[INFO] fetching crate mudskipper 0.1.0...
[INFO] testing mudskipper-0.1.0 against 1.60.0 for beta-1.61-1
[INFO] extracting crate mudskipper 0.1.0 into /workspace/builds/worker-27/source
[INFO] validating manifest of crates.io crate mudskipper 0.1.0 on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate mudskipper 0.1.0
[INFO] finished tweaking crates.io crate mudskipper 0.1.0
[INFO] tweaked toml for crates.io crate mudskipper 0.1.0 written to /workspace/builds/worker-27/source/Cargo.toml
[INFO] crate crates.io crate mudskipper 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 64187fac6414514253bad2a67706b547e11c90755ddb45119cb7e6027a3f781d
[INFO] running `Command { std: "docker" "start" "-a" "64187fac6414514253bad2a67706b547e11c90755ddb45119cb7e6027a3f781d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "64187fac6414514253bad2a67706b547e11c90755ddb45119cb7e6027a3f781d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "64187fac6414514253bad2a67706b547e11c90755ddb45119cb7e6027a3f781d", kill_on_drop: false }`
[INFO] [stdout] 64187fac6414514253bad2a67706b547e11c90755ddb45119cb7e6027a3f781d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 99d35b159b0b2b9bdcbd6314e94fcc7cc6744917f7246901a9e0e9f00a130565
[INFO] running `Command { std: "docker" "start" "-a" "99d35b159b0b2b9bdcbd6314e94fcc7cc6744917f7246901a9e0e9f00a130565", kill_on_drop: false }`
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[INFO] [stderr]    Compiling rust-htslib v0.38.2
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[INFO] [stderr]    Compiling bio v0.39.1
[INFO] [stderr]    Compiling libradicl v0.4.1
[INFO] [stderr]    Compiling mudskipper v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 06s
[INFO] running `Command { std: "docker" "inspect" "99d35b159b0b2b9bdcbd6314e94fcc7cc6744917f7246901a9e0e9f00a130565", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "99d35b159b0b2b9bdcbd6314e94fcc7cc6744917f7246901a9e0e9f00a130565", kill_on_drop: false }`
[INFO] [stdout] 99d35b159b0b2b9bdcbd6314e94fcc7cc6744917f7246901a9e0e9f00a130565
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4cca6e9e8be9e79facc7f00ebb2a8093bacf3b9701be14c3c15a89df17e7b19f
[INFO] running `Command { std: "docker" "start" "-a" "4cca6e9e8be9e79facc7f00ebb2a8093bacf3b9701be14c3c15a89df17e7b19f", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling mudskipper v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0463]: can't find crate for `mudskipper`
[INFO] [stdout]  --> tests/bam_test.rs:6:1
[INFO] [stdout]   |
[INFO] [stdout] 6 | extern crate mudskipper;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^^^^^^^^ can't find crate
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0463]: can't find crate for `mudskipper`
[INFO] [stdout]  --> tests/annotations_test.rs:4:1
[INFO] [stdout]   |
[INFO] [stdout] 4 | extern crate mudskipper;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^^^^^^^^ can't find crate
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `annotation`
[INFO] [stdout]   --> tests/bam_test.rs:21:17
[INFO] [stdout]    |
[INFO] [stdout] 21 |     let trees = annotation::build_tree(ann_file_adr, 
[INFO] [stdout]    |                 ^^^^^^^^^^ use of undeclared crate or module `annotation`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bam`
[INFO] [stdout]   --> tests/bam_test.rs:26:12
[INFO] [stdout]    |
[INFO] [stdout] 26 |     return bam::bam2bam(bam_file_in, bam_file_out, &transcripts, &txp_lengths, &trees, &threads, &200);
[INFO] [stdout]    |            ^^^ use of undeclared crate or module `bam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 3 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0433, E0463.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `mudskipper` due to 4 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `annotation`
[INFO] [stdout]   --> tests/annotations_test.rs:12:18
[INFO] [stdout]    |
[INFO] [stdout] 12 |     let reader = annotation::read(&ann_file_adr);
[INFO] [stdout]    |                  ^^^^^^^^^^ use of undeclared crate or module `annotation`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `annotation`
[INFO] [stdout]   --> tests/annotations_test.rs:19:18
[INFO] [stdout]    |
[INFO] [stdout] 19 |     let reader = annotation::read(&ann_file_adr);
[INFO] [stdout]    |                  ^^^^^^^^^^ use of undeclared crate or module `annotation`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `annotation`
[INFO] [stdout]   --> tests/annotations_test.rs:30:17
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let trees = annotation::build_tree(&ann_file_adr,
[INFO] [stdout]    |                 ^^^^^^^^^^ use of undeclared crate or module `annotation`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `annotation`
[INFO] [stdout]   --> tests/annotations_test.rs:36:18
[INFO] [stdout]    |
[INFO] [stdout] 36 |     let reader = annotation::read(&query_file_adr);
[INFO] [stdout]    |                  ^^^^^^^^^^ use of undeclared crate or module `annotation`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 5 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0433, E0463.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "4cca6e9e8be9e79facc7f00ebb2a8093bacf3b9701be14c3c15a89df17e7b19f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4cca6e9e8be9e79facc7f00ebb2a8093bacf3b9701be14c3c15a89df17e7b19f", kill_on_drop: false }`
[INFO] [stdout] 4cca6e9e8be9e79facc7f00ebb2a8093bacf3b9701be14c3c15a89df17e7b19f