[INFO] cloning repository https://github.com/tfursten/mtsv_tools [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tfursten/mtsv_tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftfursten%2Fmtsv_tools", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftfursten%2Fmtsv_tools'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 67ea87af5bba89ed8e8979d82e8dbea6fc9f4fa6 [INFO] testing tfursten/mtsv_tools against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftfursten%2Fmtsv_tools" "/workspace/builds/worker-58/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-58/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/tfursten/mtsv_tools on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/tfursten/mtsv_tools [INFO] finished tweaking git repo https://github.com/tfursten/mtsv_tools [INFO] tweaked toml for git repo https://github.com/tfursten/mtsv_tools written to /workspace/builds/worker-58/source/Cargo.toml [INFO] crate git repo https://github.com/tfursten/mtsv_tools already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 65a530118556db3e98e117f9270e61bb2077159295bd554a807b67c6ea848c6c [INFO] running `Command { std: "docker" "start" "-a" "65a530118556db3e98e117f9270e61bb2077159295bd554a807b67c6ea848c6c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "65a530118556db3e98e117f9270e61bb2077159295bd554a807b67c6ea848c6c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "65a530118556db3e98e117f9270e61bb2077159295bd554a807b67c6ea848c6c", kill_on_drop: false }` [INFO] [stdout] 65a530118556db3e98e117f9270e61bb2077159295bd554a807b67c6ea848c6c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 159773e2e2c0f82567a17512121c67fb71357e987f51cdec45c59c115cf063ca [INFO] running `Command { std: "docker" "start" "-a" "159773e2e2c0f82567a17512121c67fb71357e987f51cdec45c59c115cf063ca", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.36 [INFO] [stderr] Compiling rustc-serialize v0.3.24 [INFO] [stderr] Compiling num-traits v0.2.0 [INFO] [stderr] Compiling cfg-if v0.1.2 [INFO] [stderr] Compiling cc v1.0.4 [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling winapi v0.2.8 [INFO] [stderr] Compiling byteorder v0.5.3 [INFO] [stderr] Compiling fixedbitset v0.1.8 [INFO] [stderr] Compiling unicode-width v0.1.4 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling regex-syntax v0.3.9 [INFO] [stderr] Compiling utf8-ranges v0.1.3 [INFO] [stderr] Compiling vec_map v0.6.0 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling bitflags v1.0.1 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling itertools v0.4.19 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling crossbeam v0.2.12 [INFO] [stderr] Compiling serde v0.7.15 [INFO] [stderr] Compiling serde v1.0.27 [INFO] [stderr] Compiling log v0.4.1 [INFO] [stderr] Compiling textwrap v0.9.0 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Compiling bit-set v0.3.0 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling clap v2.29.4 [INFO] [stderr] Compiling rand v0.4.2 [INFO] [stderr] Compiling time v0.1.39 [INFO] [stderr] Compiling memchr v0.1.11 [INFO] [stderr] Compiling filetime v0.1.15 [INFO] [stderr] Compiling xattr v0.1.11 [INFO] [stderr] Compiling num-integer v0.1.36 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling aho-corasick v0.5.3 [INFO] [stderr] Compiling thread-id v2.0.0 [INFO] [stderr] Compiling tar v0.4.14 [INFO] [stderr] Compiling miniz-sys v0.1.10 [INFO] [stderr] Compiling ssw v0.1.0 (/opt/rustwide/workdir/ssw) [INFO] [stderr] Compiling num-iter v0.1.35 [INFO] [stderr] Compiling thread_local v0.2.7 [INFO] [stderr] Compiling syncbox v0.2.4 [INFO] [stderr] Compiling regex v0.1.80 [INFO] [stderr] Compiling cue v0.1.0 [INFO] [stderr] Compiling flate2 v0.2.20 [INFO] [stderr] Compiling num-bigint v0.1.42 [INFO] [stderr] Compiling num-complex v0.1.42 [INFO] [stderr] Compiling petgraph v0.2.7 (/opt/rustwide/workdir/vendor/petgraph) [INFO] [stderr] Compiling csv v0.14.7 [INFO] [stderr] Compiling bincode v0.5.9 [INFO] [stderr] Compiling env_logger v0.3.5 [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/lib.rs:64:30 [INFO] [stdout] | [INFO] [stdout] 64 | #[derive(Copy, Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/lib.rs:64:46 [INFO] [stdout] | [INFO] [stdout] 64 | #[derive(Copy, Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:71:68 [INFO] [stdout] | [INFO] [stdout] 71 | #[derive(Copy, Clone, Debug, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:71:84 [INFO] [stdout] | [INFO] [stdout] 71 | #[derive(Copy, Clone, Debug, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:109:61 [INFO] [stdout] | [INFO] [stdout] 109 | #[derive(Copy, Clone, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:109:77 [INFO] [stdout] | [INFO] [stdout] 109 | #[derive(Copy, Clone, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:153:24 [INFO] [stdout] | [INFO] [stdout] 153 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:153:40 [INFO] [stdout] | [INFO] [stdout] 153 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:171:24 [INFO] [stdout] | [INFO] [stdout] 171 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:171:40 [INFO] [stdout] | [INFO] [stdout] 171 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:275:10 [INFO] [stdout] | [INFO] [stdout] 275 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:275:26 [INFO] [stdout] | [INFO] [stdout] 275 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:140:9 [INFO] [stdout] | [INFO] [stdout] 140 | try!(write!(f, "EdgeIndex(")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:142:13 [INFO] [stdout] | [INFO] [stdout] 142 | try!(write!(f, "End")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:144:13 [INFO] [stdout] | [INFO] [stdout] 144 | try!(write!(f, "{}", self.index())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:307:9 [INFO] [stdout] | [INFO] [stdout] 307 | try!(write!(f, "Graph<{}> {{", etype)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:311:9 [INFO] [stdout] | [INFO] [stdout] 311 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:322:9 [INFO] [stdout] | [INFO] [stdout] 322 | try!(write!(f, "}}")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:313:13 [INFO] [stdout] | [INFO] [stdout] 313 | try!(writeln!(f, "{}{}: Node({:?}),", indent, index, n.weight)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:316:13 [INFO] [stdout] | [INFO] [stdout] 316 | try!(writeln!(f, "{}{}: Edge(from={}, to={}, weight={:?}),", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:66:9 [INFO] [stdout] | [INFO] [stdout] 66 | try!(writeln!(f, "{} {{", TYPE[g.is_directed() as usize])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | try!(writeln!(f, "}}")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:70:13 [INFO] [stdout] | [INFO] [stdout] 70 | try!(write!(f, "{}{}", INDENT, index.index())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:72:17 [INFO] [stdout] | [INFO] [stdout] 72 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:74:17 [INFO] [stdout] | [INFO] [stdout] 74 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:75:17 [INFO] [stdout] | [INFO] [stdout] 75 | try!(node_fmt(&g[index], &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:76:17 [INFO] [stdout] | [INFO] [stdout] 76 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | try!(write!(f, "{}{} {} {}", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:88:17 [INFO] [stdout] | [INFO] [stdout] 88 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:90:17 [INFO] [stdout] | [INFO] [stdout] 90 | try!(writeln!(f, " [label=\"{}\"]", i)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:92:17 [INFO] [stdout] | [INFO] [stdout] 92 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:93:17 [INFO] [stdout] | [INFO] [stdout] 93 | try!(edge_fmt(&edge.weight, &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:94:17 [INFO] [stdout] | [INFO] [stdout] 94 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:136:9 [INFO] [stdout] | [INFO] [stdout] 136 | try!(writeln!(f, "{} {{", TYPE[0])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:170:9 [INFO] [stdout] | [INFO] [stdout] 170 | try!(writeln!(f, "}}")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:143:13 [INFO] [stdout] | [INFO] [stdout] 143 | try!(write!(f, "{}{}", INDENT, i)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:145:17 [INFO] [stdout] | [INFO] [stdout] 145 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:147:17 [INFO] [stdout] | [INFO] [stdout] 147 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:148:17 [INFO] [stdout] | [INFO] [stdout] 148 | try!(node_fmt(&node, &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:149:17 [INFO] [stdout] | [INFO] [stdout] 149 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:154:13 [INFO] [stdout] | [INFO] [stdout] 154 | try!(write!(f, "{}{} {} {}", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:160:17 [INFO] [stdout] | [INFO] [stdout] 160 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:162:17 [INFO] [stdout] | [INFO] [stdout] 162 | try!(writeln!(f, " [label=\"{}\"]", i)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:164:17 [INFO] [stdout] | [INFO] [stdout] 164 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:165:17 [INFO] [stdout] | [INFO] [stdout] 165 | try!(edge_fmt(&edge_weight, &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:166:17 [INFO] [stdout] | [INFO] [stdout] 166 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:202:13 [INFO] [stdout] | [INFO] [stdout] 202 | try!(self.write_char(c)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:209:20 [INFO] [stdout] | [INFO] [stdout] 209 | '"' => try!(self.0.write_char('\\')), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/visit.rs:181:25 [INFO] [stdout] | [INFO] [stdout] 181 | fn visit(&mut self, N) -> bool; [INFO] [stdout] | ^ help: try naming the parameter or explicitly ignoring it: `_: N` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(anonymous_parameters)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/visit.rs:182:26 [INFO] [stdout] | [INFO] [stdout] 182 | fn is_visited(&self, &N) -> bool; [INFO] [stdout] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &N` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/visit.rs:228:25 [INFO] [stdout] | [INFO] [stdout] 228 | fn reset_map(&self, &mut Self::Map); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: try naming the parameter or explicitly ignoring it: `_: &mut Self::Map` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/isomorphism.rs:205:22 [INFO] [stdout] | [INFO] [stdout] 205 | fn eq(&mut self, &T, &T) -> bool; [INFO] [stdout] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &T` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/isomorphism.rs:205:26 [INFO] [stdout] | [INFO] [stdout] 205 | fn eq(&mut self, &T, &T) -> bool; [INFO] [stdout] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &T` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:62:33 [INFO] [stdout] | [INFO] [stdout] 62 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 62 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 62 + where F: FnMut(&N, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:62:40 [INFO] [stdout] | [INFO] [stdout] 62 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 62 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 62 + where F: FnMut(&N, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:63:33 [INFO] [stdout] | [INFO] [stdout] 63 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 63 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 63 + G: FnMut(&E, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:63:40 [INFO] [stdout] | [INFO] [stdout] 63 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 63 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 63 + G: FnMut(&E, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:132:33 [INFO] [stdout] | [INFO] [stdout] 132 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 132 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 132 + where F: FnMut(&N, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:132:40 [INFO] [stdout] | [INFO] [stdout] 132 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 132 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 132 + where F: FnMut(&N, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:133:33 [INFO] [stdout] | [INFO] [stdout] 133 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 133 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 133 + G: FnMut(&E, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:133:40 [INFO] [stdout] | [INFO] [stdout] 133 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 133 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 133 + G: FnMut(&E, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling daggy v0.4.0 (/opt/rustwide/workdir/vendor/daggy) [INFO] [stdout] warning: 61 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/daggy/src/lib.rs:63:24 [INFO] [stdout] | [INFO] [stdout] 63 | #[derive(Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/daggy/src/lib.rs:63:40 [INFO] [stdout] | [INFO] [stdout] 63 | #[derive(Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling num-rational v0.1.41 [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling num v0.1.41 [INFO] [stderr] Compiling nalgebra v0.4.0 [INFO] [stderr] Compiling chrono v0.2.25 [INFO] [stderr] Compiling stopwatch v0.0.6 [INFO] [stderr] Compiling bio v0.5.0 (/opt/rustwide/workdir/vendor/rust-bio) [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/bwt.rs:81:38 [INFO] [stdout] | [INFO] [stdout] 81 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/bwt.rs:81:54 [INFO] [stdout] | [INFO] [stdout] 81 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/fmindex.rs:16:38 [INFO] [stdout] | [INFO] [stdout] 16 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/fmindex.rs:16:54 [INFO] [stdout] | [INFO] [stdout] 16 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:54:9 [INFO] [stdout] | [INFO] [stdout] 54 | try!