[INFO] fetching crate debruijn 0.3.4... [INFO] testing debruijn-0.3.4 against beta-2022-04-10 for beta-1.61-1 [INFO] extracting crate debruijn 0.3.4 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate debruijn 0.3.4 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate debruijn 0.3.4 [INFO] finished tweaking crates.io crate debruijn 0.3.4 [INFO] tweaked toml for crates.io crate debruijn 0.3.4 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cea28d60b4112b59db17ed4aa1aa11c8fc78c9f7ab6f6e829ae7e8d5156b7b52 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cea28d60b4112b59db17ed4aa1aa11c8fc78c9f7ab6f6e829ae7e8d5156b7b52", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cea28d60b4112b59db17ed4aa1aa11c8fc78c9f7ab6f6e829ae7e8d5156b7b52", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cea28d60b4112b59db17ed4aa1aa11c8fc78c9f7ab6f6e829ae7e8d5156b7b52", kill_on_drop: false }` [INFO] [stdout] cea28d60b4112b59db17ed4aa1aa11c8fc78c9f7ab6f6e829ae7e8d5156b7b52 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 962bb08e4650bb5ecff3e8403d9145470bc6cd9106c395383e30b6aa4cca2db7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "962bb08e4650bb5ecff3e8403d9145470bc6cd9106c395383e30b6aa4cca2db7", kill_on_drop: false }` [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5.57s [INFO] running `Command { std: "docker" "inspect" "962bb08e4650bb5ecff3e8403d9145470bc6cd9106c395383e30b6aa4cca2db7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "962bb08e4650bb5ecff3e8403d9145470bc6cd9106c395383e30b6aa4cca2db7", kill_on_drop: false }` [INFO] [stdout] 962bb08e4650bb5ecff3e8403d9145470bc6cd9106c395383e30b6aa4cca2db7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5630949859e0b809f8fbe6cb393585875ad3c669025bc631275f8f2d738f26e2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5630949859e0b809f8fbe6cb393585875ad3c669025bc631275f8f2d738f26e2", kill_on_drop: false }` [INFO] [stderr] Compiling pretty_assertions v0.5.1 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:394:33 [INFO] [stdout] | [INFO] [stdout] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:586:25 [INFO] [stdout] | [INFO] [stdout] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:587:25 [INFO] [stdout] | [INFO] [stdout] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 14.20s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn-bcdf802ac83f5c57) [INFO] running `Command { std: "docker" "inspect" "5630949859e0b809f8fbe6cb393585875ad3c669025bc631275f8f2d738f26e2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5630949859e0b809f8fbe6cb393585875ad3c669025bc631275f8f2d738f26e2", kill_on_drop: false }` [INFO] [stdout] 5630949859e0b809f8fbe6cb393585875ad3c669025bc631275f8f2d738f26e2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b8515f87cac464d5aa892d8ee40eba696bb44eee7650232560fa2fd413d1a258 [INFO] running `Command { std: "docker" "start" "-a" "b8515f87cac464d5aa892d8ee40eba696bb44eee7650232560fa2fd413d1a258", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:394:33 [INFO] [stderr] | [INFO] [stderr] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:586:25 [INFO] [stderr] | [INFO] [stderr] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:587:25 [INFO] [stderr] | [INFO] [stderr] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `debruijn` (lib test) generated 3 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn-bcdf802ac83f5c57) [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test dna_string::tests::test_kmers ... ok [INFO] [stdout] test dna_string::tests::test_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_prefix ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_for_debug ... ok [INFO] [stdout] test dna_string::tests::test_from_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_ndiffs ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_get_kmer ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_slice ... ok [INFO] [stdout] test dna_string::tests::test_push_bytes ... ok [INFO] [stdout] test dna_string::tests::test_reverse ... ok [INFO] [stdout] test dna_string::tests::test_suffix ... ok [INFO] [stdout] test dna_string::tests::test_kmers_too_short ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_random ... ok [INFO] [stdout] test bitops_avx2::test::test_invalid_bases ... ok [INFO] [stdout] test kmer::tests::test_kmer_5 ... ok [INFO] [stdout] test kmer::tests::test_kmer_4 ... ok [INFO] [stdout] test kmer::tests::test_kmer_6 ... ok [INFO] [stdout] test kmer::tests::test_kmer_15 ... ok [INFO] [stdout] test kmer::tests::test_kmer_10 ... ok [INFO] [stdout] test kmer::tests::test_kmer_12 ... ok [INFO] [stdout] test kmer::tests::test_kmer_14 ... ok [INFO] [stdout] test kmer::tests::test_kmer_16 ... ok [INFO] [stdout] test msp::tests::test1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_8 ... ok [INFO] [stdout] test msp::tests::test_sample ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_24 ... ok [INFO] [stdout] test neighbors::test::test_hd1 ... ok [INFO] [stdout] test msp::tests::test_slice ... ok [INFO] [stdout] test kmer::tests::test_kmer_20 ... ok [INFO] [stdout] test kmer::tests::test_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_16 ... ok [INFO] [stdout] test test::tests::degen_seq_asm ... ok [INFO] [stdout] test test::tests::degen_seq_asm_sharded ... ok [INFO] [stdout] test test::tests::simple_kmer_compress ... ok [INFO] [stdout] test kmer::tests::test_kmer_24 ... ok [INFO] [stdout] test test::tests::simple_path_compress ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_20 ... ok [INFO] [stdout] test test::tests::simple_sharded ... ok [INFO] [stdout] test test::tests::simple_tip_clean ... ok [INFO] [stdout] test kmer::tests::test_kmer_31 ... ok [INFO] [stdout] test kmer::tests::test_kmer_48 ... ok [INFO] [stdout] test kmer::tests::test_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_2_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_48 ... ok [INFO] [stdout] test test::tests::complex_path_compress ... ok [INFO] [stdout] test dna_string::tests::test_slice_hamming_dist ... ok [INFO] [stdout] test test::tests::complex_sharded ... ok [INFO] [stdout] test test::tests::complex_kmer_compress ... ok [INFO] [stdout] test msp::tests::test_msp_scanner has been running for over 60 seconds [INFO] [stdout] test test::tests::complex_path_compress_k31 has been running for over 60 seconds [INFO] [stdout] test test::tests::complex_path_compress_k31 ... ok [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "b8515f87cac464d5aa892d8ee40eba696bb44eee7650232560fa2fd413d1a258", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b8515f87cac464d5aa892d8ee40eba696bb44eee7650232560fa2fd413d1a258", kill_on_drop: false }` [INFO] [stdout] b8515f87cac464d5aa892d8ee40eba696bb44eee7650232560fa2fd413d1a258