[INFO] fetching crate bio_edit 0.1.1...
[INFO] testing bio_edit-0.1.1 against 1.60.0 for beta-1.61-1
[INFO] extracting crate bio_edit 0.1.1 into /workspace/builds/worker-8/source
[INFO] validating manifest of crates.io crate bio_edit 0.1.1 on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio_edit 0.1.1
[INFO] finished tweaking crates.io crate bio_edit 0.1.1
[INFO] tweaked toml for crates.io crate bio_edit 0.1.1 written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a8c7c80fdef971d9d025a1e7b07f37b3000a1f65ed7a1c10a60096a952ebf6c4
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[INFO] [stdout] a8c7c80fdef971d9d025a1e7b07f37b3000a1f65ed7a1c10a60096a952ebf6c4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 13dbc3116fc44cf40be9fae55f0c74e6791d5b97e04aede4a73f736698b6ad4e
[INFO] running `Command { std: "docker" "start" "-a" "13dbc3116fc44cf40be9fae55f0c74e6791d5b97e04aede4a73f736698b6ad4e", kill_on_drop: false }`
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling bio-types v0.12.1
[INFO] [stderr]    Compiling bio_edit v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3.01s
[INFO] running `Command { std: "docker" "inspect" "13dbc3116fc44cf40be9fae55f0c74e6791d5b97e04aede4a73f736698b6ad4e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "13dbc3116fc44cf40be9fae55f0c74e6791d5b97e04aede4a73f736698b6ad4e", kill_on_drop: false }`
[INFO] [stdout] 13dbc3116fc44cf40be9fae55f0c74e6791d5b97e04aede4a73f736698b6ad4e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c06c1714652872ab8359e56a0009606b3e4192600bc38ca666ced92416e11cf5
[INFO] running `Command { std: "docker" "start" "-a" "c06c1714652872ab8359e56a0009606b3e4192600bc38ca666ced92416e11cf5", kill_on_drop: false }`
[INFO] [stderr]    Compiling bio_edit v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.75s
[INFO] running `Command { std: "docker" "inspect" "c06c1714652872ab8359e56a0009606b3e4192600bc38ca666ced92416e11cf5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c06c1714652872ab8359e56a0009606b3e4192600bc38ca666ced92416e11cf5", kill_on_drop: false }`
[INFO] [stdout] c06c1714652872ab8359e56a0009606b3e4192600bc38ca666ced92416e11cf5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 22d6857325b797a3aa64449a602d67793860da6bb06728f056aedd392c9a6180
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[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.02s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bio_edit-3a4de22a2ff9b6f5)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bio_edit
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Aligner (line 402) ... ignored
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Aligner (line 407) ... ignored
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Aligner (line 414) ... ignored
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip_suffix (line 323) ... FAILED
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip (line 281) ... FAILED
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip_suffix (line 384) ... FAILED
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip_prefix (line 303) ... FAILED
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip (line 343) ... FAILED
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip_prefix (line 364) ... FAILED
[INFO] [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip_suffix (line 323) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:324:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::{Scoring, MIN_SCORE};
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:325:15
[INFO] [stdout]     |
[INFO] [stdout] 4   |   let scoring = Scoring::from_scores(0, -2, 1, -2).xclip_suffix(-5);
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 4   | let scoring = String::from_scores(0, -2, 1, -2).xclip_suffix(-5);
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:326:33
[INFO] [stdout]   |
[INFO] [stdout] 5 | assert!(scoring.xclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:327:33
[INFO] [stdout]   |
[INFO] [stdout] 6 | assert!(scoring.yclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:329:33
[INFO] [stdout]   |
[INFO] [stdout] 8 | assert!(scoring.yclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 5 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip (line 281) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:282:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::{Scoring, MIN_SCORE};
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:283:15
[INFO] [stdout]     |
[INFO] [stdout] 4   |   let scoring = Scoring::from_scores(0, -2, 1, -2).xclip(-5);
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 4   | let scoring = String::from_scores(0, -2, 1, -2).xclip(-5);
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:285:33
[INFO] [stdout]   |
[INFO] [stdout] 6 | assert!(scoring.yclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:287:33
[INFO] [stdout]   |
[INFO] [stdout] 8 | assert!(scoring.yclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 4 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip_suffix (line 384) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:385:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::{Scoring, MIN_SCORE};
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:386:15
[INFO] [stdout]     |
[INFO] [stdout] 4   |   let scoring = Scoring::from_scores(0, -2, 1, -2).yclip_suffix(-5);
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 4   | let scoring = String::from_scores(0, -2, 1, -2).yclip_suffix(-5);
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:387:33
[INFO] [stdout]   |
[INFO] [stdout] 5 | assert!(scoring.xclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:388:33
[INFO] [stdout]   |
