[INFO] cloning repository https://github.com/stjude/fqlib [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stjude/fqlib" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 6bcc685ca7b650c9e69e2044f0cb065c9dc82e5c [INFO] testing stjude/fqlib against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib" "/workspace/builds/worker-18/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-18/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stjude/fqlib on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stjude/fqlib [INFO] finished tweaking git repo https://github.com/stjude/fqlib [INFO] tweaked toml for git repo https://github.com/stjude/fqlib written to /workspace/builds/worker-18/source/Cargo.toml [INFO] crate git repo https://github.com/stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c59f6f9240304df0ba3f0ea62c4c3115d6c0a1e0ab9d06940e4dc2ded831298e [INFO] running `Command { std: "docker" "start" "-a" "c59f6f9240304df0ba3f0ea62c4c3115d6c0a1e0ab9d06940e4dc2ded831298e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c59f6f9240304df0ba3f0ea62c4c3115d6c0a1e0ab9d06940e4dc2ded831298e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c59f6f9240304df0ba3f0ea62c4c3115d6c0a1e0ab9d06940e4dc2ded831298e", kill_on_drop: false }` [INFO] [stdout] c59f6f9240304df0ba3f0ea62c4c3115d6c0a1e0ab9d06940e4dc2ded831298e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0cce224c66afc19979ac97c0e98435511da7837a69ee0a3a79beeae42d893824 [INFO] running `Command { std: "docker" "start" "-a" "0cce224c66afc19979ac97c0e98435511da7837a69ee0a3a79beeae42d893824", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.117 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling num_threads v0.1.3 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling time-macros v0.2.3 [INFO] [stderr] Compiling radium v0.7.0 [INFO] [stderr] Compiling tap v1.0.1 [INFO] [stderr] Compiling anyhow v1.0.53 [INFO] [stderr] Compiling pin-project-lite v0.2.8 [INFO] [stderr] Compiling no-std-compat v0.4.1 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling funty v2.0.0 [INFO] [stderr] Compiling textwrap v0.14.2 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling tracing-core v0.1.22 [INFO] [stderr] Compiling sharded-slab v0.1.4 [INFO] [stderr] Compiling thread_local v1.1.4 [INFO] [stderr] Compiling quote v1.0.15 [INFO] [stderr] Compiling os_str_bytes v6.0.0 [INFO] [stderr] Compiling wyz v0.5.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.8.0 [INFO] [stderr] Compiling tracing-log v0.1.2 [INFO] [stderr] Compiling bitvec v1.0.0 [INFO] [stderr] Compiling tracing-subscriber v0.3.8 [INFO] [stderr] Compiling getrandom v0.2.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling time v0.3.7 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling clap v3.0.14 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling git-testament-derive v0.1.13 [INFO] [stderr] Compiling tracing-attributes v0.1.19 [INFO] [stderr] Compiling git-testament v0.2.1 [INFO] [stderr] Compiling tracing v0.1.30 [INFO] [stderr] Compiling fq v0.9.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 19.74s [INFO] running `Command { std: "docker" "inspect" "0cce224c66afc19979ac97c0e98435511da7837a69ee0a3a79beeae42d893824", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0cce224c66afc19979ac97c0e98435511da7837a69ee0a3a79beeae42d893824", kill_on_drop: false }` [INFO] [stdout] 0cce224c66afc19979ac97c0e98435511da7837a69ee0a3a79beeae42d893824 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c57399f279fce50c0f7ea1d1e6648b25c327b0bc02c5fc30f83e13f8b6d67105 [INFO] running `Command { std: "docker" "start" "-a" "c57399f279fce50c0f7ea1d1e6648b25c327b0bc02c5fc30f83e13f8b6d67105", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling fq v0.9.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.28s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/fq-35ca433fdaffdec3) [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/fq-6c31fab7a6e2bca8) [INFO] running `Command { std: "docker" "inspect" "c57399f279fce50c0f7ea1d1e6648b25c327b0bc02c5fc30f83e13f8b6d67105", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c57399f279fce50c0f7ea1d1e6648b25c327b0bc02c5fc30f83e13f8b6d67105", kill_on_drop: false }` [INFO] [stdout] c57399f279fce50c0f7ea1d1e6648b25c327b0bc02c5fc30f83e13f8b6d67105 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ec35e650e96a9ab7e2db78accd89ef0f9631e41831903e10cc438262903db738 [INFO] running `Command { std: "docker" "start" "-a" "ec35e650e96a9ab7e2db78accd89ef0f9631e41831903e10cc438262903db738", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fq-35ca433fdaffdec3) [INFO] [stdout] [INFO] [stdout] running 56 tests [INFO] [stdout] test commands::filter::tests::test_copy_filtered ... ok [INFO] [stdout] test