[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] testing 38/pyd4 against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] eff89fca2d5d0c25eae8eab95084b7f884add950e363e1ba6e9afdc42f6be625 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "eff89fca2d5d0c25eae8eab95084b7f884add950e363e1ba6e9afdc42f6be625", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "eff89fca2d5d0c25eae8eab95084b7f884add950e363e1ba6e9afdc42f6be625", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eff89fca2d5d0c25eae8eab95084b7f884add950e363e1ba6e9afdc42f6be625", kill_on_drop: false }` [INFO] [stdout] eff89fca2d5d0c25eae8eab95084b7f884add950e363e1ba6e9afdc42f6be625 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 839d1bbc66d83f240604e75177ae5b53d8735f350b85e362087d62eef11e2e94 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "839d1bbc66d83f240604e75177ae5b53d8735f350b85e362087d62eef11e2e94", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling parking_lot_core v0.8.3 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Compiling indoc v0.3.6 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-bbc4a6db7e8dca19/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-0ba75159be7c054d/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-0ba75159be7c054d/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x559e87c4aa5d - std::backtrace_rs::backtrace::libunwind::trace::ha359b7f0090e2792 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x559e87c4aa5d - std::backtrace_rs::backtrace::trace_unsynchronized::h0584631f25c1d70e [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x559e87c4aa5d - std::sys_common::backtrace::_print_fmt::hdadffd97d279ff14 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x559e87c4aa5d - ::fmt::h26f189e611080a74 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x559e87c6f94c - core::fmt::write::hfb5d11dfe037e8b7 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/fmt/mod.rs:1194:17 [INFO] [stderr] 5: 0x559e87c47681 - std::io::Write::write_fmt::ha30651f608022a46 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/io/mod.rs:1655:15 [INFO] [stderr] 6: 0x559e87c4c8f5 - std::sys_common::backtrace::_print::h7a0e44402913ba60 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x559e87c4c8f5 - std::sys_common::backtrace::print::h9767dc455a84e728 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x559e87c4c8f5 - std::panicking::default_hook::{{closure}}::h60afd6c8b12988ad [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x559e87c4c5a9 - std::panicking::default_hook::ha7b9bac6813f9d21 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x559e87c4ce42 - std::panicking::rust_panic_with_hook::h7b117a162a6f8664 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x559e87c4cce9 - std::panicking::begin_panic_handler::{{closure}}::h346750923c608600 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:586:13 [INFO] [stderr] 12: 0x559e87c4af14 - std::sys_common::backtrace::__rust_end_short_backtrace::h768c56c6a0c055c0 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x559e87c4ca59 - rust_begin_unwind [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x559e87706b43 - core::panicking::panic_fmt::h5c41cb2fa118fdbc [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x559e87706a0d - core::panicking::panic::h19a70c01bbabd538 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/panicking.rs:48:5 [INFO] [stderr] 16: 0x559e877076f9 - build_script_build::build_own_htslib::hb58d56ce6459fbd3 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] 17: 0x559e87707b34 - build_script_build::main::h1aee26529520cb55 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:66:9 [INFO] [stderr] 18: 0x559e8770973b - core::ops::function::FnOnce::call_once::he0fb94e6299080ab [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x559e8770b4de - std::sys_common::backtrace::__rust_begin_short_backtrace::hcff92875d865bee7 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 20: 0x559e877096b1 - std::rt::lang_start::{{closure}}::hda5c49497a22afbd [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x559e87c435fe - core::ops::function::impls:: for &F>::call_once::hae31cd38f966dcbc [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x559e87c435fe - std::panicking::try::do_call::h4a4c12a32b804624 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:492:40 [INFO] [stderr] 23: 0x559e87c435fe - std::panicking::try::h87f80f5db1929b60 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:456:19 [INFO] [stderr] 24: 0x559e87c435fe - std::panic::catch_unwind::hbc53afd5a2bdc195 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panic.rs:137:14 [INFO] [stderr] 25: 0x559e87c435fe - std::rt::lang_start_internal::{{closure}}::h2e62ddd08385fac8 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x559e87c435fe - std::panicking::try::do_call::h04b85b79b362213e [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:492:40 [INFO] [stderr] 27: 0x559e87c435fe - std::panicking::try::h428fba6a4941d8ed [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:456:19 [INFO] [stderr] 28: 0x559e87c435fe - std::panic::catch_unwind::hd73c90258412492e [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panic.rs:137:14 [INFO] [stderr] 29: 0x559e87c435fe - std::rt::lang_start_internal::h26255896a96668b5 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x559e87709680 - std::rt::lang_start::h80461dd0aedaefc1 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x559e877081bc - main [INFO] [stderr] 32: 0x7fbdab12d0b3 - __libc_start_main [INFO] [stderr] 33: 0x559e87706e3e - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "839d1bbc66d83f240604e75177ae5b53d8735f350b85e362087d62eef11e2e94", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "839d1bbc66d83f240604e75177ae5b53d8735f350b85e362087d62eef11e2e94", kill_on_drop: false }` [INFO] [stdout] 839d1bbc66d83f240604e75177ae5b53d8735f350b85e362087d62eef11e2e94