(self.reader.read_line(&mut record.header)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:60:13 [INFO] [stdout] | [INFO] [stdout] 60 | try!(self.reader.read_line(&mut record.seq)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:61:13 [INFO] [stdout] | [INFO] [stdout] 61 | try!(self.reader.read_line(&mut self.sep_line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:62:13 [INFO] [stdout] | [INFO] [stdout] 62 | try!(self.reader.read_line(&mut record.qual)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:213:9 [INFO] [stdout] | [INFO] [stdout] 213 | try!(self.writer.write(b"@")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:214:9 [INFO] [stdout] | [INFO] [stdout] 214 | try!(self.writer.write(id.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:219:9 [INFO] [stdout] | [INFO] [stdout] 219 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:220:9 [INFO] [stdout] | [INFO] [stdout] 220 | try!(self.writer.write(seq)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:221:9 [INFO] [stdout] | [INFO] [stdout] 221 | try!(self.writer.write(b"\n+\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:222:9 [INFO] [stdout] | [INFO] [stdout] 222 | try!(self.writer.write(qual)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:223:9 [INFO] [stdout] | [INFO] [stdout] 223 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:216:13 [INFO] [stdout] | [INFO] [stdout] 216 | try!(self.writer.write(b" ")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:217:13 [INFO] [stdout] | [INFO] [stdout] 217 | try!(self.writer.write(desc.unwrap().as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:231:10 [INFO] [stdout] | [INFO] [stdout] 231 | #[derive(RustcDecodable, Debug, Copy, Clone)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:57:13 [INFO] [stdout] | [INFO] [stdout] 57 | try!(self.reader.read_line(&mut self.line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:69:13 [INFO] [stdout] | [INFO] [stdout] 69 | try!(self.reader.read_line(&mut self.line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:100:57 [INFO] [stdout] | [INFO] [stdout] 100 | let (name, record): (String, IndexRecord) = try!(row); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:152:21 [INFO] [stdout] | [INFO] [stdout] 152 | let index = try!(Index::with_fasta_file(path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:165:21 [INFO] [stdout] | [INFO] [stdout] 165 | let index = try!(Index::new(fai)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:211:17 [INFO] [stdout] | [INFO] [stdout] 211 | try!(self.reader.seek(io::SeekFrom::Start(offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:220:17 [INFO] [stdout] | [INFO] [stdout] 220 | try!(self.reader.read(&mut buf[..line_stop as usize])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:215:21 [INFO] [stdout] | [INFO] [stdout] 215 | try!(self.reader.read(&mut buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:274:9 [INFO] [stdout] | [INFO] [stdout] 274 | try!(self.writer.write(b">")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:275:9 [INFO] [stdout] | [INFO] [stdout] 275 | try!(self.writer.write(id.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:280:9 [INFO] [stdout] | [INFO] [stdout] 280 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:281:9 [INFO] [stdout] | [INFO] [stdout] 281 | try!(self.writer.write(seq)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:282:9 [INFO] [stdout] | [INFO] [stdout] 282 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:277:13 [INFO] [stdout] | [INFO] [stdout] 277 | try!(self.writer.write(b" ")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:278:13 [INFO] [stdout] | [INFO] [stdout] 278 | try!(self.writer.write(desc.unwrap().as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/io/bed.rs:116:10 [INFO] [stdout] | [INFO] [stdout] 116 | #[derive(RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:124:26 [INFO] [stdout] | [INFO] [stdout] 124 | self.header[1..].trim_right().splitn(2, ' ').next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:129:26 [INFO] [stdout] | [INFO] [stdout] 129 | self.header[1..].trim_right().splitn(2, ' ').skip(1).next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:134:18 [INFO] [stdout] | [INFO] [stdout] 134 | self.seq.trim_right().as_bytes() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:139:19 [INFO] [stdout] | [INFO] [stdout] 139 | self.qual.trim_right().as_bytes() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:73:44 [INFO] [stdout] | [INFO] [stdout] 73 | record.seq.push_str(&self.line.trim_right()); [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:333:21 [INFO] [stdout] | [INFO] [stdout] 333 | self.header.trim_right().splitn(2, ' ').next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:338:21 [INFO] [stdout] | [INFO] [stdout] 338 | self.header.trim_right().splitn(2, ' ').skip(1).next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> vendor/rust-bio/src/alphabets/dna.rs:54:17 [INFO] [stdout] | [INFO] [stdout] 54 | for (v, mut a) in comp.iter_mut().enumerate() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> vendor/rust-bio/src/data_structures/qgram_index.rs:71:13 [INFO] [stdout] | [INFO] [stdout] 71 | for mut a in address.iter_mut().skip(1) { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> vendor/rust-bio/src/alignment/pairwise.rs:227:25 [INFO] [stdout] | [INFO] [stdout] 227 | let mut s = &mut self.S[k]; [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling mtsv v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:49:5 [INFO] [stdout] | [INFO] [stdout] 49 | try!(reader.records().next().unwrap()); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:48:18 [INFO] [stdout] | [INFO] [stdout] 48 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:52:18 [INFO] [stdout] | [INFO] [stdout] 52 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:53:23 [INFO] [stdout] | [INFO] [stdout] 53 | let output_file = try!(File::create(Path::new(results_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:56:18 [INFO] [stdout] | [INFO] [stdout] 56 | let filter = try!(from_file::(index_path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:158:5 [INFO] [stdout] | [INFO] [stdout] 158 | try!(writer.write(result_line.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/builder.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | try!(write_to_file(&index, index_path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/builder.rs:20:21 [INFO] [stdout] | [INFO] [stdout] 20 | let taxon_map = try!(parse_fasta_db(records)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:32:37 [INFO] [stdout] | [INFO] [stdout] 32 | let mut writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:42:30 [INFO] [stdout] | [INFO] [stdout] 42 | bytes_written += try!(writer.write(b">")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:43:30 [INFO] [stdout] | [INFO] [stdout] 43 | bytes_written += try!(writer.write(gi_str.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:44:30 [INFO] [stdout] | [INFO] [stdout] 44 | bytes_written += try!(writer.write(b"-")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:45:30 [INFO] [stdout] | [INFO] [stdout] 45 | bytes_written += try!(writer.write(tid_str.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:46:30 [INFO] [stdout] | [INFO] [stdout] 46 | bytes_written += try!(writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:47:30 [INFO] [stdout] | [INFO] [stdout] 47 | bytes_written += try!(writer.write(&sequence)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:48:30 [INFO] [stdout] | [INFO] [stdout] 48 | bytes_written += try!(writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:57:41 [INFO] [stdout] | [INFO] [stdout] 57 | writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/collapse.rs:19:34 [INFO] [stdout] | [INFO] [stdout] 19 | let (readid, hits) = try!(res); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/collapse.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | try!(write_single_line(header, hits, write_to)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:22:61 [INFO] [stdout] | [INFO] [stdout] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:22:77 [INFO] [stdout] | [INFO] [stdout] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:26:61 [INFO] [stdout] | [INFO] [stdout] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:26:77 [INFO] [stdout] | [INFO] [stdout] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:31:68 [INFO] [stdout] | [INFO] [stdout] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:31:84 [INFO] [stdout] | [INFO] [stdout] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:42:31 [INFO] [stdout] | [INFO] [stdout] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:42:47 [INFO] [stdout] | [INFO] [stdout] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:21:13 [INFO] [stdout] | [INFO] [stdout] 21 | let f = try!(File::open(Path::new(p))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 23 | Ok(try!(decode_from(&mut reader, SizeLimit::Infinite))) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:31:13 [INFO] [stdout] | [INFO] [stdout] 31 | let f = try!(File::create(Path::new(p))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:33:8 [INFO] [stdout] | [INFO] [stdout] 33 | Ok(try!(encode_into(t, &mut writer, SizeLimit::Infinite))) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:44:22 [INFO] [stdout] | [INFO] [stdout] 44 | let record = try!(record); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:46:28 [INFO] [stdout] | [INFO] [stdout] 46 | let (gi, tax_id) = try!(parse_read_header(record.header())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:18:37 [INFO] [stdout] | [INFO] [stdout] 18 | let mut writer = BufWriter::new(try!(File::create(&config.outfile))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:23:26 [INFO] [stdout] | [INFO] [stdout] 23 | readers.push((i, try!(Reader::from_file(path)))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:67:9 [INFO] [stdout] | [INFO] [stdout] 67 | try!(write!(&mut writer, ">R{}", num + 1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:71:9 [INFO] [stdout] | [INFO] [stdout] 71 | try!(write!(&mut writer, "\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:73:9 [INFO] [stdout] | [INFO] [stdout] 73 | try!(writer.write_all(&mut read)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:74:9 [INFO] [stdout] | [INFO] [stdout] 74 | try!(write!(&mut writer, "\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:69:13 [INFO] [stdout] | [INFO] [stdout] 69 | try!(write!(&mut writer, "_{}", c)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:16:32 [INFO] [stdout] | [INFO] [stdout] 16 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:38:32 [INFO] [stdout] | [INFO] [stdout] 38 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:49:32 [INFO] [stdout] | [INFO] [stdout] 49 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:74:32 [INFO] [stdout] | [INFO] [stdout] 74 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:87:15 [INFO] [stdout] | [INFO] [stdout] 87 | let rdr = try!(Reader::from_file(p)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:94:22 [INFO] [stdout] | [INFO] [stdout] 94 | let record = try!(record); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:104:11 [INFO] [stdout] | [INFO] [stdout] 104 | 67...255 => QualityEncoding::Illumina15, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(ellipsis_inclusive_range_patterns)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:105:11 [INFO] [stdout] | [INFO] [stdout] 105 | 64...66 => QualityEncoding::Illumina13, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:106:11 [INFO] [stdout] | [INFO] [stdout] 106 | 59...63 => QualityEncoding::Solexa, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:123:5 [INFO] [stdout] | [INFO] [stdout] 123 | try!(rdr.read_to_string(&mut buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:119:13 [INFO] [stdout] | [INFO] [stdout] 119 | let f = try!(File::open(f)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:196:28 [INFO] [stdout] | [INFO] [stdout] 196 | let adapters = try!(read_adapters(&Path::new(f), tolerance)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:212:18 [INFO] [stdout] | [INFO] [stdout] 212 | let md = try!