[INFO] cloning repository https://github.com/bow/gtetools [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bow/gtetools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbow%2Fgtetools", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbow%2Fgtetools'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f3deceb46e062ff5e4de4a4623da8ceecb31d3aa [INFO] testing bow/gtetools against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbow%2Fgtetools" "/workspace/builds/worker-14/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/bow/gtetools on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/bow/gtetools [INFO] finished tweaking git repo https://github.com/bow/gtetools [INFO] tweaked toml for git repo https://github.com/bow/gtetools written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate git repo https://github.com/bow/gtetools already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b9895e74bd748f666139c4b47818d6ee8e97027761f63859769a14e5bb3dd8bf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b9895e74bd748f666139c4b47818d6ee8e97027761f63859769a14e5bb3dd8bf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b9895e74bd748f666139c4b47818d6ee8e97027761f63859769a14e5bb3dd8bf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b9895e74bd748f666139c4b47818d6ee8e97027761f63859769a14e5bb3dd8bf", kill_on_drop: false }` [INFO] [stdout] b9895e74bd748f666139c4b47818d6ee8e97027761f63859769a14e5bb3dd8bf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] fb776dfcf3f00e8eeaae51ec8e1b74080d7390683c33ca424433be9928b14b6b [INFO] running `Command { std: "docker" "start" "-a" "fb776dfcf3f00e8eeaae51ec8e1b74080d7390683c33ca424433be9928b14b6b", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.23 [INFO] [stderr] Compiling num-traits v0.1.39 [INFO] [stderr] Compiling serde v1.0.8 [INFO] [stderr] Compiling regex-syntax v0.4.1 [INFO] [stderr] Compiling byteorder v1.0.0 [INFO] [stderr] Compiling either v1.1.0 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling utf8-ranges v1.0.0 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling quick-error v1.2.0 [INFO] [stderr] Compiling unicode-width v0.1.4 [INFO] [stderr] Compiling linked-hash-map v0.4.2 [INFO] [stderr] Compiling unicode-segmentation v1.2.0 [INFO] [stderr] Compiling strsim v0.6.0 [INFO] [stderr] Compiling unreachable v0.1.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling serde_derive v1.0.8 [INFO] [stderr] Compiling itertools v0.6.0 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling rand v0.3.15 [INFO] [stderr] Compiling memchr v1.0.1 [INFO] [stderr] Compiling thread-id v3.1.0 [INFO] [stderr] Compiling term_size v0.3.0 [INFO] [stderr] Compiling thread_local v0.3.3 [INFO] [stderr] Compiling aho-corasick v0.6.3 [INFO] [stderr] Compiling csv v0.15.0 [INFO] [stderr] Compiling num-integer v0.1.34 [INFO] [stderr] Compiling num-complex v0.1.38 [INFO] [stderr] Compiling itertools-num v0.1.1 [INFO] [stderr] Compiling ordered-float v0.5.0 [INFO] [stderr] Compiling num-iter v0.1.33 [INFO] [stderr] Compiling regex v0.2.2 [INFO] [stderr] Compiling num-bigint v0.1.39 [INFO] [stderr] Compiling num-rational v0.1.38 [INFO] [stderr] Compiling num v0.1.39 [INFO] [stderr] Compiling nalgebra v0.10.1 [INFO] [stderr] Compiling vec_map v0.8.0 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling clap v2.24.2 [INFO] [stderr] Compiling bio v0.13.0 (https://github.com/bow/rust-bio.git?rev=00b5152#00b5152b) [INFO] [stderr] Compiling gte v0.1.0 (/opt/rustwide/workdir/gte) [INFO] [stdout] warning: unnecessary parentheses around block return value [INFO] [stdout] --> gte/src/model.rs:1715:13 [INFO] [stdout] | [INFO] [stdout] 1715 | (3 - (cast_cur_frame - cur_span) % 3) [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 1715 - (3 - (cast_cur_frame - cur_span) % 3) [INFO] [stdout] 1715 + 3 - (cast_cur_frame - cur_span) % 3 [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:926:1 [INFO] [stdout] | [INFO] [stdout] 926 | / quick_error! { [INFO] [stdout] 927 | | /// Errors that occur when building genes, transcripts, or exons. [INFO] [stdout] 928 | | #[derive(Debug)] [INFO] [stdout] 929 | | pub enum ModelError { [INFO] [stdout] ... | [INFO] [stdout] 1011 | | } [INFO] [stdout] 1012 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:926:1 [INFO] [stdout] | [INFO] [stdout] 926 | / quick_error! { [INFO] [stdout] 927 | | /// Errors that occur when building genes, transcripts, or exons. [INFO] [stdout] 928 | | #[derive(Debug)] [INFO] [stdout] 929 | | pub enum ModelError { [INFO] [stdout] ... | [INFO] [stdout] 1011 | | } [INFO] [stdout] 1012 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:926:1 [INFO] [stdout] | [INFO] [stdout] 926 | / quick_error! { [INFO] [stdout] 927 | | /// Errors that occur when building genes, transcripts, or exons. [INFO] [stdout] 928 | | #[derive(Debug)] [INFO] [stdout] 929 | | pub enum ModelError { [INFO] [stdout] ... | [INFO] [stdout] 1011 | | } [INFO] [stdout] 1012 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:926:1 [INFO] [stdout] | [INFO] [stdout] 926 | / quick_error! { [INFO] [stdout] 927 | | /// Errors that occur when building genes, transcripts, or exons. [INFO] [stdout] 928 | | #[derive(Debug)] [INFO] [stdout] 929 | | pub enum ModelError { [INFO] [stdout] ... | [INFO] [stdout] 1011 | | } [INFO] [stdout] 1012 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:27:1 [INFO] [stdout] | [INFO] [stdout] 27 | / quick_error! { [INFO] [stdout] 28 | | /// Errors that occur when reading or writing refFlat files. [INFO] [stdout] 29 | | #[derive(Debug)] [INFO] [stdout] 30 | | pub enum RefFlatError { [INFO] [stdout] ... | [INFO] [stdout] 65 | | } [INFO] [stdout] 66 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:27:1 [INFO] [stdout] | [INFO] [stdout] 27 | / quick_error! { [INFO] [stdout] 28 | | /// Errors that occur when reading or writing refFlat files. [INFO] [stdout] 29 | | #[derive(Debug)] [INFO] [stdout] 30 | | pub enum RefFlatError { [INFO] [stdout] ... | [INFO] [stdout] 65 | | } [INFO] [stdout] 66 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:27:1 [INFO] [stdout] | [INFO] [stdout] 27 | / quick_error! { [INFO] [stdout] 28 | | /// Errors that occur when reading or writing refFlat files. [INFO] [stdout] 29 | | #[derive(Debug)] [INFO] [stdout] 30 | | pub enum RefFlatError { [INFO] [stdout] ... | [INFO] [stdout] 65 | | } [INFO] [stdout] 66 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:68:1 [INFO] [stdout] | [INFO] [stdout] 68 | / quick_error! { [INFO] [stdout] 69 | | /// Errors that occur when reading GFF file variants. [INFO] [stdout] 70 | | #[derive(Debug)] [INFO] [stdout] 71 | | pub enum GffError { [INFO] [stdout] ... | [INFO] [stdout] 142 | | } [INFO] [stdout] 143 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:68:1 [INFO] [stdout] | [INFO] [stdout] 68 | / quick_error! { [INFO] [stdout] 69 | | /// Errors that occur when reading GFF file variants. [INFO] [stdout] 70 | | #[derive(Debug)] [INFO] [stdout] 71 | | pub enum GffError { [INFO] [stdout] ... | [INFO] [stdout] 142 | | } [INFO] [stdout] 143 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:68:1 [INFO] [stdout] | [INFO] [stdout] 68 | / quick_error! { [INFO] [stdout] 69 | | /// Errors that occur when reading GFF file variants. [INFO] [stdout] 70 | | #[derive(Debug)] [INFO] [stdout] 71 | | pub enum GffError { [INFO] [stdout] ... | [INFO] [stdout] 142 | | } [INFO] [stdout] 143 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:68:1 [INFO] [stdout] | [INFO] [stdout] 68 | / quick_error! { [INFO] [stdout] 69 | | /// Errors that occur when reading GFF file variants. [INFO] [stdout] 70 | | #[derive(Debug)] [INFO] [stdout] 71 | | pub enum GffError { [INFO] [stdout] ... | [INFO] [stdout] 142 | | } [INFO] [stdout] 143 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:68:1 [INFO] [stdout] | [INFO] [stdout] 68 | / quick_error! { [INFO] [stdout] 69 | | /// Errors that occur when reading GFF file variants. [INFO] [stdout] 70 | | #[derive(Debug)] [INFO] [stdout] 71 | | pub enum GffError { [INFO] [stdout] ... | [INFO] [stdout] 142 | | } [INFO] [stdout] 143 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:68:1 [INFO] [stdout] | [INFO] [stdout] 68 | / quick_error! { [INFO] [stdout] 69 | | /// Errors that occur when reading GFF file variants. [INFO] [stdout] 70 | | #[derive(Debug)] [INFO] [stdout] 71 | | pub enum GffError { [INFO] [stdout] ... | [INFO] [stdout] 142 | | } [INFO] [stdout] 143 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:958:38 [INFO] [stdout] | [INFO] [stdout] 958 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:964:38 [INFO] [stdout] | [INFO] [stdout] 964 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:970:38 [INFO] [stdout] | [INFO] [stdout] 970 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:978:38 [INFO] [stdout] | [INFO] [stdout] 978 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:985:38 [INFO] [stdout] | [INFO] [stdout] 985 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:991:38 [INFO] [stdout] | [INFO] [stdout] 991 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:997:38 [INFO] [stdout] | [INFO] [stdout] 997 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:1003:38 [INFO] [stdout] | [INFO] [stdout] 1003 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:1009:38 [INFO] [stdout] | [INFO] [stdout] 1009 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:936:48 [INFO] [stdout] | [INFO] [stdout] 936 | ref otherwise => otherwise.description(), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/model.rs:942:29 [INFO] [stdout] | [INFO] [stdout] 942 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:36:38 [INFO] [stdout] | [INFO] [stdout] 36 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:42:38 [INFO] [stdout] | [INFO] [stdout] 42 | ... self_.description(), gid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:56:38 [INFO] [stdout] | [INFO] [stdout] 56 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:54:29 [INFO] [stdout] | [INFO] [stdout] 54 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_refflat.rs:61:29 [INFO] [stdout] | [INFO] [stdout] 61 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:88:38 [INFO] [stdout] | [INFO] [stdout] 88 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:94:38 [INFO] [stdout] | [INFO] [stdout] 94 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:104:38 [INFO] [stdout] | [INFO] [stdout] 104 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:110:38 [INFO] [stdout] | [INFO] [stdout] 110 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:116:38 [INFO] [stdout] | [INFO] [stdout] 116 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:123:38 [INFO] [stdout] | [INFO] [stdout] 123 | ... self_.description(), tid.as_deref().unwrap_or(DEF_ID)) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:131:29 [INFO] [stdout] | [INFO] [stdout] 131 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/io_gff.rs:137:29 [INFO] [stdout] | [INFO] [stdout] 137 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/lib.rs:50:29 [INFO] [stdout] | [INFO] [stdout] 50 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/lib.rs:57:29 [INFO] [stdout] | [INFO] [stdout] 57 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> gte/src/lib.rs:64:29 [INFO] [stdout] | [INFO] [stdout] 64 | description(err.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `utils::OptionDeref` [INFO] [stdout] --> gte/src/model.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use utils::OptionDeref; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `OptionDeref` [INFO] [stdout] --> gte/src/io_refflat.rs:24:13 [INFO] [stdout] | [INFO] [stdout] 24 | use utils::{OptionDeref, update_seq_name}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `OptionDeref` [INFO] [stdout] --> gte/src/io_gff.rs:26:13 [INFO] [stdout] | [INFO] [stdout] 26 | use utils::{OptionDeref, update_seq_name}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> gte/src/model.rs:1650:9 [INFO] [stdout] | [INFO] [stdout] 1650 | for mut exon in exons.iter_mut().rev() { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> gte/src/model.rs:1685:9 [INFO] [stdout] | [INFO] [stdout] 1685 | for mut exon in exons_miter { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0515]: cannot return value referencing local variable `err` [INFO] [stdout] --> gte/src/model.rs:933:17 [INFO] [stdout] | [INFO] [stdout] 933 | / match err { [INFO] [stdout] 934 | | &IntervalError::InvalidRange => [INFO] [stdout] 935 | | "interval start coordinate larger than its end coordinate", [INFO] [stdout] 936 | | ref otherwise => otherwise.description(), [INFO] [stdout] | | ------------- `err` is borrowed here [INFO] [stdout] 937 | | }) [INFO] [stdout] | |_________________^ returns a value referencing data owned by the current function [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error; 46 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0515`. [INFO] [stdout] [INFO] [stderr] error: could not compile `gte` due to 2 previous errors; 46 warnings emitted [INFO] running `Command { std: "docker" "inspect" "fb776dfcf3f00e8eeaae51ec8e1b74080d7390683c33ca424433be9928b14b6b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fb776dfcf3f00e8eeaae51ec8e1b74080d7390683c33ca424433be9928b14b6b", kill_on_drop: false }` [INFO] [stdout] fb776dfcf3f00e8eeaae51ec8e1b74080d7390683c33ca424433be9928b14b6b