[INFO] fetching crate ncbitaxonomy 1.0.7... [INFO] testing ncbitaxonomy-1.0.7 against beta-2022-04-10 for beta-1.61-1 [INFO] extracting crate ncbitaxonomy 1.0.7 into /workspace/builds/worker-16/source [INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.7 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.7 written to /workspace/builds/worker-16/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 1.0.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a0b611900deca1570b6138dce7e35df67bfbbd899af617179ccb0e0d0080b767 [INFO] running `Command { std: "docker" "start" "-a" "a0b611900deca1570b6138dce7e35df67bfbbd899af617179ccb0e0d0080b767", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a0b611900deca1570b6138dce7e35df67bfbbd899af617179ccb0e0d0080b767", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a0b611900deca1570b6138dce7e35df67bfbbd899af617179ccb0e0d0080b767", kill_on_drop: false }` [INFO] [stdout] a0b611900deca1570b6138dce7e35df67bfbbd899af617179ccb0e0d0080b767 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 728c2fd995d3afe6cf38c2243420cec4c8e5abeac47b70b067c202c2a1e37068 [INFO] running `Command { std: "docker" "start" "-a" "728c2fd995d3afe6cf38c2243420cec4c8e5abeac47b70b067c202c2a1e37068", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling serde v1.0.112 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling stable_deref_trait v1.1.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling crossbeam-utils v0.5.0 [INFO] [stderr] Compiling adler32 v1.1.0 [INFO] [stderr] Compiling gimli v0.21.0 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling object v0.20.0 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling safemem v0.2.0 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling libsqlite3-sys v0.18.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling smallvec v0.6.13 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling owning_ref v0.4.1 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling addr2line v0.12.1 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling backtrace v0.3.49 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling dotenv v0.9.0 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling serde_derive v1.0.112 [INFO] [stderr] Compiling diesel_derives v1.4.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling indextree v3.3.0 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling diesel v1.4.5 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling migrations_internals v1.4.1 [INFO] [stderr] Compiling migrations_macros v1.4.2 [INFO] [stderr] Compiling diesel_migrations v1.4.0 [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 31.66s [INFO] running `Command { std: "docker" "inspect" "728c2fd995d3afe6cf38c2243420cec4c8e5abeac47b70b067c202c2a1e37068", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "728c2fd995d3afe6cf38c2243420cec4c8e5abeac47b70b067c202c2a1e37068", kill_on_drop: false }` [INFO] [stdout] 728c2fd995d3afe6cf38c2243420cec4c8e5abeac47b70b067c202c2a1e37068 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 79e46cc4d233fec63e64fb17298b018d10a76fdcdb195994f27eefaf33ed6393 [INFO] running `Command { std: "docker" "start" "-a" "79e46cc4d233fec63e64fb17298b018d10a76fdcdb195994f27eefaf33ed6393", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.63s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/ncbitaxonomy-801cb2a3dcb598fc) [INFO] [stderr] Executable unittests src/bin/taxonomy_filter_fastq.rs (/opt/rustwide/target/debug/deps/taxonomy_filter_fastq-a64f159e1fbdcc40) [INFO] [stderr] Executable unittests src/bin/taxonomy_filter_refseq.rs (/opt/rustwide/target/debug/deps/taxonomy_filter_refseq-5fc7674ff6260be7) [INFO] [stderr] Executable unittests src/bin/taxonomy_util.rs (/opt/rustwide/target/debug/deps/taxonomy_util-7762015141f01ba4) [INFO] running `Command { std: "docker" "inspect" "79e46cc4d233fec63e64fb17298b018d10a76fdcdb195994f27eefaf33ed6393", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "79e46cc4d233fec63e64fb17298b018d10a76fdcdb195994f27eefaf33ed6393", kill_on_drop: false }` [INFO] [stdout] 79e46cc4d233fec63e64fb17298b018d10a76fdcdb195994f27eefaf33ed6393 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 57ac3fe22d4179e0771189e12a2fa5e66656517fddb69d4fb78e92f896d0d140 [INFO] running `Command { std: "docker" "start" "-a" "57ac3fe22d4179e0771189e12a2fa5e66656517fddb69d4fb78e92f896d0d140", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/ncbitaxonomy-801cb2a3dcb598fc) [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::get_lineage ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::distance_to_common_ancestor ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::get_lineage_sqlite ... ok [INFO] [stdout] test tests::sqlite_descendants ... ok [INFO] [stdout] test tests::sqlite_contains_name ... ok [INFO] [stdout] test tests::sqlite_contains_id ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::sqlite_get_name_by_id ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::sqlite_taxid_descendants ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stdout] test tests::taxid_descendants ... ok [INFO] [stderr] Running unittests src/bin/taxonomy_filter_fastq.rs (/opt/rustwide/target/debug/deps/taxonomy_filter_fastq-a64f159e1fbdcc40) [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/taxonomy_filter_refseq.rs (/opt/rustwide/target/debug/deps/taxonomy_filter_refseq-5fc7674ff6260be7) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/taxonomy_util.rs (/opt/rustwide/target/debug/deps/taxonomy_util-7762015141f01ba4) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiFileTaxonomy::from_ncbi_files (line 105) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.46s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "57ac3fe22d4179e0771189e12a2fa5e66656517fddb69d4fb78e92f896d0d140", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "57ac3fe22d4179e0771189e12a2fa5e66656517fddb69d4fb78e92f896d0d140", kill_on_drop: false }` [INFO] [stdout] 57ac3fe22d4179e0771189e12a2fa5e66656517fddb69d4fb78e92f896d0d140