[INFO] fetching crate rust-htslib 0.38.2... [INFO] testing rust-htslib-0.38.2 against 1.60.0 for beta-1.61-1 [INFO] extracting crate rust-htslib 0.38.2 into /workspace/builds/worker-88/source [INFO] validating manifest of crates.io crate rust-htslib 0.38.2 on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-88/source/.cargo/config [INFO] started tweaking crates.io crate rust-htslib 0.38.2 [INFO] finished tweaking crates.io crate rust-htslib 0.38.2 [INFO] tweaked toml for crates.io crate rust-htslib 0.38.2 written to /workspace/builds/worker-88/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded libdeflate-sys v0.5.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded bio-types v0.12.1 [INFO] [stderr] Downloaded hts-sys v2.0.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 40b1892ecb6dd1bb754b48825410795eb9dfbb5760a659c081d607a7465d50a5 [INFO] running `Command { std: "docker" "start" "-a" "40b1892ecb6dd1bb754b48825410795eb9dfbb5760a659c081d607a7465d50a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "40b1892ecb6dd1bb754b48825410795eb9dfbb5760a659c081d607a7465d50a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "40b1892ecb6dd1bb754b48825410795eb9dfbb5760a659c081d607a7465d50a5", kill_on_drop: false }` [INFO] [stdout] 40b1892ecb6dd1bb754b48825410795eb9dfbb5760a659c081d607a7465d50a5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bfe0f5d97f17fd1487839ac302f114c3f207edbb57cbdc27acb00e9c6ee7e4ba [INFO] running `Command { std: "docker" "start" "-a" "bfe0f5d97f17fd1487839ac302f114c3f207edbb57cbdc27acb00e9c6ee7e4ba", kill_on_drop: false }` [INFO] [stderr] Compiling pkg-config v0.3.25 [INFO] [stderr] Compiling syn v1.0.91 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rustversion v1.0.6 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling tinyvec_macros v0.1.0 [INFO] [stderr] Compiling unicode-segmentation v1.9.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling matches v0.1.9 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling unicode-bidi v0.3.7 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling jobserver v0.1.24 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling tinyvec v1.5.1 [INFO] [stderr] Compiling form_urlencoded v1.0.1 [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling openssl-src v111.18.0+1.1.1n [INFO] [stderr] Compiling cmake v0.1.48 [INFO] [stderr] Compiling unicode-normalization v0.1.19 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling libz-sys v1.1.5 [INFO] [stderr] Compiling openssl-sys v0.9.72 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling curl-sys v0.4.53+curl-7.82.0 [INFO] [stderr] Compiling hts-sys v2.0.2 [INFO] [stderr] Compiling idna v0.2.3 [INFO] [stderr] Compiling url v2.2.2 [INFO] [stderr] Compiling regex v1.5.5 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling bio-types v0.12.1 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `hts_format` [INFO] [stdout] --> src/tbx/mod.rs:94:5 [INFO] [stdout] | [INFO] [stdout] 94 | hts_format: htslib::htsExactFormat, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Reader` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/tbx/mod.rs:86:10 [INFO] [stdout] | [INFO] [stdout] 86 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `buffer` [INFO] [stdout] --> src/bcf/record.rs:133:5 [INFO] [stdout] | [INFO] [stdout] 133 | buffer: B, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `BufferBacked` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/bcf/record.rs:130:15 [INFO] [stdout] | [INFO] [stdout] 130 | #[derive(new, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 13s [INFO] running `Command { std: "docker" "inspect" "bfe0f5d97f17fd1487839ac302f114c3f207edbb57cbdc27acb00e9c6ee7e4ba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bfe0f5d97f17fd1487839ac302f114c3f207edbb57cbdc27acb00e9c6ee7e4ba", kill_on_drop: false }` [INFO] [stdout] bfe0f5d97f17fd1487839ac302f114c3f207edbb57cbdc27acb00e9c6ee7e4ba [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2787ec9b8b98ea0d058e70a65d0d7f85e071dcb69dcaf4258a7ef6ae2b2ce62e [INFO] running `Command { std: "docker" "start" "-a" "2787ec9b8b98ea0d058e70a65d0d7f85e071dcb69dcaf4258a7ef6ae2b2ce62e", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling fastrand v1.7.0 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stdout] warning: field is never read: `hts_format` [INFO] [stdout] --> src/tbx/mod.rs:94:5 [INFO] [stdout] | [INFO] [stdout] 94 | hts_format: htslib::htsExactFormat, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Reader` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/tbx/mod.rs:86:10 [INFO] [stdout] | [INFO] [stdout] 86 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `buffer` [INFO] [stdout] --> src/bcf/record.rs:133:5 [INFO] [stdout] | [INFO] [stdout] 