[INFO] fetching crate segul 0.16.3... [INFO] testing segul-0.16.3 against 1.60.0 for beta-1.61-1 [INFO] extracting crate segul 0.16.3 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate segul 0.16.3 on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate segul 0.16.3 [INFO] finished tweaking crates.io crate segul 0.16.3 [INFO] tweaked toml for crates.io crate segul 0.16.3 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate segul 0.16.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded zeroize v1.4.1 [INFO] [stderr] Downloaded ordered-float v2.7.0 [INFO] [stderr] Downloaded thiserror-impl v1.0.26 [INFO] [stderr] Downloaded instant v0.1.10 [INFO] [stderr] Downloaded nom v6.1.2 [INFO] [stderr] Downloaded dialoguer v0.8.0 [INFO] [stderr] Downloaded radium v0.5.3 [INFO] [stderr] Downloaded redox_syscall v0.2.9 [INFO] [stderr] Downloaded alphanumeric-sort v1.4.3 [INFO] [stderr] Downloaded bitvec v0.19.5 [INFO] [stderr] Downloaded thiserror v1.0.26 [INFO] [stderr] Downloaded regex v1.4.6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 12f17466f19380890190271736297594555fa5216e7783e0777d0494de8101ab [INFO] running `Command { std: "docker" "start" "-a" "12f17466f19380890190271736297594555fa5216e7783e0777d0494de8101ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "12f17466f19380890190271736297594555fa5216e7783e0777d0494de8101ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12f17466f19380890190271736297594555fa5216e7783e0777d0494de8101ab", kill_on_drop: false }` [INFO] [stdout] 12f17466f19380890190271736297594555fa5216e7783e0777d0494de8101ab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] bd2eba59be885394ef55271a02a078b1cacb9c25656a96c33cc2f23c124ff50e [INFO] running `Command { std: "docker" "start" "-a" "bd2eba59be885394ef55271a02a078b1cacb9c25656a96c33cc2f23c124ff50e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling zeroize v1.4.1 [INFO] [stderr] Compiling arc-swap v0.4.8 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling alphanumeric-sort v1.4.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling instant v0.1.10 [INFO] [stderr] Compiling nom v6.1.2 [INFO] [stderr] Compiling ahash v0.7.4 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling os_str_bytes v6.0.0 [INFO] [stderr] Compiling bitvec v0.19.5 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling ordered-float v2.7.0 [INFO] [stderr] Compiling num-format v0.4.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling regex v1.4.6 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling terminal_size v0.1.17 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling parking_lot_core v0.8.3 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v3.1.6 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling console v0.14.1 [INFO] [stderr] Compiling indicatif v0.16.2 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling dialoguer v0.8.0 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Compiling thiserror-impl v1.0.26 [INFO] [stderr] Compiling derivative v2.2.0 [INFO] [stderr] Compiling thiserror v1.0.26 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling serde_yaml v0.8.17 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling log4rs v1.0.0 [INFO] [stderr] Compiling segul v0.16.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 42s [INFO] running `Command { std: "docker" "inspect" "bd2eba59be885394ef55271a02a078b1cacb9c25656a96c33cc2f23c124ff50e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bd2eba59be885394ef55271a02a078b1cacb9c25656a96c33cc2f23c124ff50e", kill_on_drop: false }` [INFO] [stdout] bd2eba59be885394ef55271a02a078b1cacb9c25656a96c33cc2f23c124ff50e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f629ec8ff82c457ccc319895020bc8cf9f12b9c9286b5d57918681507d2fa230 [INFO] running `Command { std: "docker" "start" "-a" "f629ec8ff82c457ccc319895020bc8cf9f12b9c9286b5d57918681507d2fa230", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling segul v0.16.