[INFO] cloning repository https://github.com/DocKDE/pdbman
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/DocKDE/pdbman" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDocKDE%2Fpdbman", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDocKDE%2Fpdbman'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 75fd97f22a3ff4f3ffc8849762f01e8d40dea5c0
[INFO] testing DocKDE/pdbman against beta-2022-04-10 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDocKDE%2Fpdbman" "/workspace/builds/worker-19/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-19/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/DocKDE/pdbman on toolchain beta-2022-04-10
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/DocKDE/pdbman
[INFO] finished tweaking git repo https://github.com/DocKDE/pdbman
[INFO] tweaked toml for git repo https://github.com/DocKDE/pdbman written to /workspace/builds/worker-19/source/Cargo.toml
[INFO] crate git repo https://github.com/DocKDE/pdbman already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e1a21f28b4cf8de55389861922c56851e83478ab0804c27dc8ce4cac2e52dd03
[INFO] running `Command { std: "docker" "start" "-a" "e1a21f28b4cf8de55389861922c56851e83478ab0804c27dc8ce4cac2e52dd03", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e1a21f28b4cf8de55389861922c56851e83478ab0804c27dc8ce4cac2e52dd03", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e1a21f28b4cf8de55389861922c56851e83478ab0804c27dc8ce4cac2e52dd03", kill_on_drop: false }`
[INFO] [stdout] e1a21f28b4cf8de55389861922c56851e83478ab0804c27dc8ce4cac2e52dd03
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2722a07ad7a91e38bb9d3bf369f83e257463b65eb74863ae41bd6a8607edce40
[INFO] running `Command { std: "docker" "start" "-a" "2722a07ad7a91e38bb9d3bf369f83e257463b65eb74863ae41bd6a8607edce40", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.118
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling smallvec v1.8.0
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.7
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.7
[INFO] [stderr]    Compiling io-lifetimes v0.4.4
[INFO] [stderr]    Compiling signal-hook v0.3.13
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]    Compiling parking_lot_core v0.8.5
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling rustix v0.32.1
[INFO] [stderr]    Compiling ucd-trie v0.1.3
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling heapless v0.6.1
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling maplit v1.0.2
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling linux-raw-sys v0.0.37
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling pdqselect v0.1.0
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling anyhow v1.0.53
[INFO] [stderr]    Compiling endian-type v0.1.2
[INFO] [stderr]    Compiling strum v0.22.0
[INFO] [stderr]    Compiling utf8parse v0.2.0
[INFO] [stderr]    Compiling once_cell v1.9.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling strum v0.23.0
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling instant v0.1.12
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling indexmap v1.8.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling nibble_vec v0.1.0
[INFO] [stderr]    Compiling lock_api v0.4.6
[INFO] [stderr]    Compiling hash32 v0.1.1
[INFO] [stderr]    Compiling textwrap v0.14.2
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]    Compiling radix_trie v0.2.1
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling os_str_bytes v6.0.0
[INFO] [stderr]    Compiling generic-array v0.14.5
[INFO] [stderr]    Compiling unicase v2.6.0
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling signal-hook-registry v1.4.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling mio v0.7.14
[INFO] [stderr]    Compiling dirs-sys-next v0.1.2
[INFO] [stderr]    Compiling generic-array v0.13.3
[INFO] [stderr]    Compiling generic-array v0.12.4
[INFO] [stderr]    Compiling crossbeam-channel v0.5.2
[INFO] [stderr]    Compiling nix v0.23.1
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]    Compiling colored v2.0.0
[INFO] [stderr]    Compiling dirs-next v2.0.0
[INFO] [stderr]    Compiling parking_lot v0.11.2
[INFO] [stderr]    Compiling pest_meta v2.1.3
[INFO] [stderr]    Compiling doc-cfg v0.1.0
[INFO] [stderr]    Compiling signal-hook-mio v0.2.1
[INFO] [stderr]    Compiling crossterm v0.22.1
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling as-slice v0.1.5
[INFO] [stderr]    Compiling clap v3.1.0
[INFO] [stderr]    Compiling fd-lock v3.0.3
[INFO] [stderr]    Compiling env_logger v0.9.0
[INFO] [stderr]    Compiling rstar v0.9.2