133 | buffer: B, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `BufferBacked` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/bcf/record.rs:130:15 [INFO] [stdout] | [INFO] [stdout] 130 | #[derive(new, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling pretty_assertions v0.6.1 [INFO] [stderr] Compiling tempfile v3.3.0 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `hts_format` [INFO] [stdout] --> src/tbx/mod.rs:94:5 [INFO] [stdout] | [INFO] [stdout] 94 | hts_format: htslib::htsExactFormat, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Reader` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/tbx/mod.rs:86:10 [INFO] [stdout] | [INFO] [stdout] 86 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `buffer` [INFO] [stdout] --> src/bcf/record.rs:133:5 [INFO] [stdout] | [INFO] [stdout] 133 | buffer: B, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] note: `BufferBacked` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/bcf/record.rs:130:15 [INFO] [stdout] | [INFO] [stdout] 130 | #[derive(new, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 24.45s [INFO] running `Command { std: "docker" "inspect" "2787ec9b8b98ea0d058e70a65d0d7f85e071dcb69dcaf4258a7ef6ae2b2ce62e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2787ec9b8b98ea0d058e70a65d0d7f85e071dcb69dcaf4258a7ef6ae2b2ce62e", kill_on_drop: false }` [INFO] [stdout] 2787ec9b8b98ea0d058e70a65d0d7f85e071dcb69dcaf4258a7ef6ae2b2ce62e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-88/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] f8e037e7da570d3bb1711daafdad9e535a79f35bf78139b6ab041a4b52a292ab [INFO] running `Command { std: "docker" "start" "-a" "f8e037e7da570d3bb1711daafdad9e535a79f35bf78139b6ab041a4b52a292ab", kill_on_drop: false }` [INFO] [stderr] warning: field is never read: `hts_format` [INFO] [stderr] --> src/tbx/mod.rs:94:5 [INFO] [stderr] | [INFO] [stderr] 94 | hts_format: htslib::htsExactFormat, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] note: `Reader` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] --> src/tbx/mod.rs:86:10 [INFO] [stderr] | [INFO] [stderr] 86 | #[derive(Debug)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: field is never read: `buffer` [INFO] [stderr] --> src/bcf/record.rs:133:5 [INFO] [stderr] | [INFO] [stderr] 133 | buffer: B, [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] note: `BufferBacked` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] --> src/bcf/record.rs:130:15 [INFO] [stderr] | [INFO] [stderr] 130 | #[derive(new, Debug)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `rust-htslib` (lib) generated 2 warnings [INFO] [stderr] warning: `rust-htslib` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.24s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rust_htslib-b635b84458bc78d2) [INFO] [stdout] [INFO] [stdout] running 118 tests [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stderr] [E::hts_open_format] Failed to open file "./test/bam2sam_out.sam" : Read-only file system [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stderr] [W::vcf_parse] Contig '19' is not defined in the header. (Quick workaround: index the file with tabix.) [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test_left.vcf' [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test.bam' [INFO] [stdout] test bam::ext::tests::spliced_reads ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_block_pairs ... ok [INFO] [stdout] test bam::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::ext::tests::test_get_cigar_stats ... ok [INFO] [stdout] test bam::ext::tests::test_infer_seq_len ... ok [INFO] [stdout] test bam::ext::tests::test_introns ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar ... ok [INFO] [stdout] test bam::record::tests::test_cigar_parse ... ok [INFO] [stdout] test bam::tests::test_cigar_modes ... ok [INFO] [stdout] test bam::tests::test_indexde_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_read_against_sam ... ok [INFO] [stdout] test bam::tests::test_pileup ... ok [INFO] [stdout] test bam::tests::test_aux_array_partial_eq ... ok [INFO] [stdout] test bam::tests::test_aux_arrays ... ok [INFO] [stdout] test bam::tests::test_bam_header_sync ... ok [INFO] [stderr] [E::hts_idx_load3] Could not load local index file 'test/tabix_reader/bad_header.txt.gz.tbi' [INFO] [stdout] test bam::tests::test_bam_fails_on_toml ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_aux_scalars ... ok [INFO] [stdout] test bam::record::tests::test_flags ... ok [INFO] [stdout] test bam::record::tests::test_clone ... ok [INFO] [stdout] test bam::record::tests::test_cigar_string ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_read_orientation_f1r2 ... ok [INFO] [stdout] test bam::tests::test_rc_records ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing ... ok [INFO] [stdout] test bam::record::tests::test_cigar_read_pos ... ok [INFO] [stdout] test bam::tests::test_copy_template ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing_non_ascii_error ... ok [INFO] [stdout] test bam::tests::test_compression_level_conversion ... ok [INFO] [stdout] test bam::tests::test_read_indexed_different_index_name ... ok [INFO] [stdout] test bam::tests::test_read_sam_header ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions_full ... ok [INFO] [stdout] test bam::tests::parse_from_sam ... ok [INFO] [stdout] test bam::tests::test_set_repeated ... ok [INFO] [stdout] test bam::tests::test_set_qname2 ... ok [INFO] [stdout] test bam::tests::test_read_indexed ... ok [INFO] [stdout] test bam::tests::test_set_record ... ok [INFO] [stdout] test bcf::record::tests::test_missing_float ... ok [INFO] [stdout] test bam::tests::test_set_qname ... ok [INFO] [stdout] test bam::tests::test_write_cram ... ok [INFO] [stdout] test bam::ext::tests::test_reference_start_end ... ok [INFO] [stdout] test bcf::record::tests::test_vector_end_float ... ok [INFO] [stdout] test bcf::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bam::tests::test_remove_aux ... ok [INFO] [stdout] test bcf::tests::test_genotype_allele_conversion ... ok [INFO] [stdout] test bcf::tests::test_strings ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_end ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_start ... ok [INFO] [stdout] test bcf::tests::test_alt_allele_dosage ... ok [INFO] [stdout] test bcf::tests::test_genotype_missing_allele_conversion ... ok [INFO] [stdout] test bam::tests::test_seek ... ok [INFO] [stdout] test bgzf::tests::test_is_bgzip_plain ... ok [INFO] [stdout] test bcf::tests::test_synced_reader ... ok [INFO] [stdout] test bgzf::tests::test_open_plain ... ok [INFO] [stdout] test tbx::tests::bed_basic ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_iterator_api ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_read_api ... ok [INFO] [stdout] test bcf::record::tests::test_record_push_filter ... ok [INFO] [stdout] test bcf::record::tests::test_record_clear ... ok [INFO] [stdout] test bcf::record::tests::test_record_has_filter_custom ... ok [INFO] [stdout] test bcf::record::tests::test_record_end ... ok [INFO] [stdout] test faidx::tests::faidx_position_too_large ... ok [INFO] [stdout] test bam::tests::test_read ... ok [INFO] [stdout] test bam::tests::test_write_compression ... ok [INFO] [stdout] test bcf::record::tests::test_record_rlen ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_first_base ... ok [INFO] [stdout] test faidx::tests::faidx_read_twice_bytes ... ok [INFO] [stdout] test bcf::tests::test_write ... ok [INFO] [stdout] test bgzf::tests::test_open_bgzip ... ok [INFO] [stdout] test bcf::tests::test_write_various ... ok [INFO] [stdout] test bcf::record::tests::test_record_has_filter_pass_is_default ... ok [INFO] [stdout] test bgzf::tests::test_open_gzip ... ok [INFO] [stdout] test bcf::tests::test_synced_reader_fetch ... ok [INFO] [stdout] test bcf::tests::test_header_ids ... ok [INFO] [stdout] test bcf::tests::test_missing ... ok [INFO] [stdout] test bcf::buffer::tests::test_buffer ... ok [INFO] [stdout] test bgzf::tests::test_set_threadpool ... ok [INFO] [stdout] test bcf::record::tests::test_record_set_filters ... ok [INFO] [stdout] test tbx::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bcf::tests::test_svlen ... ok [INFO] [stdout] test tbx::tests::test_fails_on_vcf ... ok [INFO] [stdout] test bcf::tests::test_header_samples ... ok [INFO] [stdout] test bcf::tests::test_genotypes ... ok [INFO] [stdout] test bcf::record::tests::test_record_remove_filter ... ok [INFO] [stdout] test bcf::tests::test_fetch ... ok [INFO] [stdout] test bcf::tests::test_header_records ... ok [INFO] [stdout] test tbx::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::tests::test_obs_cornercase ... ok [INFO] [stdout] test bcf::tests::test_writer_set_threads ... ok [INFO] [stdout] test bcf::tests::test_fetch_all ... ok [INFO] [stdout] test bcf::tests::test_header_contigs ... ok [INFO] [stdout] test bcf::tests::test_remove_headers ... ok [INFO] [stdout] test tbx::tests::test_text_bad_header ... ok [INFO] [stdout] test bcf::tests::test_remove_alleles ... ok [INFO] [stdout] test bcf::tests::test_reader_set_threads ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs_full ... ok [INFO] [stdout] test faidx::tests::faidx_open ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag_number_a ... ok [INFO] [stdout] test tbx::tests::test_text_header_regions ... ok [INFO] [stdout] test bcf::tests::test_read ... ok [INFO] [stdout] test faidx::tests::faidx_read_twice_string ... ok [INFO] [stdout] test