[INFO] crate fmlrc 0.1.7 is already in cache [INFO] testing fmlrc-0.1.7 against beta-2022-04-10 for beta-1.61-1 [INFO] extracting crate fmlrc 0.1.7 into /workspace/builds/worker-52/source [INFO] validating manifest of crates.io crate fmlrc 0.1.7 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate fmlrc 0.1.7 [INFO] finished tweaking crates.io crate fmlrc 0.1.7 [INFO] tweaked toml for crates.io crate fmlrc 0.1.7 written to /workspace/builds/worker-52/source/Cargo.toml [INFO] crate crates.io crate fmlrc 0.1.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 308d0ec7fcbb33a61845fb9377f7c47c574c5cd3f3c4536470d3d73af95e7bd1 [INFO] running `Command { std: "docker" "start" "-a" "308d0ec7fcbb33a61845fb9377f7c47c574c5cd3f3c4536470d3d73af95e7bd1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "308d0ec7fcbb33a61845fb9377f7c47c574c5cd3f3c4536470d3d73af95e7bd1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "308d0ec7fcbb33a61845fb9377f7c47c574c5cd3f3c4536470d3d73af95e7bd1", kill_on_drop: false }` [INFO] [stdout] 308d0ec7fcbb33a61845fb9377f7c47c574c5cd3f3c4536470d3d73af95e7bd1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1d5b0526377cc3fde56728d8f7ffdfca97772591d57c109fde9ca96616b17583 [INFO] running `Command { std: "docker" "start" "-a" "1d5b0526377cc3fde56728d8f7ffdfca97772591d57c109fde9ca96616b17583", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.117 [INFO] [stderr] Compiling proc-macro2 v1.0.36 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling serde_derive v1.0.136 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling cc v1.0.72 [INFO] [stderr] Compiling pkg-config v0.3.24 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling rustversion v1.0.6 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling unicode-segmentation v1.8.0 [INFO] [stderr] Compiling crc32fast v1.3.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling ryu v1.0.9 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling bio v0.31.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling serde_json v1.0.78 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling fastrand v1.7.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling itoa v1.0.1 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling quote v1.0.15 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling tempfile v3.3.0 [INFO] [stderr] Compiling subprocess v0.2.8 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling threadpool v1.8.1 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling libmath v0.1.4 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling bio-types v0.12.1 [INFO] [stderr] Compiling snafu v0.6.10 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling fmlrc v0.1.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 32.12s [INFO] running `Command { std: "docker" "inspect" "1d5b0526377cc3fde56728d8f7ffdfca97772591d57c109fde9ca96616b17583", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1d5b0526377cc3fde56728d8f7ffdfca97772591d57c109fde9ca96616b17583", kill_on_drop: false }` [INFO] [stdout] 1d5b0526377cc3fde56728d8f7ffdfca97772591d57c109fde9ca96616b17583 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9d21d0c3869ebe4c8d7148f6f5ff562861de866d4521e520f28c65e9f97b7fcd [INFO] running `Command { std: "docker" "start" "-a" "9d21d0c3869ebe4c8d7148f6f5ff562861de866d4521e520f28c65e9f97b7fcd", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.6 [INFO] [stderr] Compiling semver v1.0.4 [INFO] [stderr] Compiling crossbeam-epoch v0.9.6 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling plotters-backend v0.3.2 [INFO] [stderr] Compiling half v1.8.2 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling itertools v0.10.3 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling plotters-svg v0.3.1 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling plotters v0.3.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.2 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling cast v0.2.7 [INFO] [stderr] Compiling criterion-plot v0.4.4 [INFO] [stderr] Compiling criterion v0.3.5 [INFO] [stderr] Compiling fmlrc v0.1.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 26.78s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/fmlrc-5e03c10a19b15cc6) [INFO] [stderr] Executable unittests src/bin/fmlrc2.rs (/opt/rustwide/target/debug/deps/fmlrc2-d95fbe31ad60c8b3) [INFO] [stderr] Executable unittests src/bin/fmlrc2-convert.rs (/opt/rustwide/target/debug/deps/fmlrc2_convert-0041b0e461fdd4e4) [INFO] running `Command { std: "docker" "inspect" "9d21d0c3869ebe4c8d7148f6f5ff562861de866d4521e520f28c65e9f97b7fcd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9d21d0c3869ebe4c8d7148f6f5ff562861de866d4521e520f28c65e9f97b7fcd", kill_on_drop: false }` [INFO] [stdout] 9d21d0c3869ebe4c8d7148f6f5ff562861de866d4521e520f28c65e9f97b7fcd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 064425b6ad5863dbe330849d493a4f719a8312ebc18cc157676027237197e87b [INFO] running `Command { std: "docker" "start" "-a" "064425b6ad5863dbe330849d493a4f719a8312ebc18cc157676027237197e87b", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.33s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fmlrc-5e03c10a19b15cc6) [INFO] [stdout] [INFO] [stdout] running 32 tests [INFO] [stdout] test align::tests::test_edit_distance_minimize ... ok [INFO] [stdout] test align::tests::test_edit_distance ... ok [INFO] [stdout] test align::tests::test_wfa_ed ... ok [INFO] [stdout] test align::tests::test_wfa_minimize ... ok [INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok [INFO] [stdout] test bwt_converter::tests::test_newline ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_allocation ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_indexing ... ok [INFO] [stdout] test bwt_converter::tests::test_compression ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_rank ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_set_bit ... ok [INFO] [stdout] test ropebwt2_util::tests::test_from_fastqs ... ignored [INFO] [stdout] test ropebwt2_util::tests::test_from_strings ... ignored [INFO] [stdout] test indexed_bit_vec::tests::test_offset ... ok [INFO] [stdout] test stats_util::tests::test_median ... ok [INFO] [stdout] test string_util::tests::test_convert_itos ... ok [INFO] [stdout] test string_util::tests::test_convert_stoi ... ok [INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok [INFO] [stdout] test string_util::tests::test_simple_index ... ok [INFO] [stdout] test ordered_fasta_writer::tests::test_fasta_writing ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok [INFO] [stdout] test bv_bwt::tests::test_simple_index ... ok [INFO] [stdout] test bv_bwt::tests::test_simple_pileup ... ok [INFO] [stdout] test bv_bwt::tests::test_load_from_file has been running for over 60 seconds [INFO] [stdout] test bwt_converter::tests::test_bwt_conversion has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_assemble has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_bridge has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_correction_deletion_special has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_correction_job has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_correction_pass has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_diploid_correction_pass has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_expansion_bridge has been running for over 60 seconds [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "064425b6ad5863dbe330849d493a4f719a8312ebc18cc157676027237197e87b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "064425b6ad5863dbe330849d493a4f719a8312ebc18cc157676027237197e87b", kill_on_drop: false }` [INFO] [stdout] 064425b6ad5863dbe330849d493a4f719a8312ebc18cc157676027237197e87b