[INFO] fetching crate bio-types 0.12.1... [INFO] testing bio-types-0.12.1 against beta-2022-04-10 for beta-1.61-1 [INFO] extracting crate bio-types 0.12.1 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate bio-types 0.12.1 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bio-types 0.12.1 [INFO] finished tweaking crates.io crate bio-types 0.12.1 [INFO] tweaked toml for crates.io crate bio-types 0.12.1 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6499965efcb8463e3395cf10e0ae3911ae4b8635258ad7ddc32279e2032cddac [INFO] running `Command { std: "docker" "start" "-a" "6499965efcb8463e3395cf10e0ae3911ae4b8635258ad7ddc32279e2032cddac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6499965efcb8463e3395cf10e0ae3911ae4b8635258ad7ddc32279e2032cddac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6499965efcb8463e3395cf10e0ae3911ae4b8635258ad7ddc32279e2032cddac", kill_on_drop: false }` [INFO] [stdout] 6499965efcb8463e3395cf10e0ae3911ae4b8635258ad7ddc32279e2032cddac [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9333849db076cc04e00ab3e0872043c54872f610000ab90e0184a0028fe6c37e [INFO] running `Command { std: "docker" "start" "-a" "9333849db076cc04e00ab3e0872043c54872f610000ab90e0184a0028fe6c37e", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling bio-types v0.12.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2.52s [INFO] running `Command { std: "docker" "inspect" "9333849db076cc04e00ab3e0872043c54872f610000ab90e0184a0028fe6c37e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9333849db076cc04e00ab3e0872043c54872f610000ab90e0184a0028fe6c37e", kill_on_drop: false }` [INFO] [stdout] 9333849db076cc04e00ab3e0872043c54872f610000ab90e0184a0028fe6c37e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 93ed4324cc8c50cbb708e741d880b2c01eff4c19fb6135d76360d0133386032b [INFO] running `Command { std: "docker" "start" "-a" "93ed4324cc8c50cbb708e741d880b2c01eff4c19fb6135d76360d0133386032b", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Compiling bio-types v0.12.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.68s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/bio_types-d9cf845c3b988fbf) [INFO] running `Command { std: "docker" "inspect" "93ed4324cc8c50cbb708e741d880b2c01eff4c19fb6135d76360d0133386032b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "93ed4324cc8c50cbb708e741d880b2c01eff4c19fb6135d76360d0133386032b", kill_on_drop: false }` [INFO] [stdout] 93ed4324cc8c50cbb708e741d880b2c01eff4c19fb6135d76360d0133386032b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 79b4b4577db063efad34c968c2effa884e861140f7d74b7e4781c4f85c87fb5f [INFO] running `Command { std: "docker" "start" "-a" "79b4b4577db063efad34c968c2effa884e861140f7d74b7e4781c4f85c87fb5f", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bio_types-d9cf845c3b988fbf) [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test alignment::tests::test_path ... ok [INFO] [stdout] test alignment::tests::test_cigar ... ok [INFO] [stdout] test alignment::tests::test_pretty ... ok [INFO] [stdout] test annot::pos::tests::loc_impl ... ok [INFO] [stdout] test annot::pos::tests::pos_accessors ... ok [INFO] [stdout] test strand::tests::test_strand ... ok [INFO] [stdout] test strand::tests::test_req_strand ... ok [INFO] [stdout] test annot::pos::tests::strand_conversion ... ok [INFO] [stdout] test annot::pos::tests::string_representation ... ok [INFO] [stdout] test annot::contig::tests::first_and_last ... ok [INFO] [stdout] test annot::contig::tests::into_outof ... ok [INFO] [stdout] test annot::spliced::tests::into_outof ... ok [INFO] [stdout] test annot::contig::tests::intersection ... ok [INFO] [stdout] test annot::spliced::tests::intersection ... ok [INFO] [stdout] test annot::spliced::tests::length_start_to_contig ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests bio-types [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::new (line 55) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::new (line 57) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_upstream (line 150) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::cigar (line 95) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::add_assign (line 96) ... ok [INFO] [stdout] test src/annot/refids.rs - annot::refids::RefIDSet (line 14) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::path (line 332) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::with_first_length (line 82) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_downstream (line 177) ... ok [INFO] [stdout] test src/sequence.rs - sequence::SequenceReadPairOrientation (line 39) ... ok [INFO] [stdout] test src/strand.rs - strand::ReqStrand::on_strand (line 175) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::sub_assign (line 127) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced::new (line 238) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced (line 208) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig (line 32) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos (line 31) ... ok [INFO] [stdout] test src/annot/mod.rs - annot (line 30) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.88s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "79b4b4577db063efad34c968c2effa884e861140f7d74b7e4781c4f85c87fb5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "79b4b4577db063efad34c968c2effa884e861140f7d74b7e4781c4f85c87fb5f", kill_on_drop: false }` [INFO] [stdout] 79b4b4577db063efad34c968c2effa884e861140f7d74b7e4781c4f85c87fb5f