commands::subsample::tests::test_subsample_exact_single ... ok [INFO] [stdout] test commands::subsample::tests::test_subsample_single ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message ... ok [INFO] [stdout] test distributions::character::tests::test_sample ... ok [INFO] [stdout] test fastq::reader::tests::test_read_line ... ok [INFO] [stdout] test generator::builder::tests::test_build ... ok [INFO] [stdout] test commands::subsample::tests::test_subsample_paired ... ok [INFO] [stdout] test commands::filter::tests::test_name_id ... ok [INFO] [stdout] test fastq::record::tests::test_clear ... ok [INFO] [stdout] test fastq::writer::tests::test_write_record ... ok [INFO] [stdout] test fastq::reader::tests::test_read_record ... ok [INFO] [stdout] test commands::filter::tests::test_read_names ... ok [INFO] [stdout] test generator::tests::test_next_record ... ok [INFO] [stdout] test commands::subsample::tests::test_subsample_exact_paired ... ok [INFO] [stdout] test validators::paired::names::tests::test_name ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message_with_no_col_no ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_level ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_new ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_validate ... ok [INFO] [stdout] test validators::paired::names::tests::test_validate ... ok [INFO] [stdout] test validators::single::complete::tests::test_code ... ok [INFO] [stdout] test validators::single::complete::tests::test_level ... ok [INFO] [stdout] test validators::single::complete::tests::test_name ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_name ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_code ... ok [INFO] [stdout] test validators::single::name::tests::test_name ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_code ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_level ... ok [INFO] [stdout] test generator::tests::test_next_record_with_read_length ... ok [INFO] [stdout] test validators::single::name::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_level ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_validate ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_name ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_level ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_code ... ok [INFO] [stdout] test validators::single::complete::tests::test_validate ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_code ... ok [INFO] [stdout] test validators::paired::names::tests::test_level ... ok [INFO] [stdout] test validators::paired::names::tests::test_code ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_level ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_name ... ok [INFO] [stdout] test validators::single::name::tests::test_code ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_validate ... ok [INFO] [stdout] test validators::single::name::tests::test_level ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_is_empty ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_code ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_name ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators ... ok [INFO] [stdout] test validators::validation_level::tests::test_from_str ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::tests::test_filter_validators ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators_with_disabled_validators ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 56 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/fq-6c31fab7a6e2bca8) [INFO] [stdout] [INFO] [stderr] Doc-tests fq [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test src/generator.rs - generator::Generator::next_record (line 123) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::is_empty (line 86) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_rng (line 83) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::insert (line 63) ... ok [INFO] [stdout] test src/fastq/record.rs - fastq::record::Record::reset (line 74) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator (line 22) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::new (line 55) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::next_record_with_name (line 142) ... ok [INFO] [stdout] test src/distributions/character.rs - distributions::character::Character (line 10) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.44s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ec35e650e96a9ab7e2db78accd89ef0f9631e41831903e10cc438262903db738", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ec35e650e96a9ab7e2db78accd89ef0f9631e41831903e10cc438262903db738", kill_on_drop: false }` [INFO] [stdout] ec35e650e96a9ab7e2db78accd89ef0f9631e41831903e10cc438262903db738