[INFO] [stderr]    Compiling rustyline v9.1.2
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling lazy-regex-proc_macros v2.2.2
[INFO] [stderr]    Compiling strum_macros v0.22.0
[INFO] [stderr]    Compiling rustyline-derive v0.6.0
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling lazy-regex v2.2.2
[INFO] [stderr]    Compiling comfy-table v5.0.0
[INFO] [stderr]    Compiling pdbtbx v0.9.0 (https://github.com/nonnominandus/pdbtbx?branch=master#87b56963)
[INFO] [stderr]    Compiling pdbman v0.9.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 51s
[INFO] running `Command { std: "docker" "inspect" "2722a07ad7a91e38bb9d3bf369f83e257463b65eb74863ae41bd6a8607edce40", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2722a07ad7a91e38bb9d3bf369f83e257463b65eb74863ae41bd6a8607edce40", kill_on_drop: false }`
[INFO] [stdout] 2722a07ad7a91e38bb9d3bf369f83e257463b65eb74863ae41bd6a8607edce40
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5bb11492946917c7df3ae6ed6fb0059111adfc1d75431b255a340135e0a86e07
[INFO] running `Command { std: "docker" "start" "-a" "5bb11492946917c7df3ae6ed6fb0059111adfc1d75431b255a340135e0a86e07", kill_on_drop: false }`
[INFO] [stderr]    Compiling pdbman v0.9.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 11.20s
[INFO] [stderr]   Executable unittests src/main.rs (/opt/rustwide/target/debug/deps/pdbman-98dce919c2426d23)
[INFO] running `Command { std: "docker" "inspect" "5bb11492946917c7df3ae6ed6fb0059111adfc1d75431b255a340135e0a86e07", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5bb11492946917c7df3ae6ed6fb0059111adfc1d75431b255a340135e0a86e07", kill_on_drop: false }`
[INFO] [stdout] 5bb11492946917c7df3ae6ed6fb0059111adfc1d75431b255a340135e0a86e07
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 535184c56c198fdd3983b90a923463a4f639f53db080b006e3128c59ef5f6bab
[INFO] running `Command { std: "docker" "start" "-a" "535184c56c198fdd3983b90a923463a4f639f53db080b006e3128c59ef5f6bab", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/pdbman-98dce919c2426d23)
[INFO] [stdout] 
[INFO] [stdout] running 23 tests
[INFO] [stdout] ╭────────┬────────────┬───────────────╮
[INFO] [stdout] │        │ # of Atoms │ # of Residues │
[INFO] [stdout] ╞════════╪════════════╪═══════════════╡
[INFO] [stdout] │ QM1    │ 0          │ 0             │
[INFO] [stdout] ├────────┼────────────┼───────────────┤
[INFO] [stdout] │ QM2    │ 0          │ 0             │
[INFO] [stdout] ├────────┼────────────┼───────────────┤
[INFO] [stdout] │ Active │ 0          │ 0             │
[INFO] [stdout] ├────────┼────────────┼───────────────┤
[INFO] [stdout] │ Total  │ 83         │ 7             │
[INFO] [stdout] ╰────────┴────────────┴───────────────╯
[INFO] [stdout] test functions::analyze::tests::analyze_residues_test ... ok
[INFO] [stdout] test dispatch::tests::return_nothing ... ok
[INFO] [stdout] test functions::analyze::tests::analyze_atoms_test ... ok
[INFO] [stdout] test functions::get::tests::residue_sphere_test ... ok
[INFO] [stdout] test functions::query::tests::query_atoms_test ... ok
[INFO] [stdout] test functions::edit::tests::remove_all_test ... ok
[INFO] [stdout] test functions::edit::tests::remove_active_region ... ok
[INFO] [stdout] test functions::parse::tests::parse_residue_list_test ... ok
[INFO] [stdout] test functions::edit::tests::remove_qm_region ... ok
[INFO] [stdout] test functions::parse::tests::parse_atomic_list_test ... ok
[INFO] [stdout] test functions::get::tests::atom_sphere_test ... ok
[INFO] [stdout] test functions::get::tests::get_atomlist_test ... ok
[INFO] [stdout] test functions::edit::tests::edit_atoms_unchecked_test ... ok
[INFO] [stdout] test dispatch::tests::add_existing - should panic ... ok
[INFO] [stdout] test dispatch::tests::remove_empty - should panic ... ok
[INFO] [stdout] test dispatch::tests::add_qm1 ... ok
[INFO] [stdout] test dispatch::tests::add_qm2 ... ok
[INFO] [stdout] test dispatch::tests::checked_add ... ok
[INFO] [stdout] test dispatch::tests::remove_qm1 ... ok
[INFO] [stdout] test dispatch::tests::add_active ... ok
[INFO] [stdout] test dispatch::tests::checked_remove ... ok
[INFO] [stdout] test dispatch::tests::overwrite_qm ... ok
[INFO] [stdout] test dispatch::tests::remove_active ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.31s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "535184c56c198fdd3983b90a923463a4f639f53db080b006e3128c59ef5f6bab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "535184c56c198fdd3983b90a923463a4f639f53db080b006e3128c59ef5f6bab", kill_on_drop: false }`
[INFO] [stdout] 535184c56c198fdd3983b90a923463a4f639f53db080b006e3128c59ef5f6bab