[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against 1.60.0 for beta-1.61-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f51405e205d58fd8125d681e3b5119fa53f27685d91311597c3eb16f7d76c197 [INFO] running `Command { std: "docker" "start" "-a" "f51405e205d58fd8125d681e3b5119fa53f27685d91311597c3eb16f7d76c197", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f51405e205d58fd8125d681e3b5119fa53f27685d91311597c3eb16f7d76c197", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f51405e205d58fd8125d681e3b5119fa53f27685d91311597c3eb16f7d76c197", kill_on_drop: false }` [INFO] [stdout] f51405e205d58fd8125d681e3b5119fa53f27685d91311597c3eb16f7d76c197 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 98697063247c7ec18c9f460db36c12eda2f9b928d6f2d6413635ca1a1f51f852 [INFO] running `Command { std: "docker" "start" "-a" "98697063247c7ec18c9f460db36c12eda2f9b928d6f2d6413635ca1a1f51f852", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-ae2f826dd55a5390/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-7f8f29a43bf6dcf4/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-7f8f29a43bf6dcf4/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5588c1aceb3d - std::backtrace_rs::backtrace::libunwind::trace::hee598835bc88d35b [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x5588c1aceb3d - std::backtrace_rs::backtrace::trace_unsynchronized::h9cdc730ba5cf5d72 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5588c1aceb3d - std::sys_common::backtrace::_print_fmt::h75aeaf7ed30e43fa [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x5588c1aceb3d - ::fmt::h606862f787600875 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x5588c1af18dc - core::fmt::write::he803f0f418caf762 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/fmt/mod.rs:1190:17 [INFO] [stderr] 5: 0x5588c1aca4b8 - std::io::Write::write_fmt::h70bc45872f37e7bb [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/io/mod.rs:1657:15 [INFO] [stderr] 6: 0x5588c1ad0d37 - std::sys_common::backtrace::_print::h64d038cf8ac3e13e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x5588c1ad0d37 - std::sys_common::backtrace::print::h359300b4a7fccf65 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x5588c1ad0d37 - std::panicking::default_hook::{{closure}}::hf51be35e2f510149 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x5588c1ad0a00 - std::panicking::default_hook::h03ca0f22e1d2d25e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x5588c1ad1489 - std::panicking::rust_panic_with_hook::h3b7380e99b825b63 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x5588c1ad1177 - std::panicking::begin_panic_handler::{{closure}}::h8e849d0710154ce0 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x5588c1acf004 - std::sys_common::backtrace::__rust_end_short_backtrace::hedcdaddbd4c46cc5 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x5588c1ad0e89 - rust_begin_unwind [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x5588c1a5d433 - core::panicking::panic_fmt::he1bbc7336d49a357 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x5588c1a6af3d - cmake::fail::h933af75bbf76598e [INFO] [stderr] 16: 0x5588c1a6a9aa - cmake::run::h2abd90c40b839b4b [INFO] [stderr] 17: 0x5588c1a66fe1 - cmake::Config::build::h3980c7d70aa42546 [INFO] [stderr] 18: 0x5588c1a6070a - build_script_build::main::h070bd1deaa28fa92 [INFO] [stderr] 19: 0x5588c1a61ae3 - core::ops::function::FnOnce::call_once::h8149727909bd6b44 [INFO] [stderr] 20: 0x5588c1a62009 - std::sys_common::backtrace::__rust_begin_short_backtrace::ha83c84e98e54655b [INFO] [stderr] 21: 0x5588c1a61a09 - std::rt::lang_start::{{closure}}::h345d9ba5a7fe63b9 [INFO] [stderr] 22: 0x5588c1ace221 - core::ops::function::impls:: for &F>::call_once::hb7014f43484a8b4e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x5588c1ace221 - std::panicking::try::do_call::h7bc9dc436daeb8c7 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stderr] 24: 0x5588c1ace221 - std::panicking::try::h653d68a27ff5f175 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stderr] 25: 0x5588c1ace221 - std::panic::catch_unwind::h9d739f9f59895e68 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x5588c1ace221 - std::rt::lang_start_internal::{{closure}}::hf006f2bc7ce22bbe [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x5588c1ace221 - std::panicking::try::do_call::hfb39d6df61a2e69f [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stderr] 28: 0x5588c1ace221 - std::panicking::try::h13e2d225134958ac [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stderr] 29: 0x5588c1ace221 - std::panic::catch_unwind::h3bd49b5a5dfb1a50 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x5588c1ace221 - std::rt::lang_start_internal::h2ba92edce36c035e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x5588c1a619f1 - std::rt::lang_start::h5912ae7c4a90c051 [INFO] [stderr] 32: 0x5588c1a61193 - main [INFO] [stderr] 33: 0x7ff0ebf6c0b3 - __libc_start_main [INFO] [stderr] 34: 0x5588c1a5dbbe - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "98697063247c7ec18c9f460db36c12eda2f9b928d6f2d6413635ca1a1f51f852", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "98697063247c7ec18c9f460db36c12eda2f9b928d6f2d6413635ca1a1f51f852", kill_on_drop: false }` [INFO] [stdout] 98697063247c7ec18c9f460db36c12eda2f9b928d6f2d6413635ca1a1f51f852