(read_fastq_metadata(&p)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:314:19 [INFO] [stdout] | [INFO] [stdout] 314 | let mut rdr = try!(fastq::Reader::from_file(Path::new(&s)) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:65:10 [INFO] [stdout] | [INFO] [stdout] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:65:26 [INFO] [stdout] | [INFO] [stdout] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:72:10 [INFO] [stdout] | [INFO] [stdout] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:72:26 [INFO] [stdout] | [INFO] [stdout] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:394:23 [INFO] [stdout] | [INFO] [stdout] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:394:39 [INFO] [stdout] | [INFO] [stdout] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:401:45 [INFO] [stdout] | [INFO] [stdout] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:401:61 [INFO] [stdout] | [INFO] [stdout] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tax_tree.rs:296:33 [INFO] [stdout] | [INFO] [stdout] 296 | let (children, ranks) = try!(Self::tokenize_nodes(node_dump)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tax_tree.rs:361:24 [INFO] [stdout] | [INFO] [stdout] 361 | let line = try!(line); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/io.rs:64:13 [INFO] [stdout] | [INFO] [stdout] 64 | -> Box)>> + 'a> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 64 - -> Box)>> + 'a> { [INFO] [stdout] 64 + -> Box)>> + 'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/tax_tree.rs:82:39 [INFO] [stdout] | [INFO] [stdout] 82 | all_hits: Box)>>>, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 82 - all_hits: Box)>>>, [INFO] [stdout] 82 + all_hits: Box)>>>, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 64 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 66 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:80:36 [INFO] [stdout] | [INFO] [stdout] 80 | let mut archive = Archive::new(try!(GzDecoder::new(io::BufReader::new(try!(File::open(p)))))); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:80:75 [INFO] [stdout] | [INFO] [stdout] 80 | let mut archive = Archive::new(try!(GzDecoder::new(io::BufReader::new(try!(File::open(p)))))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:82:18 [INFO] [stdout] | [INFO] [stdout] 82 | for entry in try!(archive.entries()) { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:86:9 [INFO] [stdout] | [INFO] [stdout] 86 | try!(entry.read_to_end(&mut bytes)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:83:25 [INFO] [stdout] | [INFO] [stdout] 83 | let mut entry = try!(entry); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:88:20 [INFO] [stdout] | [INFO] [stdout] 88 | let path = try!(entry.path()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 8.75s [INFO] running `Command { std: "docker" "inspect" "159773e2e2c0f82567a17512121c67fb71357e987f51cdec45c59c115cf063ca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "159773e2e2c0f82567a17512121c67fb71357e987f51cdec45c59c115cf063ca", kill_on_drop: false }` [INFO] [stdout] 159773e2e2c0f82567a17512121c67fb71357e987f51cdec45c59c115cf063ca [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 44f7c8a4eb50d627ccfd53f2c7882c94da00733cbd5e61e74d016c21521b4a49 [INFO] running `Command { std: "docker" "start" "-a" "44f7c8a4eb50d627ccfd53f2c7882c94da00733cbd5e61e74d016c21521b4a49", kill_on_drop: false }` [INFO] [stderr] Compiling rand v0.3.22 [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/lib.rs:64:30 [INFO] [stdout] | [INFO] [stdout] 64 | #[derive(Copy, Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/lib.rs:64:46 [INFO] [stdout] | [INFO] [stdout] 64 | #[derive(Copy, Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:71:68 [INFO] [stdout] | [INFO] [stdout] 71 | #[derive(Copy, Clone, Debug, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:71:84 [INFO] [stdout] | [INFO] [stdout] 71 | #[derive(Copy, Clone, Debug, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:109:61 [INFO] [stdout] | [INFO] [stdout] 109 | #[derive(Copy, Clone, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:109:77 [INFO] [stdout] | [INFO] [stdout] 109 | #[derive(Copy, Clone, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:153:24 [INFO] [stdout] | [INFO] [stdout] 153 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:153:40 [INFO] [stdout] | [INFO] [stdout] 153 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:171:24 [INFO] [stdout] | [INFO] [stdout] 171 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:171:40 [INFO] [stdout] | [INFO] [stdout] 171 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:275:10 [INFO] [stdout] | [INFO] [stdout] 275 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/petgraph/src/graph.rs:275:26 [INFO] [stdout] | [INFO] [stdout] 275 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:140:9 [INFO] [stdout] | [INFO] [stdout] 140 | try!(write!(f, "EdgeIndex(")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:142:13 [INFO] [stdout] | [INFO] [stdout] 142 | try!(write!(f, "End")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:144:13 [INFO] [stdout] | [INFO] [stdout] 144 | try!(write!(f, "{}", self.index())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:307:9 [INFO] [stdout] | [INFO] [stdout] 307 | try!(write!(f, "Graph<{}> {{", etype)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:311:9 [INFO] [stdout] | [INFO] [stdout] 311 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:322:9 [INFO] [stdout] | [INFO] [stdout] 322 | try!(write!(f, "}}")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:313:13 [INFO] [stdout] | [INFO] [stdout] 313 | try!(writeln!(f, "{}{}: Node({:?}),", indent, index, n.weight)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/graph.rs:316:13 [INFO] [stdout] | [INFO] [stdout] 316 | try!(writeln!(f, "{}{}: Edge(from={}, to={}, weight={:?}),", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:66:9 [INFO] [stdout] | [INFO] [stdout] 66 | try!(writeln!(f, "{} {{", TYPE[g.is_directed() as usize])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | try!(writeln!(f, "}}")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:70:13 [INFO] [stdout] | [INFO] [stdout] 70 | try!(write!(f, "{}{}", INDENT, index.index())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:72:17 [INFO] [stdout] | [INFO] [stdout] 72 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:74:17 [INFO] [stdout] | [INFO] [stdout] 74 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:75:17 [INFO] [stdout] | [INFO] [stdout] 75 | try!(node_fmt(&g[index], &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:76:17 [INFO] [stdout] | [INFO] [stdout] 76 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | try!(write!(f, "{}{} {} {}", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:88:17 [INFO] [stdout] | [INFO] [stdout] 88 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:90:17 [INFO] [stdout] | [INFO] [stdout] 90 | try!(writeln!(f, " [label=\"{}\"]", i)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:92:17 [INFO] [stdout] | [INFO] [stdout] 92 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:93:17 [INFO] [stdout] | [INFO] [stdout] 93 | try!(edge_fmt(&edge.weight, &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:94:17 [INFO] [stdout] | [INFO] [stdout] 94 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:136:9 [INFO] [stdout] | [INFO] [stdout] 136 | try!(writeln!(f, "{} {{", TYPE[0])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:170:9 [INFO] [stdout] | [INFO] [stdout] 170 | try!(writeln!(f, "}}")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:143:13 [INFO] [stdout] | [INFO] [stdout] 143 | try!(write!(f, "{}{}", INDENT, i)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:145:17 [INFO] [stdout] | [INFO] [stdout] 145 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:147:17 [INFO] [stdout] | [INFO] [stdout] 147 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:148:17 [INFO] [stdout] | [INFO] [stdout] 148 | try!(node_fmt(&node, &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:149:17 [INFO] [stdout] | [INFO] [stdout] 149 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:154:13 [INFO] [stdout] | [INFO] [stdout] 154 | try!(write!(f, "{}{} {} {}", [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:160:17 [INFO] [stdout] | [INFO] [stdout] 160 | try!(writeln!(f, "")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:162:17 [INFO] [stdout] | [INFO] [stdout] 162 | try!(writeln!(f, " [label=\"{}\"]", i)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:164:17 [INFO] [stdout] | [INFO] [stdout] 164 | try!(write!(f, " [label=\"")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:165:17 [INFO] [stdout] | [INFO] [stdout] 165 | try!(edge_fmt(&edge_weight, &mut |d| Escaped(d).fmt(f))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:166:17 [INFO] [stdout] | [INFO] [stdout] 166 | try!(writeln!(f, "\"]")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:202:13 [INFO] [stdout] | [INFO] [stdout] 202 | try!(self.write_char(c)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/petgraph/src/dot.rs:209:20 [INFO] [stdout] | [INFO] [stdout] 209 | '"' => try!(self.0.write_char('\\')), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/visit.rs:181:25 [INFO] [stdout] | [INFO] [stdout] 181 | fn visit(&mut self, N) -> bool; [INFO] [stdout] | ^ help: try naming the parameter or explicitly ignoring it: `_: N` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(anonymous_parameters)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/visit.rs:182:26 [INFO] [stdout] | [INFO] [stdout] 182 | fn is_visited(&self, &N) -> bool; [INFO] [stdout] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &N` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/visit.rs:228:25 [INFO] [stdout] | [INFO] [stdout] 228 | fn reset_map(&self, &mut Self::Map); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: try naming the parameter or explicitly ignoring it: `_: &mut Self::Map` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/isomorphism.rs:205:22 [INFO] [stdout] | [INFO] [stdout] 205 | fn eq(&mut self, &T, &T) -> bool; [INFO] [stdout] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &T` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stdout] --> vendor/petgraph/src/isomorphism.rs:205:26 [INFO] [stdout] | [INFO] [stdout] 205 | fn eq(&mut self, &T, &T) -> bool; [INFO] [stdout] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &T` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stdout] = note: for more information, see issue #41686 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:62:33 [INFO] [stdout] | [INFO] [stdout] 62 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 62 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 62 + where F: FnMut(&N, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:62:40 [INFO] [stdout] | [INFO] [stdout] 62 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 62 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 62 + where F: FnMut(&N, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:63:33 [INFO] [stdout] | [INFO] [stdout] 63 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 63 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 63 + G: FnMut(&E, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:63:40 [INFO] [stdout] | [INFO] [stdout] 63 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 63 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 63 + G: FnMut(&E, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:132:33 [INFO] [stdout] | [INFO] [stdout] 132 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 132 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 132 + where F: FnMut(&N, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:132:40 [INFO] [stdout] | [INFO] [stdout] 132 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 132 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 132 + where F: FnMut(&N, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:133:33 [INFO] [stdout] | [INFO] [stdout] 133 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 133 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 133 + G: FnMut(&E, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> vendor/petgraph/src/dot.rs:133:40 [INFO] [stdout] | [INFO] [stdout] 133 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 133 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] 133 + G: FnMut(&E, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 61 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/daggy/src/lib.rs:63:24 [INFO] [stdout] | [INFO] [stdout] 63 | #[derive(Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/daggy/src/lib.rs:63:40 [INFO] [stdout] | [INFO] [stdout] 63 | #[derive(Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/bwt.rs:81:38 [INFO] [stdout] | [INFO] [stdout] 81 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/bwt.rs:81:54 [INFO] [stdout] | [INFO] [stdout] 81 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/fmindex.rs:16:38 [INFO] [stdout] | [INFO] [stdout] 16 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/data_structures/fmindex.rs:16:54 [INFO] [stdout] | [INFO] [stdout] 16 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:54:9 [INFO] [stdout] | [INFO] [stdout] 54 | try!