[INFO] cloning repository https://github.com/hisakatha/extract-bam-unique-alignment [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hisakatha/extract-bam-unique-alignment" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ea8276edeeb0db722d2b36832a19d00841aa91bf [INFO] testing hisakatha/extract-bam-unique-alignment against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment" "/workspace/builds/worker-62/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-62/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/hisakatha/extract-bam-unique-alignment on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment [INFO] finished tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment [INFO] tweaked toml for git repo https://github.com/hisakatha/extract-bam-unique-alignment written to /workspace/builds/worker-62/source/Cargo.toml [INFO] crate git repo https://github.com/hisakatha/extract-bam-unique-alignment already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3dc6a4f32e2e6595289d744139fbf32f4d1b52cefde48413e10f4494d1f6061f [INFO] running `Command { std: "docker" "start" "-a" "3dc6a4f32e2e6595289d744139fbf32f4d1b52cefde48413e10f4494d1f6061f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3dc6a4f32e2e6595289d744139fbf32f4d1b52cefde48413e10f4494d1f6061f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3dc6a4f32e2e6595289d744139fbf32f4d1b52cefde48413e10f4494d1f6061f", kill_on_drop: false }` [INFO] [stdout] 3dc6a4f32e2e6595289d744139fbf32f4d1b52cefde48413e10f4494d1f6061f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 48e55ba5c446b36c2d5db72213f5247a6f0720385dfe22396512935c78e04d54 [INFO] running `Command { std: "docker" "start" "-a" "48e55ba5c446b36c2d5db72213f5247a6f0720385dfe22396512935c78e04d54", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling tinyvec v1.2.0 [INFO] [stderr] Compiling unicode-bidi v0.3.5 [INFO] [stderr] Compiling form_urlencoded v1.0.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling unicode-normalization v0.1.17 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling jobserver v0.1.22 [INFO] [stderr] Compiling idna v0.2.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Compiling url v2.2.2 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling openssl-src v111.15.0+1.1.1k [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling openssl-sys v0.9.63 [INFO] [stderr] Compiling curl-sys v0.4.42+curl-7.76.0 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling thiserror v1.0.24 [INFO] [stderr] Compiling bio-types v0.11.0 [INFO] [stderr] Compiling rust-htslib v0.36.0 [INFO] [stderr] Compiling extract_bam_unique_alignment v1.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 40s [INFO] running `Command { std: "docker" "inspect" "48e55ba5c446b36c2d5db72213f5247a6f0720385dfe22396512935c78e04d54", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "48e55ba5c446b36c2d5db72213f5247a6f0720385dfe22396512935c78e04d54", kill_on_drop: false }` [INFO] [stdout] 48e55ba5c446b36c2d5db72213f5247a6f0720385dfe22396512935c78e04d54 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 01f525f1eda85954d26464f26a117771b42706bf189402b3c76f1206f837f31a [INFO] running `Command { std: "docker" "start" "-a" "01f525f1eda85954d26464f26a117771b42706bf189402b3c76f1206f837f31a", kill_on_drop: false }` [INFO] [stderr] Compiling extract_bam_unique_alignment v1.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.69s [INFO] [stderr] Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/extract_bam_unique_alignment-c0ab7ab75bf3e0be) [INFO] running `Command { std: "docker" "inspect" "01f525f1eda85954d26464f26a117771b42706bf189402b3c76f1206f837f31a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "01f525f1eda85954d26464f26a117771b42706bf189402b3c76f1206f837f31a", kill_on_drop: false }` [INFO] [stdout] 01f525f1eda85954d26464f26a117771b42706bf189402b3c76f1206f837f31a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 3f353e79ba66e6157c6d52885e93c6dc9e372ffbd7758a9e1b1e082cb738e123 [INFO] running `Command { std: "docker" "start" "-a" "3f353e79ba66e6157c6d52885e93c6dc9e372ffbd7758a9e1b1e082cb738e123", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.83s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/extract_bam_unique_alignment-c0ab7ab75bf3e0be) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "3f353e79ba66e6157c6d52885e93c6dc9e372ffbd7758a9e1b1e082cb738e123", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3f353e79ba66e6157c6d52885e93c6dc9e372ffbd7758a9e1b1e082cb738e123", kill_on_drop: false }` [INFO] [stdout] 3f353e79ba66e6157c6d52885e93c6dc9e372ffbd7758a9e1b1e082cb738e123