[INFO] [stdout] 6 | assert!(scoring.yclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:389:33
[INFO] [stdout]   |
[INFO] [stdout] 7 | assert!(scoring.xclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 5 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip_prefix (line 303) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:304:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::{Scoring, MIN_SCORE};
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:305:15
[INFO] [stdout]     |
[INFO] [stdout] 4   |   let scoring = Scoring::from_scores(0, -2, 1, -2).xclip_prefix(-5);
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 4   | let scoring = String::from_scores(0, -2, 1, -2).xclip_prefix(-5);
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:307:33
[INFO] [stdout]   |
[INFO] [stdout] 6 | assert!(scoring.yclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:308:33
[INFO] [stdout]   |
[INFO] [stdout] 7 | assert!(scoring.xclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:309:33
[INFO] [stdout]   |
[INFO] [stdout] 8 | assert!(scoring.yclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 5 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip (line 343) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:344:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::{Scoring, MIN_SCORE};
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:345:15
[INFO] [stdout]     |
[INFO] [stdout] 4   |   let scoring = Scoring::from_scores(0, -2, 1, -2).yclip(-5);
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 4   | let scoring = String::from_scores(0, -2, 1, -2).yclip(-5);
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:346:33
[INFO] [stdout]   |
[INFO] [stdout] 5 | assert!(scoring.xclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:348:33
[INFO] [stdout]   |
[INFO] [stdout] 7 | assert!(scoring.xclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 4 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip_prefix (line 364) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:365:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::{Scoring, MIN_SCORE};
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:366:15
[INFO] [stdout]     |
[INFO] [stdout] 4   |   let scoring = Scoring::from_scores(0, -2, 1, -2).yclip_prefix(-5);
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 4   | let scoring = String::from_scores(0, -2, 1, -2).yclip_prefix(-5);
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:367:33
[INFO] [stdout]   |
[INFO] [stdout] 5 | assert!(scoring.xclip_prefix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:369:33
[INFO] [stdout]   |
[INFO] [stdout] 7 | assert!(scoring.xclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:370:33
[INFO] [stdout]   |
[INFO] [stdout] 8 | assert!(scoring.yclip_suffix == MIN_SCORE);
[INFO] [stdout]   |                                 ^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 5 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:14:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::*;
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `bio`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:15:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use bio::alignment::AlignmentOperation::*;
[INFO] [stdout]   |     ^^^ use of undeclared crate or module `bio`
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved imports `bio::alignment::pairwise::*`, `bio::alignment::AlignmentOperation::*`
[INFO] [stdout]  --> src/alignment/pairwise/mod.rs:14:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bio::alignment::pairwise::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 4 | use bio::alignment::AlignmentOperation::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Aligner`
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:21:19
[INFO] [stdout]    |
[INFO] [stdout] 10 | let mut aligner = Aligner::with_capacity(x.len(), y.len(), -5, -1, &score);
[INFO] [stdout]    |                   ^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::Aligner;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:6
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |      ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:13
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |             ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:20
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                    ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:27
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                           ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:34
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                  ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Subst` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:41
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Subst;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Subst;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:48
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:55
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                       ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:28:62
[INFO] [stdout]    |
[INFO] [stdout] 17 |     [Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                              ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Aligner`
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:34:19
[INFO] [stdout]    |
[INFO] [stdout] 23 | let mut aligner = Aligner::new(-5, -1, &score);
[INFO] [stdout]    |                   ^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::Aligner;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:49:15
[INFO] [stdout]     |
[INFO] [stdout] 38  |   let scoring = Scoring::new(-5, -1, &score) // Gap open, gap extend and match score function