(self.reader.read_line(&mut record.header)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:60:13 [INFO] [stdout] | [INFO] [stdout] 60 | try!(self.reader.read_line(&mut record.seq)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:61:13 [INFO] [stdout] | [INFO] [stdout] 61 | try!(self.reader.read_line(&mut self.sep_line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:62:13 [INFO] [stdout] | [INFO] [stdout] 62 | try!(self.reader.read_line(&mut record.qual)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:213:9 [INFO] [stdout] | [INFO] [stdout] 213 | try!(self.writer.write(b"@")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:214:9 [INFO] [stdout] | [INFO] [stdout] 214 | try!(self.writer.write(id.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:219:9 [INFO] [stdout] | [INFO] [stdout] 219 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:220:9 [INFO] [stdout] | [INFO] [stdout] 220 | try!(self.writer.write(seq)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:221:9 [INFO] [stdout] | [INFO] [stdout] 221 | try!(self.writer.write(b"\n+\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:222:9 [INFO] [stdout] | [INFO] [stdout] 222 | try!(self.writer.write(qual)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:223:9 [INFO] [stdout] | [INFO] [stdout] 223 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:216:13 [INFO] [stdout] | [INFO] [stdout] 216 | try!(self.writer.write(b" ")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:217:13 [INFO] [stdout] | [INFO] [stdout] 217 | try!(self.writer.write(desc.unwrap().as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:231:10 [INFO] [stdout] | [INFO] [stdout] 231 | #[derive(RustcDecodable, Debug, Copy, Clone)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:57:13 [INFO] [stdout] | [INFO] [stdout] 57 | try!(self.reader.read_line(&mut self.line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:69:13 [INFO] [stdout] | [INFO] [stdout] 69 | try!(self.reader.read_line(&mut self.line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:100:57 [INFO] [stdout] | [INFO] [stdout] 100 | let (name, record): (String, IndexRecord) = try!(row); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:152:21 [INFO] [stdout] | [INFO] [stdout] 152 | let index = try!(Index::with_fasta_file(path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:165:21 [INFO] [stdout] | [INFO] [stdout] 165 | let index = try!(Index::new(fai)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:211:17 [INFO] [stdout] | [INFO] [stdout] 211 | try!(self.reader.seek(io::SeekFrom::Start(offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:220:17 [INFO] [stdout] | [INFO] [stdout] 220 | try!(self.reader.read(&mut buf[..line_stop as usize])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:215:21 [INFO] [stdout] | [INFO] [stdout] 215 | try!(self.reader.read(&mut buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:274:9 [INFO] [stdout] | [INFO] [stdout] 274 | try!(self.writer.write(b">")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:275:9 [INFO] [stdout] | [INFO] [stdout] 275 | try!(self.writer.write(id.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:280:9 [INFO] [stdout] | [INFO] [stdout] 280 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:281:9 [INFO] [stdout] | [INFO] [stdout] 281 | try!(self.writer.write(seq)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:282:9 [INFO] [stdout] | [INFO] [stdout] 282 | try!(self.writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:277:13 [INFO] [stdout] | [INFO] [stdout] 277 | try!(self.writer.write(b" ")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:278:13 [INFO] [stdout] | [INFO] [stdout] 278 | try!(self.writer.write(desc.unwrap().as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> vendor/rust-bio/src/io/bed.rs:116:10 [INFO] [stdout] | [INFO] [stdout] 116 | #[derive(RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stdout] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stdout] ... | [INFO] [stdout] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 43 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stdout] | [INFO] [stdout] 8 | / lazy_static! { [INFO] [stdout] 9 | | [INFO] [stdout] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stdout] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stdout] ... | [INFO] [stdout] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stdout] 42 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:124:26 [INFO] [stdout] | [INFO] [stdout] 124 | self.header[1..].trim_right().splitn(2, ' ').next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:129:26 [INFO] [stdout] | [INFO] [stdout] 129 | self.header[1..].trim_right().splitn(2, ' ').skip(1).next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:134:18 [INFO] [stdout] | [INFO] [stdout] 134 | self.seq.trim_right().as_bytes() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fastq.rs:139:19 [INFO] [stdout] | [INFO] [stdout] 139 | self.qual.trim_right().as_bytes() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:73:44 [INFO] [stdout] | [INFO] [stdout] 73 | record.seq.push_str(&self.line.trim_right()); [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:333:21 [INFO] [stdout] | [INFO] [stdout] 333 | self.header.trim_right().splitn(2, ' ').next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stdout] --> vendor/rust-bio/src/io/fasta.rs:338:21 [INFO] [stdout] | [INFO] [stdout] 338 | self.header.trim_right().splitn(2, ' ').skip(1).next() [INFO] [stdout] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> vendor/rust-bio/src/alphabets/dna.rs:54:17 [INFO] [stdout] | [INFO] [stdout] 54 | for (v, mut a) in comp.iter_mut().enumerate() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> vendor/rust-bio/src/data_structures/qgram_index.rs:71:13 [INFO] [stdout] | [INFO] [stdout] 71 | for mut a in address.iter_mut().skip(1) { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> vendor/rust-bio/src/alignment/pairwise.rs:227:25 [INFO] [stdout] | [INFO] [stdout] 227 | let mut s = &mut self.S[k]; [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 64 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:49:5 [INFO] [stdout] | [INFO] [stdout] 49 | try!(reader.records().next().unwrap()); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:48:18 [INFO] [stdout] | [INFO] [stdout] 48 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:52:18 [INFO] [stdout] | [INFO] [stdout] 52 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:53:23 [INFO] [stdout] | [INFO] [stdout] 53 | let output_file = try!(File::create(Path::new(results_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:56:18 [INFO] [stdout] | [INFO] [stdout] 56 | let filter = try!(from_file::(index_path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:158:5 [INFO] [stdout] | [INFO] [stdout] 158 | try!(writer.write(result_line.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/builder.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | try!(write_to_file(&index, index_path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/builder.rs:20:21 [INFO] [stdout] | [INFO] [stdout] 20 | let taxon_map = try!(parse_fasta_db(records)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:32:37 [INFO] [stdout] | [INFO] [stdout] 32 | let mut writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:42:30 [INFO] [stdout] | [INFO] [stdout] 42 | bytes_written += try!(writer.write(b">")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:43:30 [INFO] [stdout] | [INFO] [stdout] 43 | bytes_written += try!(writer.write(gi_str.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:44:30 [INFO] [stdout] | [INFO] [stdout] 44 | bytes_written += try!(writer.write(b"-")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:45:30 [INFO] [stdout] | [INFO] [stdout] 45 | bytes_written += try!(writer.write(tid_str.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:46:30 [INFO] [stdout] | [INFO] [stdout] 46 | bytes_written += try!(writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:47:30 [INFO] [stdout] | [INFO] [stdout] 47 | bytes_written += try!(writer.write(&sequence)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:48:30 [INFO] [stdout] | [INFO] [stdout] 48 | bytes_written += try!(writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:57:41 [INFO] [stdout] | [INFO] [stdout] 57 | writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/collapse.rs:19:34 [INFO] [stdout] | [INFO] [stdout] 19 | let (readid, hits) = try!(res); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/collapse.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | try!(write_single_line(header, hits, write_to)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:22:61 [INFO] [stdout] | [INFO] [stdout] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:22:77 [INFO] [stdout] | [INFO] [stdout] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:26:61 [INFO] [stdout] | [INFO] [stdout] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:26:77 [INFO] [stdout] | [INFO] [stdout] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:31:68 [INFO] [stdout] | [INFO] [stdout] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:31:84 [INFO] [stdout] | [INFO] [stdout] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:42:31 [INFO] [stdout] | [INFO] [stdout] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:42:47 [INFO] [stdout] | [INFO] [stdout] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:21:13 [INFO] [stdout] | [INFO] [stdout] 21 | let f = try!(File::open(Path::new(p))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 23 | Ok(try!(decode_from(&mut reader, SizeLimit::Infinite))) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:31:13 [INFO] [stdout] | [INFO] [stdout] 31 | let f = try!(File::create(Path::new(p))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:33:8 [INFO] [stdout] | [INFO] [stdout] 33 | Ok(try!(encode_into(t, &mut writer, SizeLimit::Infinite))) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:44:22 [INFO] [stdout] | [INFO] [stdout] 44 | let record = try!(record); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:46:28 [INFO] [stdout] | [INFO] [stdout] 46 | let (gi, tax_id) = try!(parse_read_header(record.header())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:18:37 [INFO] [stdout] | [INFO] [stdout] 18 | let mut writer = BufWriter::new(try!(File::create(&config.outfile))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:23:26 [INFO] [stdout] | [INFO] [stdout] 23 | readers.push((i, try!(Reader::from_file(path)))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:67:9 [INFO] [stdout] | [INFO] [stdout] 67 | try!(write!(&mut writer, ">R{}", num + 1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:71:9 [INFO] [stdout] | [INFO] [stdout] 71 | try!(write!(&mut writer, "\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:73:9 [INFO] [stdout] | [INFO] [stdout] 73 | try!(writer.write_all(&mut read)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:74:9 [INFO] [stdout] | [INFO] [stdout] 74 | try!(write!(&mut writer, "\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:69:13 [INFO] [stdout] | [INFO] [stdout] 69 | try!(write!(&mut writer, "_{}", c)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:16:32 [INFO] [stdout] | [INFO] [stdout] 16 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:38:32 [INFO] [stdout] | [INFO] [stdout] 38 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:49:32 [INFO] [stdout] | [INFO] [stdout] 49 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:74:32 [INFO] [stdout] | [INFO] [stdout] 74 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:87:15 [INFO] [stdout] | [INFO] [stdout] 87 | let rdr = try!(Reader::from_file(p)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:94:22 [INFO] [stdout] | [INFO] [stdout] 94 | let record = try!(record); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:104:11 [INFO] [stdout] | [INFO] [stdout] 104 | 67...255 => QualityEncoding::Illumina15, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(ellipsis_inclusive_range_patterns)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:105:11 [INFO] [stdout] | [INFO] [stdout] 105 | 64...66 => QualityEncoding::Illumina13, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:106:11 [INFO] [stdout] | [INFO] [stdout] 106 | 59...63 => QualityEncoding::Solexa, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:123:5 [INFO] [stdout] | [INFO] [stdout] 123 | try!(rdr.read_to_string(&mut buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:119:13 [INFO] [stdout] | [INFO] [stdout] 119 | let f = try!(File::open(f)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:196:28 [INFO] [stdout] | [INFO] [stdout] 196 | let adapters = try!(read_adapters(&Path::new(f), tolerance)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:212:18 [INFO] [stdout] | [INFO] [stdout] 212 | let md = try!