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 10.07s [INFO] running `Command { std: "docker" "inspect" "f629ec8ff82c457ccc319895020bc8cf9f12b9c9286b5d57918681507d2fa230", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f629ec8ff82c457ccc319895020bc8cf9f12b9c9286b5d57918681507d2fa230", kill_on_drop: false }` [INFO] [stdout] f629ec8ff82c457ccc319895020bc8cf9f12b9c9286b5d57918681507d2fa230 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b0584b2259d420619820257193550e442518dca9832d8ed4ec4b0c7e37b4370a [INFO] running `Command { std: "docker" "start" "-a" "b0584b2259d420619820257193550e442518dca9832d8ed4ec4b0c7e37b4370a", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/segul-9984013652589374) [INFO] [stdout] [INFO] [stdout] running 107 tests [INFO] [stdout] test cli::filter::test::test_min_taxa_output_dir ... ok [INFO] [stdout] test cli::filter::test::test_min_taxa ... ok [INFO] [stdout] test core::concat::test::test_get_gaps ... ok [INFO] [stdout] test core::concat::test::test_header_datatype ... ok [INFO] [stdout] test core::split::test::test_sequence_slicing ... ok [INFO] [stdout] test core::rename::test::test_rename_seq ... ok [INFO] [stdout] test core::split::test::test_generate_new_matrix ... ok [INFO] [stdout] test core::translate::tests::test_translating_bacteria_simple ... ok [INFO] [stdout] test core::translate::tests::test_scenedesmus_mtdna_simple ... ok [INFO] [stdout] test core::split::test::test_parse_filename ... ok [INFO] [stdout] test core::translate::tests::test_translating_candid_sr1_gracil ... ok [INFO] [stdout] test core::translate::tests::test_translating_ascidian_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_alt_flatworm_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_altyeast_nu_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_cepha_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_cildashex_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_euplotid_simple ... ok [INFO] [stdout] test core::translate::tests::test_chlorophycean_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_lowercase ... ok [INFO] [stdout] test core::translate::tests::test_translating_echiflatworms_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_pachy_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_peritrich_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_rhadop_mtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_mesodinium_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_mold_etal_simple ... ok [INFO] [stdout] test core::translate::tests::test_invert_mtdna_real_sequence ... ok [INFO] [stdout] test core::translate::tests::test_translating_stdcode ... ok [INFO] [stdout] test core::translate::tests::test_translation_simple ... ok [INFO] [stdout] test core::translate::tests::test_translation_vertmtdna_simple ... ok [INFO] [stdout] test core::translate::tests::test_translating_with_gaps ... ok [INFO] [stdout] test core::translate::tests::test_translating_with_missing ... ok [INFO] [stdout] test core::extract::tests::test_get_matrix_id ... ok [INFO] [stdout] test core::translate::tests::test_translation_invertmtdna_simple ... ok [INFO] [stdout] test core::extract::tests::test_match_id ... ok [INFO] [stdout] test core::translate::tests::test_translation_yestmtdna_simple ... ok [INFO] [stdout] test helper::filenames::tests::test_create_output_fname ... ok [INFO] [stdout] test core::translate::tests::test_translation_yestmtdna ... ok [INFO] [stdout] test core::translate::tests::test_translating_thrasutochytrium_mtdna_simple ... ok [INFO] [stdout] test helper::sequence::test::test_alignment_simple ... ok [INFO] [stdout] test core::filter::test::test_min_pinf ... ok [INFO] [stdout] test helper::alphabet::test::test_check_valid_dna ... ok [INFO] [stdout] test helper::stats::test::count_parsimony_gap_test ... ok [INFO] [stdout] test helper::finder::test::id_test ... ok [INFO] [stdout] test helper::stats::test::dna_count_test ... ok [INFO] [stdout] test core::translate::tests::test_trematode_mtdna_simple ... ok [INFO] [stdout] test helper::sequence::test::test_parsing_input_fmt ... ok [INFO] [stdout] test helper::stats::test::get_site_stats_test ... ok [INFO] [stdout] test helper::stats::test::filter_min_tax_test ... ok [INFO] [stdout] test parser::delimited::test::test_parse_tsv ... ok [INFO] [stdout] test helper::stats::test::count_variable_sites_test ... ok [INFO] [stdout] test parser::delimited::test::test_parse_csv ... ok [INFO] [stdout] test parser::fasta::test::check_is_alignment_test ... ok [INFO] [stdout] test helper::stats::test::test_site_counts ... ok [INFO] [stdout] test parser::fasta::test::interleaved_fas_test ... ok [INFO] [stdout] test parser::fasta::test::check_isnot_alignment_test ... ok [INFO] [stdout] test helper::stats::test::count_parsimony_test ... ok [INFO] [stdout] test