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 38  | let scoring = String::new(-5, -1, &score) // Gap open, gap extend and match score function
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:50:12
[INFO] [stdout]    |
[INFO] [stdout] 39 |     .xclip(MIN_SCORE) // Clipping penalty for x set to 'negative infinity', hence global in x
[INFO] [stdout]    |            ^^^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Aligner`
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:52:19
[INFO] [stdout]    |
[INFO] [stdout] 41 | let mut aligner = Aligner::with_scoring(scoring);
[INFO] [stdout]    |                   ^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::Aligner;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function, tuple struct or tuple variant `Yclip` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:60:9
[INFO] [stdout]    |
[INFO] [stdout] 49 |         Yclip(4),
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Yclip;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Yclip;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:61:9
[INFO] [stdout]    |
[INFO] [stdout] 50 |         Match,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:62:9
[INFO] [stdout]    |
[INFO] [stdout] 51 |         Match,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:63:9
[INFO] [stdout]    |
[INFO] [stdout] 52 |         Match,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 53 |         Match,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:65:9
[INFO] [stdout]    |
[INFO] [stdout] 54 |         Match,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Subst` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:66:9
[INFO] [stdout]    |
[INFO] [stdout] 55 |         Subst,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Subst;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Subst;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:67:9
[INFO] [stdout]    |
[INFO] [stdout] 56 |         Match,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:68:9
[INFO] [stdout]    |
[INFO] [stdout] 57 |         Match,
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:69:9
[INFO] [stdout]    |
[INFO] [stdout] 58 |         Match
[INFO] [stdout]    |         ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Scoring`
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:75:15
[INFO] [stdout]     |
[INFO] [stdout] 64  |   let scoring = Scoring::from_scores(-5, -1, 1, -1) // Gap open, extend, match, mismatch score
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 64  | let scoring = String::from_scores(-5, -1, 1, -1) // Gap open, extend, match, mismatch score
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:76:12
[INFO] [stdout]    |
[INFO] [stdout] 65 |     .xclip(MIN_SCORE) // Clipping penalty for x set to 'negative infinity', hence global in x
[INFO] [stdout]    |            ^^^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:77:12
[INFO] [stdout]    |
[INFO] [stdout] 66 |     .yclip(MIN_SCORE); // Clipping penalty for y set to 'negative infinity', hence global in y
[INFO] [stdout]    |            ^^^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Aligner`
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:78:19
[INFO] [stdout]    |
[INFO] [stdout] 67 | let mut aligner = Aligner::with_scoring(scoring);
[INFO] [stdout]    |                   ^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::Aligner;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Del` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:6
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |      ^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Del` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:11
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |           ^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Del` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:16
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                ^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Del` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:21
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                     ^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Del;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:26
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                          ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:33
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                 ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:40
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                        ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:47
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                               ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:54
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                      ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Subst` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:61
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                             ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Subst;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Subst;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:68
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                                    ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:75
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                                           ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:85:82
[INFO] [stdout]    |
[INFO] [stdout] 74 |     [Del, Del, Del, Del, Match, Match, Match, Match, Match, Subst, Match, Match, Match]