(read_fastq_metadata(&p)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:314:19 [INFO] [stdout] | [INFO] [stdout] 314 | let mut rdr = try!(fastq::Reader::from_file(Path::new(&s)) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:65:10 [INFO] [stdout] | [INFO] [stdout] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:65:26 [INFO] [stdout] | [INFO] [stdout] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:72:10 [INFO] [stdout] | [INFO] [stdout] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:72:26 [INFO] [stdout] | [INFO] [stdout] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:394:23 [INFO] [stdout] | [INFO] [stdout] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:394:39 [INFO] [stdout] | [INFO] [stdout] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:401:45 [INFO] [stdout] | [INFO] [stdout] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:401:61 [INFO] [stdout] | [INFO] [stdout] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tax_tree.rs:296:33 [INFO] [stdout] | [INFO] [stdout] 296 | let (children, ranks) = try!(Self::tokenize_nodes(node_dump)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tax_tree.rs:361:24 [INFO] [stdout] | [INFO] [stdout] 361 | let line = try!(line); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/io.rs:64:13 [INFO] [stdout] | [INFO] [stdout] 64 | -> Box)>> + 'a> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 64 - -> Box)>> + 'a> { [INFO] [stdout] 64 + -> Box)>> + 'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/tax_tree.rs:82:39 [INFO] [stdout] | [INFO] [stdout] 82 | all_hits: Box)>>>, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 82 - all_hits: Box)>>>, [INFO] [stdout] 82 + all_hits: Box)>>>, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 66 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling uuid v0.1.18 [INFO] [stderr] Compiling quickcheck v0.3.2 [INFO] [stderr] Compiling mktemp v0.2.1 [INFO] [stderr] Compiling mtsv v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:80:36 [INFO] [stdout] | [INFO] [stdout] 80 | let mut archive = Archive::new(try!(GzDecoder::new(io::BufReader::new(try!(File::open(p)))))); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:80:75 [INFO] [stdout] | [INFO] [stdout] 80 | let mut archive = Archive::new(try!(GzDecoder::new(io::BufReader::new(try!(File::open(p)))))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:82:18 [INFO] [stdout] | [INFO] [stdout] 82 | for entry in try!(archive.entries()) { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:86:9 [INFO] [stdout] | [INFO] [stdout] 86 | try!(entry.read_to_end(&mut bytes)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:83:25 [INFO] [stdout] | [INFO] [stdout] 83 | let mut entry = try!(entry); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bin/mtsv-tree-build.rs:88:20 [INFO] [stdout] | [INFO] [stdout] 88 | let path = try!(entry.path()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:49:5 [INFO] [stdout] | [INFO] [stdout] 49 | try!(reader.records().next().unwrap()); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:48:18 [INFO] [stdout] | [INFO] [stdout] 48 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:52:18 [INFO] [stdout] | [INFO] [stdout] 52 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:53:23 [INFO] [stdout] | [INFO] [stdout] 53 | let output_file = try!(File::create(Path::new(results_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:56:18 [INFO] [stdout] | [INFO] [stdout] 56 | let filter = try!(from_file::(index_path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/binner.rs:158:5 [INFO] [stdout] | [INFO] [stdout] 158 | try!(writer.write(result_line.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/builder.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | try!(write_to_file(&index, index_path)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/builder.rs:20:21 [INFO] [stdout] | [INFO] [stdout] 20 | let taxon_map = try!(parse_fasta_db(records)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:32:37 [INFO] [stdout] | [INFO] [stdout] 32 | let mut writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:42:30 [INFO] [stdout] | [INFO] [stdout] 42 | bytes_written += try!(writer.write(b">")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:43:30 [INFO] [stdout] | [INFO] [stdout] 43 | bytes_written += try!(writer.write(gi_str.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:44:30 [INFO] [stdout] | [INFO] [stdout] 44 | bytes_written += try!(writer.write(b"-")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:45:30 [INFO] [stdout] | [INFO] [stdout] 45 | bytes_written += try!(writer.write(tid_str.as_bytes())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:46:30 [INFO] [stdout] | [INFO] [stdout] 46 | bytes_written += try!(writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:47:30 [INFO] [stdout] | [INFO] [stdout] 47 | bytes_written += try!(writer.write(&sequence)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:48:30 [INFO] [stdout] | [INFO] [stdout] 48 | bytes_written += try!(writer.write(b"\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/chunk.rs:57:41 [INFO] [stdout] | [INFO] [stdout] 57 | writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/collapse.rs:19:34 [INFO] [stdout] | [INFO] [stdout] 19 | let (readid, hits) = try!(res); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/collapse.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | try!(write_single_line(header, hits, write_to)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:22:61 [INFO] [stdout] | [INFO] [stdout] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:22:77 [INFO] [stdout] | [INFO] [stdout] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:26:61 [INFO] [stdout] | [INFO] [stdout] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:26:77 [INFO] [stdout] | [INFO] [stdout] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:31:68 [INFO] [stdout] | [INFO] [stdout] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:31:84 [INFO] [stdout] | [INFO] [stdout] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:42:31 [INFO] [stdout] | [INFO] [stdout] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/index.rs:42:47 [INFO] [stdout] | [INFO] [stdout] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:21:13 [INFO] [stdout] | [INFO] [stdout] 21 | let f = try!(File::open(Path::new(p))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 23 | Ok(try!(decode_from(&mut reader, SizeLimit::Infinite))) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:31:13 [INFO] [stdout] | [INFO] [stdout] 31 | let f = try!(File::create(Path::new(p))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:33:8 [INFO] [stdout] | [INFO] [stdout] 33 | Ok(try!(encode_into(t, &mut writer, SizeLimit::Infinite))) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:44:22 [INFO] [stdout] | [INFO] [stdout] 44 | let record = try!(record); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/io.rs:46:28 [INFO] [stdout] | [INFO] [stdout] 46 | let (gi, tax_id) = try!(parse_read_header(record.header())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:18:37 [INFO] [stdout] | [INFO] [stdout] 18 | let mut writer = BufWriter::new(try!(File::create(&config.outfile))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:23:26 [INFO] [stdout] | [INFO] [stdout] 23 | readers.push((i, try!(Reader::from_file(path)))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:67:9 [INFO] [stdout] | [INFO] [stdout] 67 | try!(write!(&mut writer, ">R{}", num + 1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:71:9 [INFO] [stdout] | [INFO] [stdout] 71 | try!(write!(&mut writer, "\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:73:9 [INFO] [stdout] | [INFO] [stdout] 73 | try!(writer.write_all(&mut read)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:74:9 [INFO] [stdout] | [INFO] [stdout] 74 | try!(write!(&mut writer, "\n")); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:69:13 [INFO] [stdout] | [INFO] [stdout] 69 | try!(write!(&mut writer, "_{}", c)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:329:9 [INFO] [stdout] | [INFO] [stdout] 329 | try!(f.read_to_end(&mut buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `File` is imported redundantly [INFO] [stdout] --> src/prep.rs:324:13 [INFO] [stdout] | [INFO] [stdout] 245 | use super::*; [INFO] [stdout] | -------- the item `File` is already imported here [INFO] [stdout] ... [INFO] [stdout] 324 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep.rs:327:21 [INFO] [stdout] | [INFO] [stdout] 327 | let mut f = try!(File::open(p)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:16:32 [INFO] [stdout] | [INFO] [stdout] 16 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:38:32 [INFO] [stdout] | [INFO] [stdout] 38 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:49:32 [INFO] [stdout] | [INFO] [stdout] 49 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/prep_config.rs:74:32 [INFO] [stdout] | [INFO] [stdout] 74 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:87:15 [INFO] [stdout] | [INFO] [stdout] 87 | let rdr = try!(Reader::from_file(p)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:94:22 [INFO] [stdout] | [INFO] [stdout] 94 | let record = try!(record); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:104:11 [INFO] [stdout] | [INFO] [stdout] 104 | 67...255 => QualityEncoding::Illumina15, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(ellipsis_inclusive_range_patterns)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:105:11 [INFO] [stdout] | [INFO] [stdout] 105 | 64...66 => QualityEncoding::Illumina13, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/prep_config.rs:106:11 [INFO] [stdout] | [INFO] [stdout] 106 | 59...63 => QualityEncoding::Solexa, [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:123:5 [INFO] [stdout] | [INFO] [stdout] 123 | try!(rdr.read_to_string(&mut buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:119:13 [INFO] [stdout] | [INFO] [stdout] 119 | let f = try!(File::open(f)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:196:28 [INFO] [stdout] | [INFO] [stdout] 196 | let adapters = try!(read_adapters(&Path::new(f), tolerance)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:212:18 [INFO] [stdout] | [INFO] [stdout] 212 | let md = try!(read_fastq_metadata(&p)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/prep_config.rs:314:19 [INFO] [stdout] | [INFO] [stdout] 314 | let mut rdr = try!(fastq::Reader::from_file(Path::new(&s)) [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:65:10 [INFO] [stdout] | [INFO] [stdout] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:65:26 [INFO] [stdout] | [INFO] [stdout] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:72:10 [INFO] [stdout] | [INFO] [stdout] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:72:26 [INFO] [stdout] | [INFO] [stdout] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:394:23 [INFO] [stdout] | [INFO] [stdout] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:394:39 [INFO] [stdout] | [INFO] [stdout] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:401:45 [INFO] [stdout] | [INFO] [stdout] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/tax_tree.rs:401:61 [INFO] [stdout] | [INFO] [stdout] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tax_tree.rs:296:33 [INFO] [stdout] | [INFO] [stdout] 296 | let (children, ranks) = try!(Self::tokenize_nodes(node_dump)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tax_tree.rs:361:24 [INFO] [stdout] | [INFO] [stdout] 361 | let line = try!