parser::fasta::test::read_fasta_simple_test ... ok [INFO] [stdout] test parser::fasta::test::simple_aa_fas_test ... ok [INFO] [stdout] test parser::nexus::test::test_check_match_ntax ... ok [INFO] [stdout] test helper::stats::test::pattern_count_test ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parse_interleave ... ok [INFO] [stdout] test helper::utils::test::time_parsing_test ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parse_ntax ... ok [INFO] [stdout] test helper::finder::test::get_files_test ... ok [INFO] [stdout] test core::concat::test::test_concat_check_result ... ok [INFO] [stdout] test helper::alphabet::test::test_check_invalid_dna ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_reading_simple ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_sequence ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_reading_tabulated ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_simple_aa ... ok [INFO] [stdout] test parser::partition::test::test_parse_partition_raxml ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parsing_object ... ok [INFO] [stdout] test core::concat::test::test_concat_nexus ... ok [INFO] [stdout] test parser::nexus::test::test_regex_command ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_reading_complete ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_parse_interleave_res ... ok [INFO] [stdout] test core::extract::tests::test_get_matrix_re ... ok [INFO] [stdout] test parser::partition::test::test_parse_partition_nexus ... ok [INFO] [stdout] test core::concat::test::test_concat_partition ... ok [INFO] [stdout] test parser::phylip::test::test_parse_matrix_interleave_phylip ... ok [INFO] [stdout] test parser::partition::test::test_parse_partition_raxml_with_whitespaces ... ok [INFO] [stdout] test parser::partition::test::test_partition_nexus_with_whitespaces ... ok [INFO] [stdout] test parser::phylip::test::test_parse_phylip_header ... ok [INFO] [stdout] test parser::phylip::test::test_phylip_simple_aa ... ok [INFO] [stdout] test parser::partition::test::test_partition_raxml_no_datatype ... ok [INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip_id ... ok [INFO] [stdout] test parser::phylip::test::test_read_int_phylip_whitespaces ... ok [INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip ... ok [INFO] [stdout] test parser::partition::test::test_parse_partition_raxml_codon ... ok [INFO] [stdout] test parser::partition::test::test_subset_regex_match ... ok [INFO] [stdout] test helper::alphabet::test::test_check_invalid_dna_panic - should panic ... ok [INFO] [stdout] test helper::finder::test::check_empty_files_test - should panic ... ok [INFO] [stdout] test writer::sequences::test::test_insert_whitespaces ... ok [INFO] [stdout] test parser::nexus::test::test_check_invalid_nexus - should panic ... ok [INFO] [stdout] test writer::sequences::test::test_chunk_seq ... ok [INFO] [stdout] test parser::phylip::test::test_read_phylip_whitespace ... ok [INFO] [stdout] test core::concat::test::test_get_alignment_panic - should panic ... ok [INFO] [stdout] test parser::phylip::test::test_read_phylip_simple ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_duplicate_panic - should panic ... ok [INFO] [stdout] test parser::nexus::test::test_check_match_ntax_panic - should panic ... ok [INFO] [stdout] test parser::nexus::test::test_nexus_space_panic - should panic ... ok [INFO] [stdout] test parser::partition::test::test_parse_partition_raxml_with_invalid_format - should panic ... ok [INFO] [stdout] test writer::sequences::test::test_matrix_int ... ok [INFO] [stdout] test parser::partition::test::test_parse_partition_raxml_inv_start - should panic ... ok [INFO] [stdout] test parser::partition::test::test_parse_partition_raxml_inv - should panic ... ok [INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip_panic - should panic ... ok [INFO] [stdout] test parser::phylip::test::test_read_phylip_invalid - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 107 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.20s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "b0584b2259d420619820257193550e442518dca9832d8ed4ec4b0c7e37b4370a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b0584b2259d420619820257193550e442518dca9832d8ed4ec4b0c7e37b4370a", kill_on_drop: false }` [INFO] [stdout] b0584b2259d420619820257193550e442518dca9832d8ed4ec4b0c7e37b4370a