tbx::tests::test_text_header_positions ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_between ... ok [INFO] [stdout] test bcf::tests::test_fetch_start_greater_than_last_vcf_pos ... ok [INFO] [stdout] test bcf::tests::test_fetch_open_ended ... ok [INFO] [stdout] test bam::tests::test_read_cram ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions ... ok [INFO] [stdout] test bam::tests::test_write ... ok [INFO] [stdout] test bcf::tests::test_header_info_types ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag ... ok [INFO] [stdout] test bam::tests::test_idx_pileup ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup_to_high - should panic ... ok [INFO] [stdout] test bam::index::tests::test_index_build ... FAILED [INFO] [stdout] test bam::tests::test_sam_writer_example ... FAILED [INFO] [stdout] test bam::tests::test_write_threaded ... ok [INFO] [stdout] test bam::tests::test_write_shared_tpool ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- bam::index::tests::test_index_build stdout ---- [INFO] [stdout] thread 'bam::index::tests::test_index_build' panicked at 'called `Result::unwrap()` on an `Err` value: BamWriteIndex', src/bam/index.rs:72:51 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5590646f380d - std::backtrace_rs::backtrace::libunwind::trace::hee598835bc88d35b [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x5590646f380d - std::backtrace_rs::backtrace::trace_unsynchronized::h9cdc730ba5cf5d72 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5590646f380d - std::sys_common::backtrace::_print_fmt::h75aeaf7ed30e43fa [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stdout] 3: 0x5590646f380d - ::fmt::h606862f787600875 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stdout] 4: 0x55906471a69c - core::fmt::write::he803f0f418caf762 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/fmt/mod.rs:1190:17 [INFO] [stdout] 5: 0x5590646eea68 - std::io::Write::write_fmt::hbe7c1a63616291e2 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/io/mod.rs:1657:15 [INFO] [stdout] 6: 0x5590646f5ae7 - std::sys_common::backtrace::_print::h64d038cf8ac3e13e [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stdout] 7: 0x5590646f5ae7 - std::sys_common::backtrace::print::h359300b4a7fccf65 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stdout] 8: 0x5590646f5ae7 - std::panicking::default_hook::{{closure}}::hf51be35e2f510149 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:295:22 [INFO] [stdout] 9: 0x5590646f581c - std::panicking::default_hook::h03ca0f22e1d2d25e [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:311:9 [INFO] [stdout] 10: 0x5590646f6239 - std::panicking::rust_panic_with_hook::h3b7380e99b825b63 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:698:17 [INFO] [stdout] 11: 0x5590646f5f27 - std::panicking::begin_panic_handler::{{closure}}::h8e849d0710154ce0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:588:13 [INFO] [stdout] 12: 0x5590646f3cd4 - std::sys_common::backtrace::__rust_end_short_backtrace::hedcdaddbd4c46cc5 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stdout] 13: 0x5590646f5c39 - rust_begin_unwind [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:584:5 [INFO] [stdout] 14: 0x559064017603 - core::panicking::panic_fmt::he1bbc7336d49a357 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:143:14 [INFO] [stdout] 15: 0x5590640176f3 - core::result::unwrap_failed::h719f957ed74f93fd [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/result.rs:1749:5 [INFO] [stdout] 16: 0x55906419f842 - core::result::Result::unwrap::h15a02f19c33148d1 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/result.rs:1065:23 [INFO] [stdout] 17: 0x5590640e61b4 - rust_htslib::bam::index::tests::test_index_build::hbc514aa5a5af9c81 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:72:9 [INFO] [stdout] 18: 0x5590640e60ea - rust_htslib::bam::index::tests::test_index_build::{{closure}}::h0de0239ff52d6f1f [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:67:5 [INFO] [stdout] 19: 0x5590640ff4be - core::ops::function::FnOnce::call_once::hc09de4fd9256d2a7 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x5590642096a3 - core::ops::function::FnOnce::call_once::h2a47b4b927cb6ca5 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x5590642096a3 - test::__rust_begin_short_backtrace::h594ef8055a183b9b [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:575:5 [INFO] [stdout] 22: 0x559064208384 - as core::ops::function::FnOnce>::call_once::hb40cbb8bc3e1be15 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 23: 0x559064208384 - as core::ops::function::FnOnce<()>>::call_once::ha4f2bd3b806745a0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 24: 0x559064208384 - std::panicking::try::do_call::h92af9f8bc77a5987 