(line); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/io.rs:64:13 [INFO] [stdout] | [INFO] [stdout] 64 | -> Box)>> + 'a> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 64 - -> Box)>> + 'a> { [INFO] [stdout] 64 + -> Box)>> + 'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/tax_tree.rs:82:39 [INFO] [stdout] | [INFO] [stdout] 82 | all_hits: Box)>>>, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 82 - all_hits: Box)>>>, [INFO] [stdout] 82 + all_hits: Box)>>>, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 69 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.98s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/mtsv-de5ae258e4868b20) [INFO] [stderr] Executable unittests src/bin/mtsv-binner.rs (/opt/rustwide/target/debug/deps/mtsv_binner-09bfcde4a3894437) [INFO] [stderr] Executable unittests src/bin/mtsv-build.rs (/opt/rustwide/target/debug/deps/mtsv_build-7bb6b541d5d25164) [INFO] [stderr] Executable unittests src/bin/mtsv-chunk.rs (/opt/rustwide/target/debug/deps/mtsv_chunk-8e8a797b9576637b) [INFO] [stderr] Executable unittests src/bin/mtsv-collapse.rs (/opt/rustwide/target/debug/deps/mtsv_collapse-6c4a705088f924c3) [INFO] [stderr] Executable unittests src/bin/mtsv-readprep.rs (/opt/rustwide/target/debug/deps/mtsv_readprep-6d61e360c363c4f5) [INFO] [stderr] Executable unittests src/bin/mtsv-signature.rs (/opt/rustwide/target/debug/deps/mtsv_signature-d90fcbe537a4b573) [INFO] [stderr] Executable unittests src/bin/mtsv-tree-build.rs (/opt/rustwide/target/debug/deps/mtsv_tree_build-f864614229d49d5c) [INFO] running `Command { std: "docker" "inspect" "44f7c8a4eb50d627ccfd53f2c7882c94da00733cbd5e61e74d016c21521b4a49", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "44f7c8a4eb50d627ccfd53f2c7882c94da00733cbd5e61e74d016c21521b4a49", kill_on_drop: false }` [INFO] [stdout] 44f7c8a4eb50d627ccfd53f2c7882c94da00733cbd5e61e74d016c21521b4a49 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] eb217fe17c5c554524b827b2e050d3d0e901e48ecf37f3e3d81a2a6ef22ed7b2 [INFO] running `Command { std: "docker" "start" "-a" "eb217fe17c5c554524b827b2e050d3d0e901e48ecf37f3e3d81a2a6ef22ed7b2", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/lib.rs:64:30 [INFO] [stderr] | [INFO] [stderr] 64 | #[derive(Copy, Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/lib.rs:64:46 [INFO] [stderr] | [INFO] [stderr] 64 | #[derive(Copy, Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:71:68 [INFO] [stderr] | [INFO] [stderr] 71 | #[derive(Copy, Clone, Debug, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:71:84 [INFO] [stderr] | [INFO] [stderr] 71 | #[derive(Copy, Clone, Debug, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:109:61 [INFO] [stderr] | [INFO] [stderr] 109 | #[derive(Copy, Clone, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:109:77 [INFO] [stderr] | [INFO] [stderr] 109 | #[derive(Copy, Clone, PartialEq, PartialOrd, Eq, Ord, Hash, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:153:24 [INFO] [stderr] | [INFO] [stderr] 153 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:153:40 [INFO] [stderr] | [INFO] [stderr] 153 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:171:24 [INFO] [stderr] | [INFO] [stderr] 171 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:171:40 [INFO] [stderr] | [INFO] [stderr] 171 | #[derive(Debug, Clone, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:275:10 [INFO] [stderr] | [INFO] [stderr] 275 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/petgraph/src/graph.rs:275:26 [INFO] [stderr] | [INFO] [stderr] 275 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:140:9 [INFO] [stderr] | [INFO] [stderr] 140 | try!(write!(f, "EdgeIndex(")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:142:13 [INFO] [stderr] | [INFO] [stderr] 142 | try!(write!(f, "End")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:144:13 [INFO] [stderr] | [INFO] [stderr] 144 | try!(write!(f, "{}", self.index())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:307:9 [INFO] [stderr] | [INFO] [stderr] 307 | try!(write!(f, "Graph<{}> {{", etype)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:311:9 [INFO] [stderr] | [INFO] [stderr] 311 | try!(writeln!(f, "")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:322:9 [INFO] [stderr] | [INFO] [stderr] 322 | try!(write!(f, "}}")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:313:13 [INFO] [stderr] | [INFO] [stderr] 313 | try!(writeln!(f, "{}{}: Node({:?}),", indent, index, n.weight)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/graph.rs:316:13 [INFO] [stderr] | [INFO] [stderr] 316 | try!(writeln!(f, "{}{}: Edge(from={}, to={}, weight={:?}),", [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:66:9 [INFO] [stderr] | [INFO] [stderr] 66 | try!(writeln!(f, "{} {{", TYPE[g.is_directed() as usize])); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:98:9 [INFO] [stderr] | [INFO] [stderr] 98 | try!(writeln!(f, "}}")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:70:13 [INFO] [stderr] | [INFO] [stderr] 70 | try!(write!(f, "{}{}", INDENT, index.index())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:72:17 [INFO] [stderr] | [INFO] [stderr] 72 | try!(writeln!(f, "")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:74:17 [INFO] [stderr] | [INFO] [stderr] 74 | try!(write!(f, " [label=\"")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:75:17 [INFO] [stderr] | [INFO] [stderr] 75 | try!(node_fmt(&g[index], &mut |d| Escaped(d).fmt(f))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:76:17 [INFO] [stderr] | [INFO] [stderr] 76 | try!(writeln!(f, "\"]")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:82:13 [INFO] [stderr] | [INFO] [stderr] 82 | try!(write!(f, "{}{} {} {}", [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:88:17 [INFO] [stderr] | [INFO] [stderr] 88 | try!(writeln!(f, "")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:90:17 [INFO] [stderr] | [INFO] [stderr] 90 | try!(writeln!(f, " [label=\"{}\"]", i)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:92:17 [INFO] [stderr] | [INFO] [stderr] 92 | try!(write!(f, " [label=\"")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:93:17 [INFO] [stderr] | [INFO] [stderr] 93 | try!(edge_fmt(&edge.weight, &mut |d| Escaped(d).fmt(f))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:94:17 [INFO] [stderr] | [INFO] [stderr] 94 | try!(writeln!(f, "\"]")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:136:9 [INFO] [stderr] | [INFO] [stderr] 136 | try!(writeln!(f, "{} {{", TYPE[0])); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:170:9 [INFO] [stderr] | [INFO] [stderr] 170 | try!(writeln!(f, "}}")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:143:13 [INFO] [stderr] | [INFO] [stderr] 143 | try!(write!(f, "{}{}", INDENT, i)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:145:17 [INFO] [stderr] | [INFO] [stderr] 145 | try!(writeln!(f, "")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:147:17 [INFO] [stderr] | [INFO] [stderr] 147 | try!(write!(f, " [label=\"")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:148:17 [INFO] [stderr] | [INFO] [stderr] 148 | try!(node_fmt(&node, &mut |d| Escaped(d).fmt(f))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:149:17 [INFO] [stderr] | [INFO] [stderr] 149 | try!(writeln!(f, "\"]")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:154:13 [INFO] [stderr] | [INFO] [stderr] 154 | try!(write!(f, "{}{} {} {}", [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:160:17 [INFO] [stderr] | [INFO] [stderr] 160 | try!(writeln!(f, "")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:162:17 [INFO] [stderr] | [INFO] [stderr] 162 | try!(writeln!(f, " [label=\"{}\"]", i)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:164:17 [INFO] [stderr] | [INFO] [stderr] 164 | try!(write!(f, " [label=\"")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:165:17 [INFO] [stderr] | [INFO] [stderr] 165 | try!(edge_fmt(&edge_weight, &mut |d| Escaped(d).fmt(f))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:166:17 [INFO] [stderr] | [INFO] [stderr] 166 | try!(writeln!(f, "\"]")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:202:13 [INFO] [stderr] | [INFO] [stderr] 202 | try!(self.write_char(c)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/petgraph/src/dot.rs:209:20 [INFO] [stderr] | [INFO] [stderr] 209 | '"' => try!(self.0.write_char('\\')), [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stderr] --> vendor/petgraph/src/visit.rs:181:25 [INFO] [stderr] | [INFO] [stderr] 181 | fn visit(&mut self, N) -> bool; [INFO] [stderr] | ^ help: try naming the parameter or explicitly ignoring it: `_: N` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(anonymous_parameters)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stderr] = note: for more information, see issue #41686 [INFO] [stderr] [INFO] [stderr] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stderr] --> vendor/petgraph/src/visit.rs:182:26 [INFO] [stderr] | [INFO] [stderr] 182 | fn is_visited(&self, &N) -> bool; [INFO] [stderr] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &N` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stderr] = note: for more information, see issue #41686 [INFO] [stderr] [INFO] [stderr] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stderr] --> vendor/petgraph/src/visit.rs:228:25 [INFO] [stderr] | [INFO] [stderr] 228 | fn reset_map(&self, &mut Self::Map); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: try naming the parameter or explicitly ignoring it: `_: &mut Self::Map` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stderr] = note: for more information, see issue #41686 [INFO] [stderr] [INFO] [stderr] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stderr] --> vendor/petgraph/src/isomorphism.rs:205:22 [INFO] [stderr] | [INFO] [stderr] 205 | fn eq(&mut self, &T, &T) -> bool; [INFO] [stderr] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &T` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stderr] = note: for more information, see issue #41686 [INFO] [stderr] [INFO] [stderr] warning: anonymous parameters are deprecated and will be removed in the next edition [INFO] [stderr] --> vendor/petgraph/src/isomorphism.rs:205:26 [INFO] [stderr] | [INFO] [stderr] 205 | fn eq(&mut self, &T, &T) -> bool; [INFO] [stderr] | ^^ help: try naming the parameter or explicitly ignoring it: `_: &T` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2018! [INFO] [stderr] = note: for more information, see issue #41686 [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:62:33 [INFO] [stderr] | [INFO] [stderr] 62 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 62 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 62 + where F: FnMut(&N, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:62:40 [INFO] [stderr] | [INFO] [stderr] 62 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 62 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 62 + where F: FnMut(&N, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:63:33 [INFO] [stderr] | [INFO] [stderr] 63 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 63 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 63 + G: FnMut(&E, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:63:40 [INFO] [stderr] | [INFO] [stderr] 63 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 63 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 63 + G: FnMut(&E, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:132:33 [INFO] [stderr] | [INFO] [stderr] 132 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 132 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 132 + where F: FnMut(&N, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:132:40 [INFO] [stderr] | [INFO] [stderr] 132 | where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 132 - where F: FnMut(&N, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 132 + where F: FnMut(&N, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:133:33 [INFO] [stderr] | [INFO] [stderr] 133 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 133 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 133 + G: FnMut(&E, &mut dyn FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> vendor/petgraph/src/dot.rs:133:40 [INFO] [stderr] | [INFO] [stderr] 133 | G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 133 - G: FnMut(&E, &mut FnMut(&Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] 133 + G: FnMut(&E, &mut FnMut(&dyn Display) -> fmt::Result) -> fmt::Result, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `petgraph` (lib) generated 61 warnings [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/daggy/src/lib.rs:63:24 [INFO] [stderr] | [INFO] [stderr] 63 | #[derive(Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/daggy/src/lib.rs:63:40 [INFO] [stderr] | [INFO] [stderr] 63 | #[derive(Clone, Debug, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `daggy` (lib) generated 2 warnings [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/rust-bio/src/data_structures/bwt.rs:81:38 [INFO] [stderr] | [INFO] [stderr] 81 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/rust-bio/src/data_structures/bwt.rs:81:54 [INFO] [stderr] | [INFO] [stderr] 81 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/rust-bio/src/data_structures/fmindex.rs:16:38 [INFO] [stderr] | [INFO] [stderr] 16 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/rust-bio/src/data_structures/fmindex.rs:16:54 [INFO] [stderr] | [INFO] [stderr] 16 | #[derive(Debug, Eq, Hash, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:54:9 [INFO] [stderr] | [INFO] [stderr] 54 | try!(self.reader.read_line(&mut record.header)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:60:13 [INFO] [stderr] | [INFO] [stderr] 60 | try!(self.reader.read_line(&mut record.seq)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:61:13 [INFO] [stderr] | [INFO] [stderr] 61 | try!(self.reader.read_line(&mut self.sep_line)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:62:13 [INFO] [stderr] | [INFO] [stderr] 62 | try!(self.reader.read_line(&mut record.qual)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:213:9 [INFO] [stderr] | [INFO] [stderr] 213 | try!(self.writer.write(b"@")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:214:9 [INFO] [stderr] | [INFO] [stderr] 214 | try!(self.writer.write(id.as_bytes())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:219:9 [INFO] [stderr] | [INFO] [stderr] 219 | try!(self.writer.write(b"\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:220:9 [INFO] [stderr] | [INFO] [stderr] 220 | try!