[INFO] cloning repository https://github.com/sstadick/rumi [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sstadick/rumi" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 34a92eb41857a1a1c4c096f516a0271ed57d16f4 [INFO] testing sstadick/rumi against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi" "/workspace/builds/worker-16/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-16/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/sstadick/rumi on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/sstadick/rumi [INFO] finished tweaking git repo https://github.com/sstadick/rumi [INFO] tweaked toml for git repo https://github.com/sstadick/rumi written to /workspace/builds/worker-16/source/Cargo.toml [INFO] crate git repo https://github.com/sstadick/rumi already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7016384f49295243eb84f5a5ac6390c8cc500dd4bbcc6170bba018c02a061fe3 [INFO] running `Command { std: "docker" "start" "-a" "7016384f49295243eb84f5a5ac6390c8cc500dd4bbcc6170bba018c02a061fe3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7016384f49295243eb84f5a5ac6390c8cc500dd4bbcc6170bba018c02a061fe3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7016384f49295243eb84f5a5ac6390c8cc500dd4bbcc6170bba018c02a061fe3", kill_on_drop: false }` [INFO] [stdout] 7016384f49295243eb84f5a5ac6390c8cc500dd4bbcc6170bba018c02a061fe3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cf307303525e789174f0e18df78a4c3256101409d0342fc8515af372032132fb [INFO] running `Command { std: "docker" "start" "-a" "cf307303525e789174f0e18df78a4c3256101409d0342fc8515af372032132fb", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling cfg-if v0.1.9 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling syn v0.15.39 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling smallvec v0.6.10 [INFO] [stderr] Compiling serde v1.0.97 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Compiling rayon-core v1.5.0 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling basebits v1.2.0 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling crossbeam-deque v0.6.3 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling url v2.1.0 [INFO] [stderr] Compiling rayon v1.1.0 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling backtrace v0.3.40 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.97 [INFO] [stderr] Compiling snafu v0.5.0 [INFO] [stderr] Compiling rust-htslib v0.26.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling rumi v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `umi` [INFO] [stdout] --> src/lib.rs:170:5 [INFO] [stdout] | [INFO] [stdout] 170 | umi: &'a BaseBits, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Group` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/lib.rs:167:10 [INFO] [stdout] | [INFO] [stdout] 167 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused borrow that must be used [INFO] [stdout] --> src/lib.rs:543:5 [INFO] [stdout] | [INFO] [stdout] 543 | &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the borrow produces a value [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 543 | let _ = &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 25.72s [INFO] running `Command { std: "docker" "inspect" "cf307303525e789174f0e18df78a4c3256101409d0342fc8515af372032132fb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cf307303525e789174f0e18df78a4c3256101409d0342fc8515af372032132fb", kill_on_drop: false }` [INFO] [stdout] cf307303525e789174f0e18df78a4c3256101409d0342fc8515af372032132fb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3b192405f612bb95b47ff837199922767d27dc198b07bd502f3490f3623e7a7c [INFO] running `Command { std: "docker" "start" "-a" "3b192405f612bb95b47ff837199922767d27dc198b07bd502f3490f3623e7a7c", kill_on_drop: false }` [INFO] [stderr] Compiling rumi v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `umi` [INFO] [stdout] --> src/lib.rs:170:5 [INFO] [stdout] | [INFO] [stdout] 170 | umi: &'a BaseBits, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Group` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/lib.rs:167:10 [INFO] [stdout] | [INFO] [stdout] 167 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused borrow that must be used [INFO] [stdout] --> src/lib.rs:543:5 [INFO] [stdout] | [INFO] [stdout] 543 | &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the borrow produces a value [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 543 | let _ = &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `umi` [INFO] [stdout] --> src/lib.rs:170:5 [INFO] [stdout] | [INFO] [stdout] 170 | umi: &'a BaseBits, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Group` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/lib.rs:167:10 [INFO] [stdout] | [INFO] [stdout] 167 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused borrow that must be used [INFO] [stdout] --> src/lib.rs:543:5 [INFO] [stdout] | [INFO] [stdout] 543 | &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the borrow produces a value [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 543 | let _ = &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.49s [INFO] [stderr] Executable unittests src/lib.rs (/opt/rustwide/target/debug/deps/rumi_lib-d3f3d4acb0fd3633) [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/rumi-d5238ef91cd250c2) [INFO] running `Command { std: "docker" "inspect" "3b192405f612bb95b47ff837199922767d27dc198b07bd502f3490f3623e7a7c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b192405f612bb95b47ff837199922767d27dc198b07bd502f3490f3623e7a7c", kill_on_drop: false }` [INFO] [stdout] 3b192405f612bb95b47ff837199922767d27dc198b07bd502f3490f3623e7a7c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-16/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 8a204bcd75c71c39c92fd02366cb02f588cf25c198b6cd04d37f15e7f369dc54 [INFO] running `Command { std: "docker" "start" "-a" "8a204bcd75c71c39c92fd02366cb02f588cf25c198b6cd04d37f15e7f369dc54", kill_on_drop: false }` [INFO] [stderr] warning: field is never read: `umi` [INFO] [stderr] --> src/lib.rs:170:5 [INFO] [stderr] | [INFO] [stderr] 170 | umi: &'a BaseBits, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] note: `Group` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] --> src/lib.rs:167:10 [INFO] [stderr] | [INFO] [stderr] 167 | #[derive(Debug)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused borrow that must be used [INFO] [stderr] --> src/lib.rs:543:5 [INFO] [stderr] | [INFO] [stderr] 543 | &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the borrow produces a value [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] help: use `let _ = ...` to ignore the resulting value [INFO] [stderr] | [INFO] [stderr] 543 | let _ = &graph_indicies.sort_by(|&a, &b| graph[b].freq.freq.cmp(&graph[a].freq.freq)); [INFO] [stderr] | +++++++ [INFO] [stderr] [INFO] [stderr] warning: `rumi` (lib) generated 2 warnings [INFO] [stderr] warning: `rumi` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rumi_lib-d3f3d4acb0fd3633) [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test test::test_determine_umi ... ok [INFO] [stdout] test test::test_graph_small ... ok [INFO] [stdout] test test::test_graph_umi ... ok [INFO] [stdout] test test::test_group_reads_small ... ok [INFO] [stdout] test test::test_group_reads_complex ... ok [INFO] [stdout] test test::test_read_groups_umi_tools ... ok [INFO] [stdout] test test::test_read_groups_cigars ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rumi-d5238ef91cd250c2) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests rumi_lib [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "8a204bcd75c71c39c92fd02366cb02f588cf25c198b6cd04d37f15e7f369dc54", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8a204bcd75c71c39c92fd02366cb02f588cf25c198b6cd04d37f15e7f369dc54", kill_on_drop: false }` [INFO] [stdout] 8a204bcd75c71c39c92fd02366cb02f588cf25c198b6cd04d37f15e7f369dc54