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stdout] 25: 0x559064208384 - std::panicking::try::h9df49eeae42572b7 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stdout] 26: 0x559064208384 - std::panic::catch_unwind::h101dbadc82bbe0fd [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stdout] 27: 0x559064208384 - test::run_test_in_process::h2ad7bffb068e750a [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:598:18 [INFO] [stdout] 28: 0x559064208384 - test::run_test::run_test_inner::{{closure}}::h384faf46554c5acb [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:492:39 [INFO] [stdout] 29: 0x559064211ca1 - test::run_test::run_test_inner::{{closure}}::h17cfe94835a46685 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:519:37 [INFO] [stdout] 30: 0x559064211ca1 - std::sys_common::backtrace::__rust_begin_short_backtrace::h82709e5086312627 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stdout] 31: 0x5590641de31f - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hdfea66a201b39571 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/thread/mod.rs:498:17 [INFO] [stdout] 32: 0x5590641de31f - as core::ops::function::FnOnce<()>>::call_once::h4912df03598e67fa [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 33: 0x5590641de31f - std::panicking::try::do_call::h6d5dc1045d0eade8 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stdout] 34: 0x5590641de31f - std::panicking::try::hbc897fc717ec6571 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stdout] 35: 0x5590641de31f - std::panic::catch_unwind::h27f1e958c91391ad [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stdout] 36: 0x5590641de31f - std::thread::Builder::spawn_unchecked_::{{closure}}::h1b42e48537edc3c0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/thread/mod.rs:497:30 [INFO] [stdout] 37: 0x5590641de31f - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9137b3d6d2a88354 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 38: 0x5590646fcad3 - as core::ops::function::FnOnce>::call_once::hf70ac038171e3e1a [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 39: 0x5590646fcad3 - as core::ops::function::FnOnce>::call_once::he6690128792365ad [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 40: 0x5590646fcad3 - std::sys::unix::thread::Thread::new::thread_start::ha07928d93d5a5ec9 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 41: 0x7f87cd62e609 - start_thread [INFO] [stdout] 42: 0x7f87cd3fc163 - clone [INFO] [stdout] 43: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_sam_writer_example stdout ---- [INFO] [stdout] thread 'bam::tests::test_sam_writer_example' panicked at 'called `Result::unwrap()` on an `Err` value: BamOpen { target: "./test/bam2sam_out.sam" }', src/bam/mod.rs:2272:83 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5590646f380d - std::backtrace_rs::backtrace::libunwind::trace::hee598835bc88d35b [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x5590646f380d - std::backtrace_rs::backtrace::trace_unsynchronized::h9cdc730ba5cf5d72 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5590646f380d - std::sys_common::backtrace::_print_fmt::h75aeaf7ed30e43fa [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stdout] 3: 0x5590646f380d - ::fmt::h606862f787600875 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stdout] 4: 0x55906471a69c - core::fmt::write::he803f0f418caf762 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/fmt/mod.rs:1190:17 [INFO] [stdout] 5: 0x5590646eea68 - std::io::Write::write_fmt::hbe7c1a63616291e2 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/io/mod.rs:1657:15 [INFO] [stdout] 6: 0x5590646f5ae7 - std::sys_common::backtrace::_print::h64d038cf8ac3e13e [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stdout] 7: 0x5590646f5ae7 - std::sys_common::backtrace::print::h359300b4a7fccf65 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stdout] 8: 0x5590646f5ae7 - std::panicking::default_hook::{{closure}}::hf51be35e2f510149 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:295:22 [INFO] [stdout] 9: 0x5590646f581c - std::panicking::default_hook::h03ca0f22e1d2d25e [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:311:9 [INFO] [stdout] 10: 0x5590646f6239 - std::panicking::rust_panic_with_hook::h3b7380e99b825b63 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:698:17 [INFO] [stdout] 11: 0x5590646f5f27 - std::panicking::begin_panic_handler::{{closure}}::h8e849d0710154ce0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:588:13 [INFO] [stdout] 12: 0x5590646f3cd4 - std::sys_common::backtrace::__rust_end_short_backtrace::hedcdaddbd4c46cc5 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stdout] 13: 0x5590646f5c39 - rust_begin_unwind [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:584:5 [INFO] [stdout] 