[INFO] fetching crate phyloprob 0.1.2... [INFO] testing phyloprob-0.1.2 against beta-2022-04-10 for beta-1.61-1 [INFO] extracting crate phyloprob 0.1.2 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate phyloprob 0.1.2 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate phyloprob 0.1.2 [INFO] finished tweaking crates.io crate phyloprob 0.1.2 [INFO] tweaked toml for crates.io crate phyloprob 0.1.2 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate phyloprob 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e957238c78538ae9e5de31d3346f720d34292b89a3be598043f677ed48edaff5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e957238c78538ae9e5de31d3346f720d34292b89a3be598043f677ed48edaff5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e957238c78538ae9e5de31d3346f720d34292b89a3be598043f677ed48edaff5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e957238c78538ae9e5de31d3346f720d34292b89a3be598043f677ed48edaff5", kill_on_drop: false }` [INFO] [stdout] e957238c78538ae9e5de31d3346f720d34292b89a3be598043f677ed48edaff5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8d0876f395e30c75b510cf315465343cb788861369dcf4ec37967f9dbedaad69 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8d0876f395e30c75b510cf315465343cb788861369dcf4ec37967f9dbedaad69", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ucd-util v0.1.7 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling num_cpus v1.12.0 [INFO] [stderr] Compiling bio-seq-algos v0.1.15 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling rna-ss-params v0.1.16 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling bstr v0.2.11 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.14 [INFO] [stderr] Compiling phyloprob v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:18:63 [INFO] [stdout] | [INFO] [stdout] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:29:65 [INFO] [stdout] | [INFO] [stdout] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:32:72 [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 11s [INFO] running `Command { std: "docker" "inspect" "8d0876f395e30c75b510cf315465343cb788861369dcf4ec37967f9dbedaad69", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8d0876f395e30c75b510cf315465343cb788861369dcf4ec37967f9dbedaad69", kill_on_drop: false }` [INFO] [stdout] 8d0876f395e30c75b510cf315465343cb788861369dcf4ec37967f9dbedaad69 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 86a2887cc44a5da65c756c8ee9ce8b031dd9ffd406b12c4f5c126126bf5cc5fa [INFO] running `Command { std: "docker" "start" "-a" "86a2887cc44a5da65c756c8ee9ce8b031dd9ffd406b12c4f5c126126bf5cc5fa", kill_on_drop: false }` [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:18:63 [INFO] [stdout] | [INFO] [stdout] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:29:65 [INFO] [stdout] | [INFO] [stdout] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling phyloprob v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:32:72 [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:18:63 [INFO] [stdout] | [INFO] [stdout] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:29:65 [INFO] [stdout] | [INFO] [stdout] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:32:72 [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.05s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/phyloprob-e7b7b1228b64a4a5) [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/phyloprob-964784ab8a0fd6e5) [INFO] [stderr] Executable tests/tests.rs (/opt/rustwide/target/debug/deps/tests-1280effb56d34225) [INFO] running `Command { std: "docker" "inspect" "86a2887cc44a5da65c756c8ee9ce8b031dd9ffd406b12c4f5c126126bf5cc5fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "86a2887cc44a5da65c756c8ee9ce8b031dd9ffd406b12c4f5c126126bf5cc5fa", kill_on_drop: false }` [INFO] [stdout] 86a2887cc44a5da65c756c8ee9ce8b031dd9ffd406b12c4f5c126126bf5cc5fa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 88889a858640d1bfd6700a41b4add1a76247ecd507c0ab1ceceb4cc3220320ff [INFO] running `Command { std: "docker" "start" "-a" "88889a858640d1bfd6700a41b4add1a76247ecd507c0ab1ceceb4cc3220320ff", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary braces around block return value [INFO] [stderr] --> src/utils.rs:18:63 [INFO] [stderr] | [INFO] [stderr] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_braces)]` on by default [INFO] [stderr] help: remove these braces [INFO] [stderr] | [INFO] [stderr] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stderr] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary braces around block return value [INFO] [stderr] --> src/utils.rs:29:65 [INFO] [stderr] | [INFO] [stderr] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these braces [INFO] [stderr] | [INFO] [stderr] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stderr] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:9:1 [INFO] [stderr] | [INFO] [stderr] 9 | / lazy_static! { [INFO] [stderr] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 11 | | [ [INFO] [stderr] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stderr] 30 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:9:1 [INFO] [stderr] | [INFO] [stderr] 9 | / lazy_static! { [INFO] [stderr] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 11 | | [ [INFO] [stderr] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stderr] 30 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `phyloprob` (lib) generated 10 warnings (6 duplicates) [INFO] [stderr] warning: `phyloprob` (lib test) generated 10 warnings (10 duplicates) [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/main.rs:32:72 [INFO] [stderr] | [INFO] [stderr] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: add a "{}" format string to Display the message [INFO] [stderr] | [INFO] [stderr] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `phyloprob` (bin "phyloprob") generated 1 warning [INFO] [stderr] warning: `phyloprob` (bin "phyloprob" test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phyloprob-e7b7b1228b64a4a5) [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/phyloprob-964784ab8a0fd6e5) [INFO] [stdout] [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-1280effb56d34225) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] [stdout] test test_phyloprob_program ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_phyloprob_program stdout ---- [INFO] [stdout] thread 'test_phyloprob_program' panicked at 'Failed to run the PhyloProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:45 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x56362d54959d - std::backtrace_rs::backtrace::libunwind::trace::ha359b7f0090e2792 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x56362d54959d - std::backtrace_rs::backtrace::trace_unsynchronized::h0584631f25c1d70e [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x56362d54959d - std::sys_common::backtrace::_print_fmt::hdadffd97d279ff14 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stdout] 3: 0x56362d54959d - ::fmt::h26f189e611080a74 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stdout] 4: 0x56362d56bfac - core::fmt::write::hfb5d11dfe037e8b7 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/fmt/mod.rs:1194:17 [INFO] [stdout] 5: 0x56362d545f61 - std::io::Write::write_fmt::h6a24ec64406df9e2 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/io/mod.rs:1655:15 [INFO] [stdout] 6: 0x56362d54b2e5 - std::sys_common::backtrace::_print::h7a0e44402913ba60 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stdout] 7: 0x56362d54b2e5 - std::sys_common::backtrace::print::h9767dc455a84e728 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stdout] 8: 0x56362d54b2e5 - std::panicking::default_hook::{{closure}}::h60afd6c8b12988ad [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:295:22 [INFO] [stdout] 9: 0x56362d54afd4 - std::panicking::default_hook::ha7b9bac6813f9d21 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:311:9 [INFO] [stdout] 10: 0x56362d54b832 - std::panicking::rust_panic_with_hook::h7b117a162a6f8664 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:698:17 [INFO] [stdout] 11: 0x56362d54b717 - std::panicking::begin_panic_handler::{{closure}}::h346750923c608600 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:588:13 [INFO] [stdout] 12: 0x56362d549a54 - std::sys_common::backtrace::__rust_end_short_backtrace::h768c56c6a0c055c0 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stdout] 13: 0x56362d54b449 - rust_begin_unwind [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:584:5 [INFO] [stdout] 14: 0x56362d4e83d3 - core::panicking::panic_fmt::h5c41cb2fa118fdbc [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/panicking.rs:143:14 [INFO] [stdout] 15: 0x56362d4e84c3 - core::result::unwrap_failed::h6bc7b183ec719494 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/result.rs:1785:5 [INFO] [stdout] 16: 0x56362d4ed4bc - core::result::Result::expect::h8fc38976826cf284 