[INFO] fetching crate psdm 0.1.0... [INFO] testing psdm-0.1.0 against beta-2022-04-10 for beta-1.61-1 [INFO] extracting crate psdm 0.1.0 into /workspace/builds/worker-111/source [INFO] validating manifest of crates.io crate psdm 0.1.0 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate psdm 0.1.0 [INFO] finished tweaking crates.io crate psdm 0.1.0 [INFO] tweaked toml for crates.io crate psdm 0.1.0 written to /workspace/builds/worker-111/source/Cargo.toml [INFO] crate crates.io crate psdm 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] dfc6afb970fc37bbfe06f611baf77c2947ec5596f40ee6f2a940251f02ef944e [INFO] running `Command { std: "docker" "start" "-a" "dfc6afb970fc37bbfe06f611baf77c2947ec5596f40ee6f2a940251f02ef944e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "dfc6afb970fc37bbfe06f611baf77c2947ec5596f40ee6f2a940251f02ef944e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dfc6afb970fc37bbfe06f611baf77c2947ec5596f40ee6f2a940251f02ef944e", kill_on_drop: false }` [INFO] [stdout] dfc6afb970fc37bbfe06f611baf77c2947ec5596f40ee6f2a940251f02ef944e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 779e42cc6093ab346bab835dce42f769ac8664ece465be270dc6389f3086629f [INFO] running `Command { std: "docker" "start" "-a" "779e42cc6093ab346bab835dce42f769ac8664ece465be270dc6389f3086629f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.105 [INFO] [stderr] Compiling proc-macro2 v1.0.32 [INFO] [stderr] Compiling syn v1.0.81 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling cc v1.0.71 [INFO] [stderr] Compiling pkg-config v0.3.22 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling anyhow v1.0.44 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling matrixmultiply v0.3.1 [INFO] [stderr] Compiling itertools v0.10.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling num-complex v0.4.0 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling terminal_size v0.1.17 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling env_logger v0.9.0 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling console v0.15.0 [INFO] [stderr] Compiling ndarray v0.15.3 [INFO] [stderr] Compiling noodles-bgzf v0.4.0 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling noodles-sam v0.6.0 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling noodles-core v0.2.3 [INFO] [stderr] Compiling noodles-fasta v0.3.1 [INFO] [stderr] Compiling indicatif v0.16.2 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling structopt v0.3.25 [INFO] [stderr] Compiling bgzip v0.2.1 [INFO] [stderr] Compiling niffler v2.3.2 [INFO] [stderr] Compiling psdm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 24.57s [INFO] running `Command { std: "docker" "inspect" "779e42cc6093ab346bab835dce42f769ac8664ece465be270dc6389f3086629f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "779e42cc6093ab346bab835dce42f769ac8664ece465be270dc6389f3086629f", kill_on_drop: false }` [INFO] [stdout] 779e42cc6093ab346bab835dce42f769ac8664ece465be270dc6389f3086629f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 341c1ee258d471f73594a1fe0fac356db69cf1a2ff1986bcebf3d41ff963ddb2 [INFO] running `Command { std: "docker" "start" "-a" "341c1ee258d471f73594a1fe0fac356db69cf1a2ff1986bcebf3d41ff963ddb2", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling predicates-core v1.0.2 [INFO] [stderr] Compiling ppv-lite86 v0.2.15 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling termtree v0.2.3 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling predicates-tree v1.0.4 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling predicates v2.0.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling assert_cmd v2.0.2 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling psdm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.35s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/psdm-48ea956370be0b06) [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/psdm-b5b00aface3897a2) [INFO] [stderr] Executable tests/main.rs (/opt/rustwide/target/debug/deps/main-d4278c9daf3a2e47) [INFO] running `Command { std: "docker" "inspect" "341c1ee258d471f73594a1fe0fac356db69cf1a2ff1986bcebf3d41ff963ddb2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "341c1ee258d471f73594a1fe0fac356db69cf1a2ff1986bcebf3d41ff963ddb2", kill_on_drop: false }` [INFO] [stdout] 341c1ee258d471f73594a1fe0fac356db69cf1a2ff1986bcebf3d41ff963ddb2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-111/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e7ec5dfdb8b611992909bdd11c94fc1203a9a09cff6321f80c8d2c7b4c8bae46 [INFO] running `Command { std: "docker" "start" "-a" "e7ec5dfdb8b611992909bdd11c94fc1203a9a09cff6321f80c8d2c7b4c8bae46", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/psdm-48ea956370be0b06) [INFO] [stdout] running 15 tests [INFO] [stdout] test tests::alignments_all_have_same_length ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/psdm-b5b00aface3897a2) [INFO] [stdout] test tests::alignments_do_not_all_have_same_length ... ok [INFO] [stderr] Running tests/main.rs (/opt/rustwide/target/debug/deps/main-d4278c9daf3a2e47) [INFO] [stdout] test tests::alignments_sorted_by_id ... ok [INFO] [stdout] test tests::alignments_do_not_have_same_length_as_starting_seqlen ... ok [INFO] [stdout] test tests::argsort ... ok [INFO] [stdout] test tests::argsort_on_empty ... ok [INFO] [stdout] test tests::argsort_with_str ... ok [INFO] [stdout] test tests::parse_chars ... ok [INFO] [stdout] test tests::test_hamming_distance ... ok [INFO] [stdout] test tests::sort_by_index ... ok [INFO] [stdout] test tests::transform_ignore_case ... ok [INFO] [stdout] test tests::transform_ignore_chars ... ok [INFO] [stdout] test tests::transform_ignore_chars_case_sensitive ... ok [INFO] [stdout] test tests::transform_ignore_chars_case_insensitive ... ok [INFO] [stdout] test tests::transform_preserve_case ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test tests::check_path_exists_it_doesnt ... ok [INFO] [stdout] test tests::check_path_it_does ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test input_file_does_not_exist ... ok [INFO] [stdout] test alignment_is_not_fasta ... ok [INFO] [stdout] test alignment_files_do_not_have_same_length ... ok [INFO] [stdout] test intra_alignment_with_defaults_long_form_sorted ... ok [INFO] [stdout] test inter_alignment_with_tab_delim ... ok [INFO] [stdout] test intra_alignment_with_defaults ... ok [INFO] [stdout] test intra_alignment_with_defaults_long_form ... ok [INFO] [stdout] test inter_alignment_in_long_form_sorted ... ok [INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters_sorted ... ok [INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters ... ok [INFO] [stdout] test alignment_seqs_do_not_have_same_length ... ok [INFO] [stdout] test intra_alignment_with_ignore_case_ignore_no_characters ... ok [INFO] [stdout] test more_than_two_input_files_fails ... ok [INFO] [stdout] test trying_to_create_output_in_nonexistent_dir ... ok [INFO] [stdout] test intra_alignment_with_use_case_ignore_characters ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests psdm [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "e7ec5dfdb8b611992909bdd11c94fc1203a9a09cff6321f80c8d2c7b4c8bae46", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e7ec5dfdb8b611992909bdd11c94fc1203a9a09cff6321f80c8d2c7b4c8bae46", kill_on_drop: false }` [INFO] [stdout] e7ec5dfdb8b611992909bdd11c94fc1203a9a09cff6321f80c8d2c7b4c8bae46