[INFO] [stdout]    |                                                                                  ^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::panicking::AssertKind::Match;
[INFO] [stdout]    |
[INFO] [stdout] 2  | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]    |
[INFO] [stdout]      and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0422]: cannot find struct, variant or union type `Scoring` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:98:15
[INFO] [stdout]     |
[INFO] [stdout] 87  |   let scoring = Scoring {
[INFO] [stdout]     |                 ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]     |
[INFO] [stdout] 87  | let scoring = String {
[INFO] [stdout]     |               ~~~~~~
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::pairwise::Scoring;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `MIN_SCORE` in this scope
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:104:19
[INFO] [stdout]    |
[INFO] [stdout] 93 |     xclip_suffix: MIN_SCORE,
[INFO] [stdout]    |                   ^^^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this constant
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::MIN_SCORE;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Aligner`
[INFO] [stdout]   --> src/alignment/pairwise/mod.rs:110:19
[INFO] [stdout]    |
[INFO] [stdout] 99 | let mut aligner = Aligner::with_capacity_and_scoring(x.len(), y.len(), scoring);
[INFO] [stdout]    |                   ^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 2  | use bio_edit::alignment::pairwise::Aligner;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function, tuple struct or tuple variant `Yclip` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:117:9
[INFO] [stdout]     |
[INFO] [stdout] 106 |         Yclip(4),
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Yclip;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Yclip;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function, tuple struct or tuple variant `Xclip` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:118:9
[INFO] [stdout]     |
[INFO] [stdout] 107 |         Xclip(6),
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Xclip;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Xclip;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:119:9
[INFO] [stdout]     |
[INFO] [stdout] 108 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:120:9
[INFO] [stdout]     |
[INFO] [stdout] 109 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:121:9
[INFO] [stdout]     |
[INFO] [stdout] 110 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:122:9
[INFO] [stdout]     |
[INFO] [stdout] 111 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:123:9
[INFO] [stdout]     |
[INFO] [stdout] 112 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:124:9
[INFO] [stdout]     |
[INFO] [stdout] 113 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:125:9
[INFO] [stdout]     |
[INFO] [stdout] 114 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:126:9
[INFO] [stdout]     |
[INFO] [stdout] 115 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:127:9
[INFO] [stdout]     |
[INFO] [stdout] 116 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:128:9
[INFO] [stdout]     |
[INFO] [stdout] 117 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:129:9
[INFO] [stdout]     |
[INFO] [stdout] 118 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `Match` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:130:9
[INFO] [stdout]     |
[INFO] [stdout] 119 |         Match,
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::panicking::AssertKind::Match;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use core::str::pattern::SearchStep::Match;
[INFO] [stdout]     |
[INFO] [stdout]       and 1 other candidate
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function, tuple struct or tuple variant `Yclip` in this scope
[INFO] [stdout]    --> src/alignment/pairwise/mod.rs:131:9
[INFO] [stdout]     |
[INFO] [stdout] 120 |         Yclip(4)
[INFO] [stdout]     |         ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these items
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_edit::alignment::AlignmentOperation::Yclip;
[INFO] [stdout]     |
[INFO] [stdout] 2   | use bio_types::alignment::AlignmentOperation::Yclip;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 62 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0422, E0425, E0432, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0422`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/alignment/pairwise/mod.rs - alignment::pairwise (line 13)
[INFO] [stdout]     src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip (line 281)
[INFO] [stdout]     src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip_prefix (line 303)
[INFO] [stdout]     src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::xclip_suffix (line 323)
[INFO] [stdout]     src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip (line 343)
[INFO] [stdout]     src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip_prefix (line 364)
[INFO] [stdout]     src/alignment/pairwise/mod.rs - alignment::pairwise::Scoring<F>::yclip_suffix (line 384)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 7 failed; 3 ignored; 0 measured; 0 filtered out; finished in 0.14s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] running `Command { std: "docker" "inspect" "22d6857325b797a3aa64449a602d67793860da6bb06728f056aedd392c9a6180", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "22d6857325b797a3aa64449a602d67793860da6bb06728f056aedd392c9a6180", kill_on_drop: false }`
[INFO] [stdout] 22d6857325b797a3aa64449a602d67793860da6bb06728f056aedd392c9a6180