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/result.rs:1035:23 [INFO] [stdout] 17: 0x56362d4ea587 - tests::run_command::h32e35a2304dcc4a7 [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:19:3 [INFO] [stdout] 18: 0x56362d4ea69d - tests::test_phyloprob_program::hd8acdf7d89f1b84e [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:12:3 [INFO] [stdout] 19: 0x56362d4ea5ca - tests::test_phyloprob_program::{{closure}}::h9b7f09ccecee4da1 [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:8:1 [INFO] [stdout] 20: 0x56362d4ec86e - core::ops::function::FnOnce::call_once::h429752f471846edf [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x56362d522c73 - core::ops::function::FnOnce::call_once::h018fc248431ce8de [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x56362d522c73 - test::__rust_begin_short_backtrace::h293b982b6069d6e3 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/test/src/lib.rs:574:5 [INFO] [stdout] 23: 0x56362d521a29 - as core::ops::function::FnOnce>::call_once::h4fc1be1a762c7a46 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/alloc/src/boxed.rs:1861:9 [INFO] [stdout] 24: 0x56362d521a29 - as core::ops::function::FnOnce<()>>::call_once::hd44623ec51b9e897 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x56362d521a29 - std::panicking::try::do_call::ha8cfa4b025f5b832 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:492:40 [INFO] [stdout] 26: 0x56362d521a29 - std::panicking::try::h664f75e41c112145 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:456:19 [INFO] [stdout] 27: 0x56362d521a29 - std::panic::catch_unwind::h4932ec05cd60558e [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panic.rs:137:14 [INFO] [stdout] 28: 0x56362d521a29 - test::run_test_in_process::ha14a47756671755c [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/test/src/lib.rs:597:18 [INFO] [stdout] 29: 0x56362d521a29 - test::run_test::run_test_inner::{{closure}}::h0ec9e37c8f67b62d [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/test/src/lib.rs:491:39 [INFO] [stdout] 30: 0x56362d4edbde - test::run_test::run_test_inner::{{closure}}::hd9d2e7f26d4f59e6 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/test/src/lib.rs:518:37 [INFO] [stdout] 31: 0x56362d4edbde - std::sys_common::backtrace::__rust_begin_short_backtrace::h41c0a39fac5123f8 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stdout] 32: 0x56362d4f3148 - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h69a02ca0bebb6eeb [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/thread/mod.rs:498:17 [INFO] [stdout] 33: 0x56362d4f3148 - as core::ops::function::FnOnce<()>>::call_once::hdd05632920ce689b [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x56362d4f3148 - std::panicking::try::do_call::hb4947142729b90fd [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:492:40 [INFO] [stdout] 35: 0x56362d4f3148 - std::panicking::try::h15a7e9b8394e6878 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:456:19 [INFO] [stdout] 36: 0x56362d4f3148 - std::panic::catch_unwind::hbd3f4a3f9df49b85 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panic.rs:137:14 [INFO] [stdout] 37: 0x56362d4f3148 - std::thread::Builder::spawn_unchecked_::{{closure}}::h880b5d5f1b9799f4 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/thread/mod.rs:497:30 [INFO] [stdout] 38: 0x56362d4f3148 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h304d5eaf401f5061 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x56362d550143 - as core::ops::function::FnOnce>::call_once::hdba7f2afed0c35b3 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/alloc/src/boxed.rs:1861:9 [INFO] [stdout] 40: 0x56362d550143 - as core::ops::function::FnOnce>::call_once::h38b0832765bf7961 [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/alloc/src/boxed.rs:1861:9 [INFO] [stdout] 41: 0x56362d550143 - std::sys::unix::thread::Thread::new::thread_start::h70236dc17753425e [INFO] [stdout] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 42: 0x7f2db5970609 - start_thread [INFO] [stdout] 43: 0x7f2db5746163 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_phyloprob_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "88889a858640d1bfd6700a41b4add1a76247ecd507c0ab1ceceb4cc3220320ff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "88889a858640d1bfd6700a41b4add1a76247ecd507c0ab1ceceb4cc3220320ff", kill_on_drop: false }` [INFO] [stdout] 88889a858640d1bfd6700a41b4add1a76247ecd507c0ab1ceceb4cc3220320ff