(self.writer.write(seq)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:221:9 [INFO] [stderr] | [INFO] [stderr] 221 | try!(self.writer.write(b"\n+\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:222:9 [INFO] [stderr] | [INFO] [stderr] 222 | try!(self.writer.write(qual)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:223:9 [INFO] [stderr] | [INFO] [stderr] 223 | try!(self.writer.write(b"\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:216:13 [INFO] [stderr] | [INFO] [stderr] 216 | try!(self.writer.write(b" ")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:217:13 [INFO] [stderr] | [INFO] [stderr] 217 | try!(self.writer.write(desc.unwrap().as_bytes())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:231:10 [INFO] [stderr] | [INFO] [stderr] 231 | #[derive(RustcDecodable, Debug, Copy, Clone)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:57:13 [INFO] [stderr] | [INFO] [stderr] 57 | try!(self.reader.read_line(&mut self.line)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:69:13 [INFO] [stderr] | [INFO] [stderr] 69 | try!(self.reader.read_line(&mut self.line)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:100:57 [INFO] [stderr] | [INFO] [stderr] 100 | let (name, record): (String, IndexRecord) = try!(row); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:152:21 [INFO] [stderr] | [INFO] [stderr] 152 | let index = try!(Index::with_fasta_file(path)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:165:21 [INFO] [stderr] | [INFO] [stderr] 165 | let index = try!(Index::new(fai)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:211:17 [INFO] [stderr] | [INFO] [stderr] 211 | try!(self.reader.seek(io::SeekFrom::Start(offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:220:17 [INFO] [stderr] | [INFO] [stderr] 220 | try!(self.reader.read(&mut buf[..line_stop as usize])); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:215:21 [INFO] [stderr] | [INFO] [stderr] 215 | try!(self.reader.read(&mut buf)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:274:9 [INFO] [stderr] | [INFO] [stderr] 274 | try!(self.writer.write(b">")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:275:9 [INFO] [stderr] | [INFO] [stderr] 275 | try!(self.writer.write(id.as_bytes())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:280:9 [INFO] [stderr] | [INFO] [stderr] 280 | try!(self.writer.write(b"\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:281:9 [INFO] [stderr] | [INFO] [stderr] 281 | try!(self.writer.write(seq)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:282:9 [INFO] [stderr] | [INFO] [stderr] 282 | try!(self.writer.write(b"\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:277:13 [INFO] [stderr] | [INFO] [stderr] 277 | try!(self.writer.write(b" ")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:278:13 [INFO] [stderr] | [INFO] [stderr] 278 | try!(self.writer.write(desc.unwrap().as_bytes())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> vendor/rust-bio/src/io/bed.rs:116:10 [INFO] [stderr] | [INFO] [stderr] 116 | #[derive(RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> vendor/rust-bio/src/scores/blosum62.rs:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | / lazy_static! { [INFO] [stderr] 9 | | [INFO] [stderr] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L327 [INFO] [stderr] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stderr] ... | [INFO] [stderr] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stderr] 42 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> vendor/rust-bio/src/scores/pam40.rs:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | / lazy_static! { [INFO] [stderr] 9 | | [INFO] [stderr] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stderr] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stderr] ... | [INFO] [stderr] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stderr] 42 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> vendor/rust-bio/src/scores/pam120.rs:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | / lazy_static! { [INFO] [stderr] 9 | | [INFO] [stderr] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L614 [INFO] [stderr] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stderr] ... | [INFO] [stderr] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stderr] 42 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> vendor/rust-bio/src/scores/pam200.rs:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | / lazy_static! { [INFO] [stderr] 9 | | [INFO] [stderr] 10 | | // Taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L710 [INFO] [stderr] 11 | | // Copyright (c) 2006-2015, Knut Reinert, FU Berlin [INFO] [stderr] ... | [INFO] [stderr] 42 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stderr] 43 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> vendor/rust-bio/src/scores/pam250.rs:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | / lazy_static! { [INFO] [stderr] 9 | | [INFO] [stderr] 10 | | // taken from https://github.com/seqan/seqan/blob/master/include%2Fseqan%2Fscore%2Fscore_matrix_data.h#L806 [INFO] [stderr] 11 | | static ref ARRAY: [i32;729]=[ [INFO] [stderr] ... | [INFO] [stderr] 41 | | static ref MAT: DMat = DMat::from_col_vec(27, 27, &*ARRAY); [INFO] [stderr] 42 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:124:26 [INFO] [stderr] | [INFO] [stderr] 124 | self.header[1..].trim_right().splitn(2, ' ').next() [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:129:26 [INFO] [stderr] | [INFO] [stderr] 129 | self.header[1..].trim_right().splitn(2, ' ').skip(1).next() [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:134:18 [INFO] [stderr] | [INFO] [stderr] 134 | self.seq.trim_right().as_bytes() [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stderr] --> vendor/rust-bio/src/io/fastq.rs:139:19 [INFO] [stderr] | [INFO] [stderr] 139 | self.qual.trim_right().as_bytes() [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:73:44 [INFO] [stderr] | [INFO] [stderr] 73 | record.seq.push_str(&self.line.trim_right()); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:333:21 [INFO] [stderr] | [INFO] [stderr] 333 | self.header.trim_right().splitn(2, ' ').next() [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `core::str::::trim_right`: superseded by `trim_end` [INFO] [stderr] --> vendor/rust-bio/src/io/fasta.rs:338:21 [INFO] [stderr] | [INFO] [stderr] 338 | self.header.trim_right().splitn(2, ' ').skip(1).next() [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> vendor/rust-bio/src/alphabets/dna.rs:54:17 [INFO] [stderr] | [INFO] [stderr] 54 | for (v, mut a) in comp.iter_mut().enumerate() { [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> vendor/rust-bio/src/data_structures/qgram_index.rs:71:13 [INFO] [stderr] | [INFO] [stderr] 71 | for mut a in address.iter_mut().skip(1) { [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> vendor/rust-bio/src/alignment/pairwise.rs:227:25 [INFO] [stderr] | [INFO] [stderr] 227 | let mut s = &mut self.S[k]; [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: `bio` (lib) generated 64 warnings (15 duplicates) [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/binner.rs:49:5 [INFO] [stderr] | [INFO] [stderr] 49 | try!(reader.records().next().unwrap()); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/binner.rs:48:18 [INFO] [stderr] | [INFO] [stderr] 48 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/binner.rs:52:18 [INFO] [stderr] | [INFO] [stderr] 52 | let reader = try!(fasta::Reader::from_file(Path::new(fasta_path))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/binner.rs:53:23 [INFO] [stderr] | [INFO] [stderr] 53 | let output_file = try!(File::create(Path::new(results_path))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/binner.rs:56:18 [INFO] [stderr] | [INFO] [stderr] 56 | let filter = try!(from_file::(index_path)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/binner.rs:158:5 [INFO] [stderr] | [INFO] [stderr] 158 | try!(writer.write(result_line.as_bytes())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/builder.rs:26:5 [INFO] [stderr] | [INFO] [stderr] 26 | try!(write_to_file(&index, index_path)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/builder.rs:20:21 [INFO] [stderr] | [INFO] [stderr] 20 | let taxon_map = try!(parse_fasta_db(records)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:32:37 [INFO] [stderr] | [INFO] [stderr] 32 | let mut writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:42:30 [INFO] [stderr] | [INFO] [stderr] 42 | bytes_written += try!(writer.write(b">")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:43:30 [INFO] [stderr] | [INFO] [stderr] 43 | bytes_written += try!(writer.write(gi_str.as_bytes())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:44:30 [INFO] [stderr] | [INFO] [stderr] 44 | bytes_written += try!(writer.write(b"-")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:45:30 [INFO] [stderr] | [INFO] [stderr] 45 | bytes_written += try!(writer.write(tid_str.as_bytes())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:46:30 [INFO] [stderr] | [INFO] [stderr] 46 | bytes_written += try!(writer.write(b"\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:47:30 [INFO] [stderr] | [INFO] [stderr] 47 | bytes_written += try!(writer.write(&sequence)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:48:30 [INFO] [stderr] | [INFO] [stderr] 48 | bytes_written += try!(writer.write(b"\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/chunk.rs:57:41 [INFO] [stderr] | [INFO] [stderr] 57 | writer = BufWriter::new(try!(File::create(&chunk_path))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/collapse.rs:19:34 [INFO] [stderr] | [INFO] [stderr] 19 | let (readid, hits) = try!(res); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/collapse.rs:27:9 [INFO] [stderr] | [INFO] [stderr] 27 | try!(write_single_line(header, hits, write_to)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:22:61 [INFO] [stderr] | [INFO] [stderr] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:22:77 [INFO] [stderr] | [INFO] [stderr] 22 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:26:61 [INFO] [stderr] | [INFO] [stderr] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:26:77 [INFO] [stderr] | [INFO] [stderr] 26 | #[derive(Clone, Copy, Eq, PartialEq, PartialOrd, Ord, Hash, RustcEncodable, RustcDecodable, Debug)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:31:68 [INFO] [stderr] | [INFO] [stderr] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:31:84 [INFO] [stderr] | [INFO] [stderr] 31 | #[derive(Clone, Copy, Debug, Eq, Hash, PartialEq, PartialOrd, Ord, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:42:31 [INFO] [stderr] | [INFO] [stderr] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/index.rs:42:47 [INFO] [stderr] | [INFO] [stderr] 42 | #[derive(Eq, Hash, PartialEq, RustcEncodable, RustcDecodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/io.rs:21:13 [INFO] [stderr] | [INFO] [stderr] 21 | let f = try!(File::open(Path::new(p))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/io.rs:23:8 [INFO] [stderr] | [INFO] [stderr] 23 | Ok(try!(decode_from(&mut reader, SizeLimit::Infinite))) [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/io.rs:31:13 [INFO] [stderr] | [INFO] [stderr] 31 | let f = try!(File::create(Path::new(p))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/io.rs:33:8 [INFO] [stderr] | [INFO] [stderr] 33 | Ok(try!(encode_into(t, &mut writer, SizeLimit::Infinite))) [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/io.rs:44:22 [INFO] [stderr] | [INFO] [stderr] 44 | let record = try!(record); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/io.rs:46:28 [INFO] [stderr] | [INFO] [stderr] 46 | let (gi, tax_id) = try!(parse_read_header(record.header())); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:18:37 [INFO] [stderr] | [INFO] [stderr] 18 | let mut writer = BufWriter::new(try!(File::create(&config.outfile))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:23:26 [INFO] [stderr] | [INFO] [stderr] 23 | readers.push((i, try!(Reader::from_file(path)))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:67:9 [INFO] [stderr] | [INFO] [stderr] 67 | try!(write!(&mut writer, ">R{}", num + 1)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:71:9 [INFO] [stderr] | [INFO] [stderr] 71 | try!(write!(&mut writer, "\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:73:9 [INFO] [stderr] | [INFO] [stderr] 73 | try!(writer.write_all(&mut read)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:74:9 [INFO] [stderr] | [INFO] [stderr] 74 | try!(write!(&mut writer, "\n")); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:69:13 [INFO] [stderr] | [INFO] [stderr] 69 | try!(write!(&mut writer, "_{}", c)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/prep_config.rs:16:32 [INFO] [stderr] | [INFO] [stderr] 16 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/prep_config.rs:38:32 [INFO] [stderr] | [INFO] [stderr] 38 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/prep_config.rs:49:32 [INFO] [stderr] | [INFO] [stderr] 49 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/prep_config.rs:74:32 [INFO] [stderr] | [INFO] [stderr] 74 | #[derive(Debug, Eq, PartialEq, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep_config.rs:87:15 [INFO] [stderr] | [INFO] [stderr] 87 | let rdr = try!