[INFO] cloning repository https://github.com/zaeleus/noodles-fpkm [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-fpkm" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-fpkm", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-fpkm'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ac8e247a9b65a13d7fe98acccf63a9e46752422d [INFO] testing zaeleus/noodles-fpkm against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-fpkm" "/workspace/builds/worker-55/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-55/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-fpkm on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-fpkm [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-fpkm [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-fpkm written to /workspace/builds/worker-55/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-fpkm already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/zaeleus/noodles.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded miniz_oxide_c_api v0.2.2 [INFO] [stderr] Downloaded atty v0.2.12 [INFO] [stderr] Downloaded bit-vec v0.6.1 [INFO] [stderr] Downloaded regex-automata v0.1.7 [INFO] [stderr] Downloaded bstr v0.2.2 [INFO] [stderr] Downloaded miniz_oxide v0.2.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4dd7ec5dfe81f21513532a9980b18e6c05c11639d74b4530f7928c145ac79504 [INFO] running `Command { std: "docker" "start" "-a" "4dd7ec5dfe81f21513532a9980b18e6c05c11639d74b4530f7928c145ac79504", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4dd7ec5dfe81f21513532a9980b18e6c05c11639d74b4530f7928c145ac79504", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4dd7ec5dfe81f21513532a9980b18e6c05c11639d74b4530f7928c145ac79504", kill_on_drop: false }` [INFO] [stdout] 4dd7ec5dfe81f21513532a9980b18e6c05c11639d74b4530f7928c145ac79504 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7686073885fd18950471d7039d5c9d762c83e78ef0975c366d8d38b66ccae32d [INFO] running `Command { std: "docker" "start" "-a" "7686073885fd18950471d7039d5c9d762c83e78ef0975c366d8d38b66ccae32d", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.60 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling lazy_static v1.3.0 [INFO] [stderr] Compiling cfg-if v0.1.9 [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling serde v1.0.94 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling ryu v1.0.0 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling ucd-util v0.1.3 [INFO] [stderr] Compiling regex v1.1.9 [INFO] [stderr] Compiling bitflags v1.1.0 [INFO] [stderr] Compiling utf8-ranges v1.0.3 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling bit-vec v0.6.1 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex-syntax v0.6.8 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling regex-automata v0.1.7 [INFO] [stderr] Compiling atty v0.2.12 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.7.4 [INFO] [stderr] Compiling bstr v0.2.2 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling flate2 v1.0.9 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git?rev=699e849407ff5b8f445926d08757531135d262a6#699e8494) [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 18s [INFO] running `Command { std: "docker" "inspect" "7686073885fd18950471d7039d5c9d762c83e78ef0975c366d8d38b66ccae32d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7686073885fd18950471d7039d5c9d762c83e78ef0975c366d8d38b66ccae32d", kill_on_drop: false }` [INFO] [stdout] 7686073885fd18950471d7039d5c9d762c83e78ef0975c366d8d38b66ccae32d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 74080d4f9096d66614a2a713a612c71cd162e55424766457ac1d86ccbf5c2dfc [INFO] running `Command { std: "docker" "start" "-a" "74080d4f9096d66614a2a713a612c71cd162e55424766457ac1d86ccbf5c2dfc", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling noodles-fpkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021 [INFO] [stdout] --> src/lib.rs:107:18 [INFO] [stdout] | [INFO] [stdout] 107 | features.into_iter().cloned().collect() [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(array_into_iter)]` on by default [INFO] [stdout] = warning: this changes meaning in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity [INFO] [stdout] | [INFO] [stdout] 107 | features.iter().cloned().collect() [INFO] [stdout] | ~~~~ [INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value [INFO] [stdout] | [INFO] [stdout] 107 | IntoIterator::into_iter(features).cloned().collect() [INFO] [stdout] | ++++++++++++++++++++++++ ~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.92s [INFO] running `Command { std: "docker" "inspect" "74080d4f9096d66614a2a713a612c71cd162e55424766457ac1d86ccbf5c2dfc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "74080d4f9096d66614a2a713a612c71cd162e55424766457ac1d86ccbf5c2dfc", kill_on_drop: false }` [INFO] [stdout] 74080d4f9096d66614a2a713a612c71cd162e55424766457ac1d86ccbf5c2dfc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 0594af225952973b7612c616727e93f9ecccb7f6b4266862fbac806fe9d4f70c [INFO] running `Command { std: "docker" "start" "-a" "0594af225952973b7612c616727e93f9ecccb7f6b4266862fbac806fe9d4f70c", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021 [INFO] [stderr] --> src/lib.rs:107:18 [INFO] [stderr] | [INFO] [stderr] 107 | features.into_iter().cloned().collect() [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this changes meaning in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity [INFO] [stderr] | [INFO] [stderr] 107 | features.iter().cloned().collect() [INFO] [stderr] | ~~~~ [INFO] [stderr] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value [INFO] [stderr] | [INFO] [stderr] 107 | IntoIterator::into_iter(features).cloned().collect() [INFO] [stderr] | ++++++++++++++++++++++++ ~ [INFO] [stderr] [INFO] [stderr] warning: `noodles-fpkm` (lib test) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.61s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_fpkm-9f6f3ec8016b9066) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test counts::tests::test_insert_count ... ok [INFO] [stdout] test counts::tests::test_parse_count ... ok [INFO] [stdout] test counts::tests::test_parse_name ... ok [INFO] [stdout] test tests::test_calculate_fpkm ... ok [INFO] [stdout] test counts::tests::test_read_counts_with_duplicate_identifiers ... ok [INFO] [stdout] test tests::test_calculate_fpkms ... ok [INFO] [stdout] test tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test tests::test_calculate_fpkms_is_ordered_by_feature_id ... ok [INFO] [stdout] test tests::test_calculate_tpm ... ok [INFO] [stdout] test tests::test_sum_nonoverlapping_interval_lengths ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_fpkm-3ab64854f7472029) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_write_expressions ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-fpkm [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test src/features.rs - features::Feature::len (line 23) ... ok [INFO] [stdout] test src/counts.rs - counts::sum_counts (line 109) ... ok [INFO] [stdout] test src/features.rs - features::merge_intervals (line 56) ... ok [INFO] [stdout] test src/counts.rs - counts::read_counts (line 28) ... ok [INFO] [stdout] test src/features.rs - features::read_features (line 103) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.19s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "0594af225952973b7612c616727e93f9ecccb7f6b4266862fbac806fe9d4f70c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0594af225952973b7612c616727e93f9ecccb7f6b4266862fbac806fe9d4f70c", kill_on_drop: false }` [INFO] [stdout] 0594af225952973b7612c616727e93f9ecccb7f6b4266862fbac806fe9d4f70c