[INFO] cloning repository https://github.com/0ncorhynchus/pdbstat [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/0ncorhynchus/pdbstat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109 [INFO] testing 0ncorhynchus/pdbstat against beta-2022-04-10 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-43/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-43/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain beta-2022-04-10 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-43/source/Cargo.toml [INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-04-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 153c7a329987d7faea5d244942163641be848b2bf225ca47877789cd20261e6c [INFO] running `Command { std: "docker" "start" "-a" "153c7a329987d7faea5d244942163641be848b2bf225ca47877789cd20261e6c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "153c7a329987d7faea5d244942163641be848b2bf225ca47877789cd20261e6c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "153c7a329987d7faea5d244942163641be848b2bf225ca47877789cd20261e6c", kill_on_drop: false }` [INFO] [stdout] 153c7a329987d7faea5d244942163641be848b2bf225ca47877789cd20261e6c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-04-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f0295eeb2acdd3ef0bf767ce5c388108d97d5093b7353ec0dec154b674f9d138 [INFO] running `Command { std: "docker" "start" "-a" "f0295eeb2acdd3ef0bf767ce5c388108d97d5093b7353ec0dec154b674f9d138", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling gcc v0.3.51 [INFO] [stderr] Compiling libc v0.2.24 [INFO] [stderr] Compiling cmake v0.1.24 [INFO] [stderr] Compiling chemfiles-sys v0.7.40 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-4857b23a16f2fff0/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-8a8990df4a4b1616/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-8a8990df4a4b1616/out/build [INFO] [stderr] running: "cmake" "--build" "." 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Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:167: chemfiles/CMakeFiles/chemfiles.dir/src/Topology.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:349: chemfiles/CMakeFiles/chemfiles.dir/src/formats/TNG.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:258: chemfiles/CMakeFiles/chemfiles.dir/src/capi/residue.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:154: chemfiles/CMakeFiles/chemfiles.dir/src/Selections.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:362: chemfiles/CMakeFiles/chemfiles.dir/src/formats/XYZ.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:323: chemfiles/CMakeFiles/chemfiles.dir/src/formats/NcFormat.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:336: chemfiles/CMakeFiles/chemfiles.dir/src/formats/PDB.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:252: chemfiles/CMakeFiles/chemfiles.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e36cbaa43d - std::backtrace_rs::backtrace::libunwind::trace::ha359b7f0090e2792 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55e36cbaa43d - std::backtrace_rs::backtrace::trace_unsynchronized::h0584631f25c1d70e [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e36cbaa43d - std::sys_common::backtrace::_print_fmt::hdadffd97d279ff14 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x55e36cbaa43d - ::fmt::h26f189e611080a74 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x55e36cbc93dc - core::fmt::write::hfb5d11dfe037e8b7 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/fmt/mod.rs:1194:17 [INFO] [stderr] 5: 0x55e36cba73e1 - std::io::Write::write_fmt::ha30651f608022a46 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/io/mod.rs:1655:15 [INFO] [stderr] 6: 0x55e36cbabd45 - std::sys_common::backtrace::_print::h7a0e44402913ba60 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x55e36cbabd45 - std::sys_common::backtrace::print::h9767dc455a84e728 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x55e36cbabd45 - std::panicking::default_hook::{{closure}}::h60afd6c8b12988ad [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x55e36cbab9f9 - std::panicking::default_hook::ha7b9bac6813f9d21 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x55e36cbac292 - std::panicking::rust_panic_with_hook::h7b117a162a6f8664 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x55e36cbac177 - std::panicking::begin_panic_handler::{{closure}}::h346750923c608600 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x55e36cbaa8f4 - std::sys_common::backtrace::__rust_end_short_backtrace::h768c56c6a0c055c0 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x55e36cbabea9 - rust_begin_unwind [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x55e36cb58473 - core::panicking::panic_fmt::h5c41cb2fa118fdbc [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x55e36cb6021d - cmake::fail::hc13085dac6ddf3f3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] 16: 0x55e36cb5fc55 - cmake::run::hd7eb28d0a02c6bdd [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574:9 [INFO] [stderr] 17: 0x55e36cb5d95d - cmake::Config::build::h87bf708bc3582dd5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481:9 [INFO] [stderr] 18: 0x55e36cb588ce - build_script_build::main::h822e3faf0c8380d4 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19:15 [INFO] [stderr] 19: 0x55e36cb598fb - core::ops::function::FnOnce::call_once::h6274e08afa56ee03 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x55e36cb59c1e - std::sys_common::backtrace::__rust_begin_short_backtrace::h51b69d54c523669b [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 21: 0x55e36cb5aea1 - std::rt::lang_start::{{closure}}::h1ae2ab64bf5f9867 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:145:18 [INFO] [stderr] 22: 0x55e36cba35ee - core::ops::function::impls:: for &F>::call_once::hae31cd38f966dcbc [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55e36cba35ee - std::panicking::try::do_call::h4a4c12a32b804624 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:492:40 [INFO] [stderr] 24: 0x55e36cba35ee - std::panicking::try::h87f80f5db1929b60 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:456:19 [INFO] [stderr] 25: 0x55e36cba35ee - std::panic::catch_unwind::hbc53afd5a2bdc195 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x55e36cba35ee - std::rt::lang_start_internal::{{closure}}::h2e62ddd08385fac8 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x55e36cba35ee - std::panicking::try::do_call::h04b85b79b362213e [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:492:40 [INFO] [stderr] 28: 0x55e36cba35ee - std::panicking::try::h428fba6a4941d8ed [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panicking.rs:456:19 [INFO] [stderr] 29: 0x55e36cba35ee - std::panic::catch_unwind::hd73c90258412492e [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x55e36cba35ee - std::rt::lang_start_internal::h26255896a96668b5 [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x55e36cb5ae70 - std::rt::lang_start::h84f2a17684a908da [INFO] [stderr] at /rustc/7c13df853721b60a03e7c0bb084d2eb1e27a9caa/library/std/src/rt.rs:144:17 [INFO] [stderr] 32: 0x55e36cb593cc - main [INFO] [stderr] 33: 0x7fa2ebdda0b3 - __libc_start_main [INFO] [stderr] 34: 0x55e36cb5866e - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "f0295eeb2acdd3ef0bf767ce5c388108d97d5093b7353ec0dec154b674f9d138", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f0295eeb2acdd3ef0bf767ce5c388108d97d5093b7353ec0dec154b674f9d138", kill_on_drop: false }` [INFO] [stdout] f0295eeb2acdd3ef0bf767ce5c388108d97d5093b7353ec0dec154b674f9d138