[INFO] cloning repository https://github.com/zaeleus/noodles-count-features [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f7fde83e4561080c49df65f57b18c5497570bcae [INFO] testing zaeleus/noodles-count-features against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-23/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-23/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-23/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2b617a99c29041f1ac15e2bc42666f7684ac9a485094e35c19a6a748d35f78ea [INFO] running `Command { std: "docker" "start" "-a" "2b617a99c29041f1ac15e2bc42666f7684ac9a485094e35c19a6a748d35f78ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2b617a99c29041f1ac15e2bc42666f7684ac9a485094e35c19a6a748d35f78ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b617a99c29041f1ac15e2bc42666f7684ac9a485094e35c19a6a748d35f78ea", kill_on_drop: false }` [INFO] [stdout] 2b617a99c29041f1ac15e2bc42666f7684ac9a485094e35c19a6a748d35f78ea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 408d3cd06017f670b81df5fc05d4201e46fb588b3c57d0a9e734fd60fcc4a748 [INFO] running `Command { std: "docker" "start" "-a" "408d3cd06017f670b81df5fc05d4201e46fb588b3c57d0a9e734fd60fcc4a748", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.115 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling cc v1.0.72 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling futures-core v0.3.19 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling pin-project-lite v0.2.8 [INFO] [stderr] Compiling futures-channel v0.3.19 [INFO] [stderr] Compiling futures-task v0.3.19 [INFO] [stderr] Compiling futures-sink v0.3.19 [INFO] [stderr] Compiling futures-util v0.3.19 [INFO] [stderr] Compiling crc32fast v1.3.1 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling bytes v1.1.0 [INFO] [stderr] Compiling futures-io v0.3.19 [INFO] [stderr] Compiling slab v0.4.5 [INFO] [stderr] Compiling proc-macro2 v1.0.36 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling time-macros v0.2.3 [INFO] [stderr] Compiling itoa v1.0.1 [INFO] [stderr] Compiling num_threads v0.1.3 [INFO] [stderr] Compiling anyhow v1.0.53 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling once_cell v1.9.0 [INFO] [stderr] Compiling smallvec v1.8.0 [INFO] [stderr] Compiling textwrap v0.14.2 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling no-std-compat v0.4.1 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725) [INFO] [stderr] Compiling thread_local v1.1.4 [INFO] [stderr] Compiling tracing-core v0.1.21 [INFO] [stderr] Compiling sharded-slab v0.1.4 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling libdeflate-sys v0.7.5 [INFO] [stderr] Compiling libmimalloc-sys v0.1.23 [INFO] [stderr] Compiling noodles-gff v0.4.0 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.8.0 [INFO] [stderr] Compiling time v0.3.7 [INFO] [stderr] Compiling tracing-log v0.1.2 [INFO] [stderr] Compiling quote v1.0.15 [INFO] [stderr] Compiling os_str_bytes v6.0.0 [INFO] [stderr] Compiling tokio v1.15.0 [INFO] [stderr] Compiling mimalloc v0.1.27 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling libdeflater v0.7.5 [INFO] [stderr] Compiling tracing-subscriber v0.3.7 [INFO] [stderr] Compiling clap v3.0.13 [INFO] [stderr] Compiling tokio-util v0.6.9 [INFO] [stderr] Compiling futures v0.3.19 [INFO] [stderr] Compiling noodles-bgzf v0.8.0 [INFO] [stderr] Compiling noodles-sam v0.11.0 [INFO] [stderr] Compiling noodles-csi v0.4.3 [INFO] [stderr] Compiling noodles-core v0.3.4 [INFO] [stderr] Compiling noodles-bam v0.14.0 [INFO] [stderr] Compiling noodles v0.18.0 [INFO] [stderr] Compiling git-testament-derive v0.1.13 [INFO] [stderr] Compiling tracing-attributes v0.1.18 [INFO] [stderr] Compiling git-testament v0.2.1 [INFO] [stderr] Compiling tracing v0.1.29 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 20s [INFO] running `Command { std: "docker" "inspect" "408d3cd06017f670b81df5fc05d4201e46fb588b3c57d0a9e734fd60fcc4a748", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "408d3cd06017f670b81df5fc05d4201e46fb588b3c57d0a9e734fd60fcc4a748", kill_on_drop: false }` [INFO] [stdout] 408d3cd06017f670b81df5fc05d4201e46fb588b3c57d0a9e734fd60fcc4a748 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ff49b1b43a0d97b9d8f6dc41ff3ddb1bcd888e37ecfe7ca4b595be0016d63aec [INFO] running `Command { std: "docker" "start" "-a" "ff49b1b43a0d97b9d8f6dc41ff3ddb1bcd888e37ecfe7ca4b595be0016d63aec", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling tokio-macros v1.7.0 [INFO] [stderr] Compiling tokio v1.15.0 [INFO] [stderr] Compiling tokio-util v0.6.9 [INFO] [stderr] Compiling noodles-bgzf v0.8.0 [INFO] [stderr] Compiling noodles-sam v0.11.0 [INFO] [stderr] Compiling noodles-csi v0.4.3 [INFO] [stderr] Compiling noodles-core v0.3.4 [INFO] [stderr] Compiling noodles-bam v0.14.0 [INFO] [stderr] Compiling noodles v0.18.0 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1m 14s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_squab-a45a992ac0e0511d) [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/noodles_squab-53f899c3fed44c1a) [INFO] [stderr] Executable tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-f95dc54d13204163) [INFO] running `Command { std: "docker" "inspect" "ff49b1b43a0d97b9d8f6dc41ff3ddb1bcd888e37ecfe7ca4b595be0016d63aec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ff49b1b43a0d97b9d8f6dc41ff3ddb1bcd888e37ecfe7ca4b595be0016d63aec", kill_on_drop: false }` [INFO] [stdout] ff49b1b43a0d97b9d8f6dc41ff3ddb1bcd888e37ecfe7ca4b595be0016d63aec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-23/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 9b7259f9149a1a4899e819b22b66cb07649a575d221abf645ce6a9c40dafcf29 [INFO] running `Command { std: "docker" "start" "-a" "9b7259f9149a1a4899e819b22b66cb07649a575d221abf645ce6a9c40dafcf29", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.22s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_squab-a45a992ac0e0511d) [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test commands::tests::test_from_str ... ok [INFO] [stdout] test count::context::tests::test_add ... ok [INFO] [stdout] test count::context::tests::test_add_event ... ok [INFO] [stdout] test count::reader::tests::test_read_counts ... ok [INFO] [stdout] test count::tests::test_get_reference ... ok [INFO] [stdout] test count::writer::tests::test_write_counts ... ok [INFO] [stdout] test feature::tests::test_end ... ok [INFO] [stdout] test count::writer::tests::test_write_stats ... ok [INFO] [stdout] test feature::tests::test_is_empty ... ok [INFO] [stdout] test feature::tests::test_len ... ok [INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok [INFO] [stdout] test feature::tests::test_start ... ok [INFO] [stdout] test feature::tests::test_strand ... ok [INFO] [stdout] test match_intervals::tests::test_next ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok [INFO] [stdout] test normalization::method::tests::test_from_str ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test normalization::tests::test_merge_features ... ok [INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok [INFO] [stdout] test normalization::writer::tests::test_write_values ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok [INFO] [stdout] test record_pairs::tests::test_key ... ok [INFO] [stdout] test tests::test_read_features ... ok [INFO] [stdout] test record_pairs::tests::test_mate_key ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/noodles_squab-53f899c3fed44c1a) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-f95dc54d13204163) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.15s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-squab [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "9b7259f9149a1a4899e819b22b66cb07649a575d221abf645ce6a9c40dafcf29", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9b7259f9149a1a4899e819b22b66cb07649a575d221abf645ce6a9c40dafcf29", kill_on_drop: false }` [INFO] [stdout] 9b7259f9149a1a4899e819b22b66cb07649a575d221abf645ce6a9c40dafcf29