[INFO] cloning repository https://github.com/yitapi/analyze_amplicons [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/yitapi/analyze_amplicons" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] be4f0e4f49256237f3026919a2742eb16e73dd75 [INFO] testing yitapi/analyze_amplicons against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/yitapi/analyze_amplicons on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] finished tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] tweaked toml for git repo https://github.com/yitapi/analyze_amplicons written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/yitapi/analyze_amplicons already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 50cd73096565c9cb8ac6968c15b0dfdceb5e5ada8308691772d7a33c2c7f87e5 [INFO] running `Command { std: "docker" "start" "-a" "50cd73096565c9cb8ac6968c15b0dfdceb5e5ada8308691772d7a33c2c7f87e5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "50cd73096565c9cb8ac6968c15b0dfdceb5e5ada8308691772d7a33c2c7f87e5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50cd73096565c9cb8ac6968c15b0dfdceb5e5ada8308691772d7a33c2c7f87e5", kill_on_drop: false }` [INFO] [stdout] 50cd73096565c9cb8ac6968c15b0dfdceb5e5ada8308691772d7a33c2c7f87e5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1d2abc15e737ec29237dcc106530c15a56595948d9c920f3a084bc84250f6f02 [INFO] running `Command { std: "docker" "start" "-a" "1d2abc15e737ec29237dcc106530c15a56595948d9c920f3a084bc84250f6f02", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.1.36 [INFO] [stderr] Compiling libc v0.2.20 [INFO] [stderr] Compiling rustc-serialize v0.3.22 [INFO] [stderr] Compiling bit-vec v0.4.3 [INFO] [stderr] Compiling byteorder v1.0.0 [INFO] [stderr] Compiling either v1.0.2 [INFO] [stderr] Compiling lazy_static v0.2.2 [INFO] [stderr] Compiling quick-error v1.1.0 [INFO] [stderr] Compiling unreachable v0.1.1 [INFO] [stderr] Compiling itertools v0.5.9 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling rand v0.3.15 [INFO] [stderr] Compiling memchr v1.0.1 [INFO] [stderr] Compiling num-integer v0.1.32 [INFO] [stderr] Compiling itertools-num v0.1.1 [INFO] [stderr] Compiling ordered-float v0.3.0 [INFO] [stderr] Compiling num-iter v0.1.32 [INFO] [stderr] Compiling num-bigint v0.1.35 [INFO] [stderr] Compiling num-complex v0.1.35 [INFO] [stderr] Compiling csv v0.15.0 [INFO] [stderr] Compiling num-rational v0.1.35 [INFO] [stderr] Compiling num v0.1.36 [INFO] [stderr] Compiling nalgebra v0.10.1 [INFO] [stderr] Compiling bio v0.10.0 (https://github.com/yitapi/rust-bio#24e457b1) [INFO] [stderr] Compiling analyze_amplicon v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:92:22 [INFO] [stdout] | [INFO] [stdout] 92 | let mut output = try!(File::create(output_file)); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:86:101 [INFO] [stdout] | [INFO] [stdout] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 86 - fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] 86 + fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:350:5 [INFO] [stdout] | [INFO] [stdout] 350 | data_stat(&results, &args[4]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 32.22s [INFO] running `Command { std: "docker" "inspect" "1d2abc15e737ec29237dcc106530c15a56595948d9c920f3a084bc84250f6f02", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1d2abc15e737ec29237dcc106530c15a56595948d9c920f3a084bc84250f6f02", kill_on_drop: false }` [INFO] [stdout] 1d2abc15e737ec29237dcc106530c15a56595948d9c920f3a084bc84250f6f02 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 212beaafeeecce9155c4e6733de6f09cf9222dbdf392b1367d21c625ac23526d [INFO] running `Command { std: "docker" "start" "-a" "212beaafeeecce9155c4e6733de6f09cf9222dbdf392b1367d21c625ac23526d", kill_on_drop: false }` [INFO] [stderr] Compiling analyze_amplicon v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:92:22 [INFO] [stdout] | [INFO] [stdout] 92 | let mut output = try!(File::create(output_file)); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:86:101 [INFO] [stdout] | [INFO] [stdout] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 86 - fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] 86 + fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:350:5 [INFO] [stdout] | [INFO] [stdout] 350 | data_stat(&results, &args[4]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.23s [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/analyze_amplicon-201fed1e6dd84112) [INFO] running `Command { std: "docker" "inspect" "212beaafeeecce9155c4e6733de6f09cf9222dbdf392b1367d21c625ac23526d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "212beaafeeecce9155c4e6733de6f09cf9222dbdf392b1367d21c625ac23526d", kill_on_drop: false }` [INFO] [stdout] 212beaafeeecce9155c4e6733de6f09cf9222dbdf392b1367d21c625ac23526d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 67fb23d67a2194a82811b6380a2408cc4eff1d84bf65263375106e556a6a3351 [INFO] running `Command { std: "docker" "start" "-a" "67fb23d67a2194a82811b6380a2408cc4eff1d84bf65263375106e556a6a3351", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/main.rs:92:22 [INFO] [stderr] | [INFO] [stderr] 92 | let mut output = try!(File::create(output_file)); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/main.rs:137:9 [INFO] [stderr] | [INFO] [stderr] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:86:101 [INFO] [stderr] | [INFO] [stderr] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 86 - fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stderr] 86 + fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:350:5 [INFO] [stderr] | [INFO] [stderr] 350 | data_stat(&results, &args[4]); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: `analyze_amplicon` (bin "analyze_amplicon" test) generated 4 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/analyze_amplicon-201fed1e6dd84112) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "67fb23d67a2194a82811b6380a2408cc4eff1d84bf65263375106e556a6a3351", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "67fb23d67a2194a82811b6380a2408cc4eff1d84bf65263375106e556a6a3351", kill_on_drop: false }` [INFO] [stdout] 67fb23d67a2194a82811b6380a2408cc4eff1d84bf65263375106e556a6a3351