14: 0x559064017603 - core::panicking::panic_fmt::he1bbc7336d49a357 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:143:14 [INFO] [stdout] 15: 0x5590640176f3 - core::result::unwrap_failed::h719f957ed74f93fd [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/result.rs:1749:5 [INFO] [stdout] 16: 0x5590641a0d8e - core::result::Result::unwrap::had5a3da7271bcc5a [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/result.rs:1065:23 [INFO] [stdout] 17: 0x55906415f266 - rust_htslib::bam::tests::test_sam_writer_example::from_bam_with_filter::hc450d15a97424098 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2272:34 [INFO] [stdout] 18: 0x55906415ec45 - rust_htslib::bam::tests::test_sam_writer_example::h961fc3e420b1b23f [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2295:22 [INFO] [stdout] 19: 0x55906415ebba - rust_htslib::bam::tests::test_sam_writer_example::{{closure}}::h4a4b9f6cca7babbe [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2265:5 [INFO] [stdout] 20: 0x5590640fe0ee - core::ops::function::FnOnce::call_once::h38948f46ff2e7857 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x5590642096a3 - core::ops::function::FnOnce::call_once::h2a47b4b927cb6ca5 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x5590642096a3 - test::__rust_begin_short_backtrace::h594ef8055a183b9b [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:575:5 [INFO] [stdout] 23: 0x559064208384 - as core::ops::function::FnOnce>::call_once::hb40cbb8bc3e1be15 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 24: 0x559064208384 - as core::ops::function::FnOnce<()>>::call_once::ha4f2bd3b806745a0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x559064208384 - std::panicking::try::do_call::h92af9f8bc77a5987 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stdout] 26: 0x559064208384 - std::panicking::try::h9df49eeae42572b7 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stdout] 27: 0x559064208384 - std::panic::catch_unwind::h101dbadc82bbe0fd [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stdout] 28: 0x559064208384 - test::run_test_in_process::h2ad7bffb068e750a [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:598:18 [INFO] [stdout] 29: 0x559064208384 - test::run_test::run_test_inner::{{closure}}::h384faf46554c5acb [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:492:39 [INFO] [stdout] 30: 0x559064211ca1 - test::run_test::run_test_inner::{{closure}}::h17cfe94835a46685 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:519:37 [INFO] [stdout] 31: 0x559064211ca1 - std::sys_common::backtrace::__rust_begin_short_backtrace::h82709e5086312627 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stdout] 32: 0x5590641de31f - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hdfea66a201b39571 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/thread/mod.rs:498:17 [INFO] [stdout] 33: 0x5590641de31f - as core::ops::function::FnOnce<()>>::call_once::h4912df03598e67fa [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x5590641de31f - std::panicking::try::do_call::h6d5dc1045d0eade8 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stdout] 35: 0x5590641de31f - std::panicking::try::hbc897fc717ec6571 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stdout] 36: 0x5590641de31f - std::panic::catch_unwind::h27f1e958c91391ad [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stdout] 37: 0x5590641de31f - std::thread::Builder::spawn_unchecked_::{{closure}}::h1b42e48537edc3c0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/thread/mod.rs:497:30 [INFO] [stdout] 38: 0x5590641de31f - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9137b3d6d2a88354 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x5590646fcad3 - as core::ops::function::FnOnce>::call_once::hf70ac038171e3e1a [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 40: 0x5590646fcad3 - as core::ops::function::FnOnce>::call_once::he6690128792365ad [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 41: 0x5590646fcad3 - std::sys::unix::thread::Thread::new::thread_start::ha07928d93d5a5ec9 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 42: 0x7f87cd62e609 - start_thread [INFO] [stdout] 43: 0x7f87cd3fc163 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] bam::index::tests::test_index_build [INFO] [stdout] bam::tests::test_sam_writer_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 116 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.27s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "f8e037e7da570d3bb1711daafdad9e535a79f35bf78139b6ab041a4b52a292ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f8e037e7da570d3bb1711daafdad9e535a79f35bf78139b6ab041a4b52a292ab", kill_on_drop: false }` [INFO] [stdout] f8e037e7da570d3bb1711daafdad9e535a79f35bf78139b6ab041a4b52a292ab