aebe29c06dc5421 [INFO] running `Command { std: "docker" "start" "-a" "476a619fbed326ec31a202be035282691496c0ccb5973a5a8aebe29c06dc5421", kill_on_drop: false }` [INFO] [stderr] warning: file found to be present in multiple build targets: /opt/rustwide/workdir/src/main.rs [INFO] [stderr] warning: use of deprecated unit variant `clap::AppSettings::PropagateVersion`: Replaced with `Command::propagate_version` and `Command::is_propagate_version_set` [INFO] [stderr] --> src/cli.rs:5:36 [INFO] [stderr] | [INFO] [stderr] 5 | #[clap(global_setting(AppSettings::PropagateVersion))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated unit variant `clap::AppSettings::InferSubcommands`: Replaced with `Command::infer_subcommands` [INFO] [stderr] --> src/cli.rs:7:36 [INFO] [stderr] | [INFO] [stderr] 7 | #[clap(global_setting(AppSettings::InferSubcommands))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated unit variant `clap::AppSettings::HelpExpected`: Replaced with `Command::help_expected` [INFO] [stderr] --> src/cli.rs:8:36 [INFO] [stderr] | [INFO] [stderr] 8 | #[clap(global_setting(AppSettings::HelpExpected))] [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated unit variant `clap::AppSettings::SubcommandRequiredElseHelp`: Replaced with `Command::subcommand_required` combined with `Command::arg_required_else_help` [INFO] [stderr] --> src/cli.rs:9:29 [INFO] [stderr] | [INFO] [stderr] 9 | #[clap(setting(AppSettings::SubcommandRequiredElseHelp))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `rustybam` (build script) generated 4 warnings [INFO] [stderr] warning: `rustybam` (lib) generated 4 warnings (4 duplicates) [INFO] [stderr] warning: `rustybam` (lib test) generated 4 warnings (4 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.34s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rustybam-9a2abf20b2895b27) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test annotate::tests::test_chrom_specific_overlaps ... ok [INFO] [stdout] test bamstats::tests::test_add_cigar_stats ... ok [INFO] [stdout] test suns::tests::test_convert ... ok [INFO] [stdout] test liftover::tests::test_aln_pair_liftover ... ok [INFO] [stdout] test liftover::tests::check_invertible ... ok [INFO] [stdout] test trim_overlap::tests::test_inversion_trimming ... ok [INFO] [stdout] test suns::tests::test_sun_finding ... ok [INFO] [stdout] test bamstats::tests::test_cigar_stats_from_test_file ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rb-b54a6e52ec6fbe68) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rustybam-cc41e378bf5ed651) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests rustybam [INFO] [stdout] [INFO] [stdout] running 26 tests [INFO] [stdout] test src/trim_overlap.rs - trim_overlap::trim_overlapping_pafs (line 22) ... FAILED [INFO] [stdout] test src/nucfreq.rs - nucfreq::nucfreq (line 41) ... FAILED [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `rustdoc --edition=2021 --crate-type lib --crate-name rustybam --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps -L native=/opt/rustwide/target/debug/build/bzip2-sys-6d99065cee3005e4/out/lib -L native=/opt/rustwide/target/debug/build/curl-sys-9078a0c8c1359ec7/out/build -L native=/opt/rustwide/target/debug/build/hts-sys-94dad8a446c7ccdb/out -L native=/opt/rustwide/target/debug/build/libdeflate-sys-25c617a4a3825e4b/out/lib -L native=/opt/rustwide/target/debug/build/libz-sys-02a4d8f02b2ab820/out/lib -L native=/opt/rustwide/target/debug/build/lzma-sys-826713d4a14a2b5b/out -L native=/opt/rustwide/target/debug/build/openssl-sys-3dab51f8858b16a2/out/openssl-build/install/lib --extern anyhow=/opt/rustwide/target/debug/deps/libanyhow-8d913275b3a360fa.rlib --extern bimap=/opt/rustwide/target/debug/deps/libbimap-b3840b5423028e89.rlib --extern bio=/opt/rustwide/target/debug/deps/libbio-d8412de1750b9a83.rlib --extern bio_types=/opt/rustwide/target/debug/deps/libbio_types-63bc848700f9db68.rlib --extern calm_io=/opt/rustwide/target/debug/deps/libcalm_io-31bada82833a0428.rlib --extern chrono=/opt/rustwide/target/debug/deps/libchrono-5907fac763571be8.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-8b9f736908a6b074.rlib --extern colored=/opt/rustwide/target/debug/deps/libcolored-c6a4d544291fa127.rlib --extern env_logger=/opt/rustwide/target/debug/deps/libenv_logger-3063bbaab57b9d01.rlib --extern flate2=/opt/rustwide/target/debug/deps/libflate2-47ebbeb75f7645d2.rlib --extern gzp=/opt/rustwide/target/debug/deps/libgzp-786bee94bc7f278a.rlib --extern itertools=/opt/rustwide/target/debug/deps/libitertools-45c62fce4e631d3b.rlib --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-86422d76b8bd90ed.rlib --extern log=/opt/rustwide/target/debug/deps/liblog-ba3200a69ea295c7.rlib --extern natord=/opt/rustwide/target/debug/deps/libnatord-9495783306407a6a.rlib --extern needletail=/opt/rustwide/target/debug/deps/libneedletail-aa54004ed5bec532.rlib --extern rayon=/opt/rustwide/target/debug/deps/librayon-833563c7d184b136.rlib --extern regex=/opt/rustwide/target/debug/deps/libregex-dc665b958b1337b2.rlib --extern rust_htslib=/opt/rustwide/target/debug/deps/librust_htslib-c7adbe8f4fb09a84.rlib --extern rustybam=/opt/rustwide/target/debug/deps/librustybam-bff793a21321824f.rlib -C embed-bitcode=no --cfg 'feature="any_zlib"' --cfg 'feature="default"' --cfg 'feature="deflate_zlib_ng"' --cfg 'feature="libdeflate"' --error-format human` (signal: 9, SIGKILL: kill) [INFO] running `Command { std: "docker" "inspect" "476a619fbed326ec31a202be035282691496c0ccb5973a5a8aebe29c06dc5421", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "476a619fbed326ec31a202be035282691496c0ccb5973a5a8aebe29c06dc5421", kill_on_drop: false }` [INFO] [stdout] 476a619fbed326ec31a202be035282691496c0ccb5973a5a8aebe29c06dc5421