(Reader::from_file(p)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep_config.rs:94:22 [INFO] [stderr] | [INFO] [stderr] 94 | let record = try!(record); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: `...` range patterns are deprecated [INFO] [stderr] --> src/prep_config.rs:104:11 [INFO] [stderr] | [INFO] [stderr] 104 | 67...255 => QualityEncoding::Illumina15, [INFO] [stderr] | ^^^ help: use `..=` for an inclusive range [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(ellipsis_inclusive_range_patterns)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: `...` range patterns are deprecated [INFO] [stderr] --> src/prep_config.rs:105:11 [INFO] [stderr] | [INFO] [stderr] 105 | 64...66 => QualityEncoding::Illumina13, [INFO] [stderr] | ^^^ help: use `..=` for an inclusive range [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: `...` range patterns are deprecated [INFO] [stderr] --> src/prep_config.rs:106:11 [INFO] [stderr] | [INFO] [stderr] 106 | 59...63 => QualityEncoding::Solexa, [INFO] [stderr] | ^^^ help: use `..=` for an inclusive range [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep_config.rs:123:5 [INFO] [stderr] | [INFO] [stderr] 123 | try!(rdr.read_to_string(&mut buf)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep_config.rs:119:13 [INFO] [stderr] | [INFO] [stderr] 119 | let f = try!(File::open(f)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep_config.rs:196:28 [INFO] [stderr] | [INFO] [stderr] 196 | let adapters = try!(read_adapters(&Path::new(f), tolerance)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep_config.rs:212:18 [INFO] [stderr] | [INFO] [stderr] 212 | let md = try!(read_fastq_metadata(&p)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep_config.rs:314:19 [INFO] [stderr] | [INFO] [stderr] 314 | let mut rdr = try!(fastq::Reader::from_file(Path::new(&s)) [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:65:10 [INFO] [stderr] | [INFO] [stderr] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:65:26 [INFO] [stderr] | [INFO] [stderr] 65 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:72:10 [INFO] [stderr] | [INFO] [stderr] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:72:26 [INFO] [stderr] | [INFO] [stderr] 72 | #[derive(RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:394:23 [INFO] [stderr] | [INFO] [stderr] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:394:39 [INFO] [stderr] | [INFO] [stderr] 394 | #[derive(Copy, Clone, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:401:45 [INFO] [stderr] | [INFO] [stderr] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stderr] --> src/tax_tree.rs:401:61 [INFO] [stderr] | [INFO] [stderr] 401 | #[derive(Copy, Clone, Debug, Eq, PartialEq, RustcDecodable, RustcEncodable)] [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/tax_tree.rs:296:33 [INFO] [stderr] | [INFO] [stderr] 296 | let (children, ranks) = try!(Self::tokenize_nodes(node_dump)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/tax_tree.rs:361:24 [INFO] [stderr] | [INFO] [stderr] 361 | let line = try!(line); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/io.rs:64:13 [INFO] [stderr] | [INFO] [stderr] 64 | -> Box)>> + 'a> { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 64 - -> Box)>> + 'a> { [INFO] [stderr] 64 + -> Box)>> + 'a> { [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/tax_tree.rs:82:39 [INFO] [stderr] | [INFO] [stderr] 82 | all_hits: Box)>>>, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `dyn` [INFO] [stderr] | [INFO] [stderr] 82 - all_hits: Box)>>>, [INFO] [stderr] 82 + all_hits: Box)>>>, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `mtsv` (lib) generated 66 warnings [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/bin/mtsv-tree-build.rs:80:36 [INFO] [stderr] | [INFO] [stderr] 80 | let mut archive = Archive::new(try!(GzDecoder::new(io::BufReader::new(try!(File::open(p)))))); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/bin/mtsv-tree-build.rs:80:75 [INFO] [stderr] | [INFO] [stderr] 80 | let mut archive = Archive::new(try!(GzDecoder::new(io::BufReader::new(try!(File::open(p)))))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/bin/mtsv-tree-build.rs:82:18 [INFO] [stderr] | [INFO] [stderr] 82 | for entry in try!(archive.entries()) { [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/bin/mtsv-tree-build.rs:86:9 [INFO] [stderr] | [INFO] [stderr] 86 | try!(entry.read_to_end(&mut bytes)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/bin/mtsv-tree-build.rs:83:25 [INFO] [stderr] | [INFO] [stderr] 83 | let mut entry = try!(entry); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/bin/mtsv-tree-build.rs:88:20 [INFO] [stderr] | [INFO] [stderr] 88 | let path = try!(entry.path()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:329:9 [INFO] [stderr] | [INFO] [stderr] 329 | try!(f.read_to_end(&mut buf)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: the item `File` is imported redundantly [INFO] [stderr] --> src/prep.rs:324:13 [INFO] [stderr] | [INFO] [stderr] 245 | use super::*; [INFO] [stderr] | -------- the item `File` is already imported here [INFO] [stderr] ... [INFO] [stderr] 324 | use std::fs::File; [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/prep.rs:327:21 [INFO] [stderr] | [INFO] [stderr] 327 | let mut f = try!(File::open(p)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: `mtsv` (bin "mtsv-tree-build" test) generated 6 warnings [INFO] [stderr] warning: `mtsv` (lib test) generated 69 warnings (66 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mtsv-de5ae258e4868b20) [INFO] [stdout] [INFO] [stdout] running 71 tests [INFO] [stdout] test align::test::test_empty ... ok [INFO] [stdout] test align::test::test_begin_edits ... ok [INFO] [stdout] test align::test::test_end_edits ... ok [INFO] [stdout] test align::test::test_from_jupyter_notebook ... ok [INFO] [stdout] test align::test::test_nomatches ... ok [INFO] [stdout] test align::test::test_middle_edits ... ok [INFO] [stdout] test align::test::test_exact_partial ... ok [INFO] [stdout] test binner::test::success_empty ... ok [INFO] [stdout] test binner::test::success_single_spaces ... ok [INFO] [stdout] test binner::test::success_many ... ok [INFO] [stdout] test align::test::test_exact_full ... ok [INFO] [stdout] test collapse::test::simple_collapse ... ok [INFO] [stdout] test index::test::seed_hits_success ... ok [INFO] [stdout] test io::test::parsing_positive ... ok [INFO] [stdout] test io::test::roundtrip_single ... ok [INFO] [stdout] test prep::tests::adapters_empty ... ok [INFO] [stdout] test prep::tests::adapters_none ... ok [INFO] [stdout] test prep::tests::adapters_present_but_below_tolerance ... ok [INFO] [stdout] test prep::tests::adapters_present_and_above_tolerance ... ok [INFO] [stdout] test prep::tests::highest_at_end ... ok [INFO] [stdout] test prep::tests::adapters_whole_sequence ... ok [INFO] [stdout] test prep::tests::highest_at_start ... ok [INFO] [stdout] test prep::tests::highest_in_middle ... ok [INFO] [stdout] test prep::tests::highest_q_same_length ... ok [INFO] [stdout] test prep::tests::lcd_trim_same_length ... ok [INFO] [stdout] test prep::tests::lcd_trim_diff_length ... ok [INFO] [stdout] test prep::tests::lcdq_trim_diff_length ... ok [INFO] [stdout] test prep::tests::lcdq_trim_same_length ... ok [INFO] [stdout] test prep::tests::quality_filter ... ok [INFO] [stdout] test prep::tests::segment_trim_even_division ... ok [INFO] [stdout] test prep::tests::segment_trim_same_len ... ok [INFO] [stdout] test prep::tests::segment_trim_uneven_division ... ok [INFO] [stdout] test builder::test::success ... ok [INFO] [stdout] test prep_config::test::test_subadapters ... ok [INFO] [stdout] test tax_tree::test::tokenize_empty ... ok [INFO] [stdout] test tax_tree::test::tokenize ... ok [INFO] [stdout] test tax_tree::test::human_ancestors ... ok [INFO] [stdout] test tax_tree::test::human_siblings_rank ... ok [INFO] [stdout] test util::test::lines_for_the_line_throne ... ok [INFO] [stdout] test tax_tree::test::informative_parent ... ok [INFO] [stdout] test util::test::success ... ok [INFO] [stdout] test tax_tree::test::human_siblings_lca ... ok [INFO] [stdout] test builder::test::fail_empty_header - should panic ... ok [INFO] [stdout] test index::test::seed_hits_fail - should panic ... ok [INFO] [stdout] test io::test::invalid_ids - should panic ... ok [INFO] [stdout] test io::test::missing_ids - should panic ... ok [INFO] [stdout] test io::test::no_read_header - should panic ... ok [INFO] [stdout] test prep::tests::test_highest_q_longer_desired_than_avail - should panic ... ok [INFO] [stdout] test prep::tests::test_highest_q_zero_goal - should panic ... ok [INFO] [stdout] test tax_tree::test::tokenize_fail_rank_missing - should panic ... ok [INFO] [stdout] test tax_tree::test::tokenize_fail_parent_missing - should panic ... ok [INFO] [stdout] test tax_tree::test::tokenize_fail_parent_bad - should panic ... ok [INFO] [stdout] test tax_tree::test::tokenize_fail_taxid_missing - should panic ... ok [INFO] [stdout] test tax_tree::test::tokenize_fail_taxid_bad - should panic ... ok [INFO] [stdout] test util::test::fail_decimal_gi - should panic ... ok [INFO] [stdout] test util::test::fail_decimal_taxid - should panic ... ok [INFO] [stdout] test util::test::fail_empty_nodash - should panic ... ok [INFO] [stdout] test util::test::fail_extra - should panic ... ok [INFO] [stdout] test util::test::fail_non_numeric_gi - should panic ... ok [INFO] [stdout] test util::test::fail_empty - should panic ... ok [INFO] [stdout] test util::test::fail_non_numeric_taxid - should panic ... ok [INFO] [stdout] test index::test::reference_candidate_different_bin - should panic ... ok [INFO] [stdout] test index::test::reference_candidate_non_overlapping - should panic ... ok [INFO] [stdout] test io::test::io_helpers ... ok [INFO] [stdout] test prep_config::test::segment ... ok [INFO] [stdout] test prep_config::test::lcd ... ok [INFO] [stdout] test io::test::roundtrip_many ... ok [INFO] [stdout] test prep::tests::test_prep_integration ... ok [INFO] [stdout] test chunk::test::chunk_roundtrip ... ok [INFO] [stdout] test index::test::construct_index_lowercase ... ok [INFO] [stdout] test index::test::reference_candidate has been running for over 60 seconds [INFO] [stdout] test index::test::reference_candidate ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 71 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 68.60s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/mtsv-binner.rs (/opt/rustwide/target/debug/deps/mtsv_binner-09bfcde4a3894437) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/mtsv-build.rs (/opt/rustwide/target/debug/deps/mtsv_build-7bb6b541d5d25164) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/mtsv-chunk.rs (/opt/rustwide/target/debug/deps/mtsv_chunk-8e8a797b9576637b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/mtsv-collapse.rs (/opt/rustwide/target/debug/deps/mtsv_collapse-6c4a705088f924c3) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/mtsv-readprep.rs (/opt/rustwide/target/debug/deps/mtsv_readprep-6d61e360c363c4f5) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/mtsv-signature.rs (/opt/rustwide/target/debug/deps/mtsv_signature-d90fcbe537a4b573) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/mtsv-tree-build.rs (/opt/rustwide/target/debug/deps/mtsv_tree_build-f864614229d49d5c) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests mtsv [INFO] [stderr] warning: `...` range patterns are deprecated [INFO] [stderr] --> /opt/rustwide/workdir/src/prep_config.rs:104:11 [INFO] [stderr] | [INFO] [stderr] 104 | 67...255 => QualityEncoding::Illumina15, [INFO] [stderr] | ^^^ help: use `..=` for an inclusive range [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(ellipsis_inclusive_range_patterns)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: `...` range patterns are deprecated [INFO] [stderr] --> /opt/rustwide/workdir/src/prep_config.rs:105:11 [INFO] [stderr] | [INFO] [stderr] 105 | 64...66 => QualityEncoding::Illumina13, [INFO] [stderr] | ^^^ help: use `..=` for an inclusive range [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: `...` range patterns are deprecated [INFO] [stderr] --> /opt/rustwide/workdir/src/prep_config.rs:106:11 [INFO] [stderr] | [INFO] [stderr] 106 | 59...63 => QualityEncoding::Solexa, [INFO] [stderr] | ^^^ help: use `..=` for an inclusive range [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: 3 warnings emitted [INFO] [stderr] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "eb217fe17c5c554524b827b2e050d3d0e901e48ecf37f3e3d81a2a6ef22ed7b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eb217fe17c5c554524b827b2e050d3d0e901e48ecf37f3e3d81a2a6ef22ed7b2", kill_on_drop: false }` [INFO] [stdout] eb217fe17c5c554524b827b2e050d3d0e901e48ecf37f3e3d81a2a6ef22ed7b2