[INFO] fetching crate rustynuc 0.3.0... [INFO] testing rustynuc-0.3.0 against 1.60.0 for beta-1.61-1 [INFO] extracting crate rustynuc 0.3.0 into /workspace/builds/worker-10/source [INFO] validating manifest of crates.io crate rustynuc 0.3.0 on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rustynuc 0.3.0 [INFO] finished tweaking crates.io crate rustynuc 0.3.0 [INFO] tweaked toml for crates.io crate rustynuc 0.3.0 written to /workspace/builds/worker-10/source/Cargo.toml [INFO] crate crates.io crate rustynuc 0.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded getset v0.0.9 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded assert_cmd v1.0.2 [INFO] [stderr] Downloaded predicates-tree v1.0.0 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded fishers_exact v1.0.1 [INFO] [stderr] Downloaded bio-types v0.7.0 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] [stderr] Downloaded predicates v1.0.5 [INFO] [stderr] Downloaded predicates-core v1.0.0 [INFO] [stderr] Downloaded bio v0.30.1 [INFO] [stderr] Downloaded hts-sys v1.10.3 [INFO] [stderr] Downloaded statrs v0.12.0 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded niffler v2.2.0 [INFO] [stderr] Downloaded rust-htslib v0.31.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f1d24b0210677ba38920f048278e5ae48cd2c3d426274b23888ebd867bf7e648 [INFO] running `Command { std: "docker" "start" "-a" "f1d24b0210677ba38920f048278e5ae48cd2c3d426274b23888ebd867bf7e648", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f1d24b0210677ba38920f048278e5ae48cd2c3d426274b23888ebd867bf7e648", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f1d24b0210677ba38920f048278e5ae48cd2c3d426274b23888ebd867bf7e648", kill_on_drop: false }` [INFO] [stdout] f1d24b0210677ba38920f048278e5ae48cd2c3d426274b23888ebd867bf7e648 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5fbd81c7731f213a541c20bbbb5c12d6dad83127f4fbef648e45d0c8570c40a9 [INFO] running `Command { std: "docker" "start" "-a" "5fbd81c7731f213a541c20bbbb5c12d6dad83127f4fbef648e45d0c8570c40a9", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling bio v0.30.1 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling fishers_exact v1.0.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling tinyvec v1.1.0 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.22 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling enum_primitive v0.1.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling unicode-normalization v0.1.16 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling url v2.2.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling snafu v0.6.10 [INFO] [stderr] Compiling thiserror v1.0.22 [INFO] [stderr] Compiling niffler v2.2.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hts-sys v1.10.3 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rust-htslib v0.31.0 [INFO] [stderr] Compiling csv v1.1.5 [INFO] [stderr] Compiling structopt v0.3.21 [INFO] [stderr] Compiling rustynuc v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 24.75s [INFO] running `Command { std: "docker" "inspect" "5fbd81c7731f213a541c20bbbb5c12d6dad83127f4fbef648e45d0c8570c40a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5fbd81c7731f213a541c20bbbb5c12d6dad83127f4fbef648e45d0c8570c40a9", kill_on_drop: false }` [INFO] [stdout] 5fbd81c7731f213a541c20bbbb5c12d6dad83127f4fbef648e45d0c8570c40a9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6f475492d6a4f1b7d6db426a828709b52727ed7bff030730486457f7822a6cac [INFO] running `Command { std: "docker" "start" "-a" "6f475492d6a4f1b7d6db426a828709b52727ed7bff030730486457f7822a6cac", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling serde_json v1.0.60 [INFO] [stderr] Compiling predicates-core v1.0.0 [INFO] [stderr] Compiling half v1.6.0 [INFO] [stderr] Compiling treeline v0.1.0 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling walkdir v2.3.1 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling float-cmp v0.8.0 [INFO] [stderr] Compiling plotters v0.2.15 [INFO] [stderr] Compiling predicates v1.0.5 [INFO] [stderr] Compiling predicates-tree v1.0.0 [INFO] [stderr] Compiling serde_cbor v0.11.1 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling cast v0.2.3 [INFO] [stderr] Compiling assert_cmd v1.0.2 [INFO] [stderr] Compiling criterion-plot v0.4.3 [INFO] [stderr] Compiling tinytemplate v1.1.0 [INFO] [stderr] Compiling criterion v0.3.3 [INFO] [stderr] Compiling rustynuc v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 12.58s [INFO] running `Command { std: "docker" "inspect" "6f475492d6a4f1b7d6db426a828709b52727ed7bff030730486457f7822a6cac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6f475492d6a4f1b7d6db426a828709b52727ed7bff030730486457f7822a6cac", kill_on_drop: false }` [INFO] [stdout] 6f475492d6a4f1b7d6db426a828709b52727ed7bff030730486457f7822a6cac [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] da37ca7b44aa5427d3b0aadb784a16716265ba9bf6d12767699186b469b42a7b [INFO] running `Command { std: "docker" "start" "-a" "da37ca7b44aa5427d3b0aadb784a16716265ba9bf6d12767699186b469b42a7b", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.30s [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustynuc-31305803843304d5) [INFO] [stdout] [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-d7c3a29d36b7ed13) [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 14 tests [INFO] [stdout] test cli_no_args ... ok [INFO] [stdout] test cli_no_such_file ... ok [INFO] [stdout] test cli_oxog_bcf_skip_fishers ... ok [INFO] [stdout] test cli_oxog_bcf ... ok [INFO] [stdout] test cli_warn_about_mnp ... ok [INFO] [stdout] test cli_dont_warn_as_no_mnp ... ok [INFO] [stdout] test cli_not_oxog_as_above_either_pass ... ok [INFO] [stdout] test cli_not_false_positive_oxog_one_freq_above_af_either_pass ... ok [INFO] [stdout] test cli_not_false_positive_as_they_pass_either_above_af ... ok [INFO] [stdout] test cli_false_positive_oxog_as_not_above_either_or_both ... ok [INFO] [stdout] test cli_print_all ... ok [INFO] [stdout] test cli_oxog_bam ... ok [INFO] [stdout] test cli_af_not_above_one ... ok [INFO] [stdout] test cli_normal_bam ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.76s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "da37ca7b44aa5427d3b0aadb784a16716265ba9bf6d12767699186b469b42a7b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "da37ca7b44aa5427d3b0aadb784a16716265ba9bf6d12767699186b469b42a7b", kill_on_drop: false }` [INFO] [stdout] da37ca7b44aa5427d3b0aadb784a16716265ba9bf6d12767699186b469b42a7b