[INFO] cloning repository https://github.com/wwood/mfqe [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wwood/mfqe" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwwood%2Fmfqe", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwwood%2Fmfqe'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 2bbc53bab828e1a97994497139369869d6f54913 [INFO] testing wwood/mfqe against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwwood%2Fmfqe" "/workspace/builds/worker-92/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-92/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/wwood/mfqe on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/wwood/mfqe [INFO] finished tweaking git repo https://github.com/wwood/mfqe [INFO] tweaked toml for git repo https://github.com/wwood/mfqe written to /workspace/builds/worker-92/source/Cargo.toml [INFO] crate git repo https://github.com/wwood/mfqe already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded seq_io v0.3.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7275df1396307d547d89808f8ff80f077f267315ea20a25d0f548b2ff5cf7c26 [INFO] running `Command { std: "docker" "start" "-a" "7275df1396307d547d89808f8ff80f077f267315ea20a25d0f548b2ff5cf7c26", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7275df1396307d547d89808f8ff80f077f267315ea20a25d0f548b2ff5cf7c26", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7275df1396307d547d89808f8ff80f077f267315ea20a25d0f548b2ff5cf7c26", kill_on_drop: false }` [INFO] [stdout] 7275df1396307d547d89808f8ff80f077f267315ea20a25d0f548b2ff5cf7c26 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b0a882249369df14c4d8e59170c06e5dee87b88c820833767340fa6c1a6eaa0e [INFO] running `Command { std: "docker" "start" "-a" "b0a882249369df14c4d8e59170c06e5dee87b88c820833767340fa6c1a6eaa0e", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.7 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libc v0.2.119 [INFO] [stderr] Compiling proc-macro2 v1.0.36 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling crossbeam-epoch v0.9.7 [INFO] [stderr] Compiling crossbeam-queue v0.3.4 [INFO] [stderr] Compiling syn v1.0.86 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling serde_derive v1.0.136 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling termcolor v1.1.3 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling textwrap v0.15.0 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.8.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.2 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling os_str_bytes v6.0.0 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling quote v1.0.15 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling clap v3.1.5 [INFO] [stderr] Compiling crossbeam v0.8.1 [INFO] [stderr] Compiling env_logger v0.9.0 [INFO] [stderr] Compiling seq_io v0.3.1 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 26.26s [INFO] running `Command { std: "docker" "inspect" "b0a882249369df14c4d8e59170c06e5dee87b88c820833767340fa6c1a6eaa0e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b0a882249369df14c4d8e59170c06e5dee87b88c820833767340fa6c1a6eaa0e", kill_on_drop: false }` [INFO] [stdout] b0a882249369df14c4d8e59170c06e5dee87b88c820833767340fa6c1a6eaa0e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d0b7bd621013d786cb24ca1d6cd90a06f6294bf8d3849be0919d5c86963d5661 [INFO] running `Command { std: "docker" "start" "-a" "d0b7bd621013d786cb24ca1d6cd90a06f6294bf8d3849be0919d5c86963d5661", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling gimli v0.26.1 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling rustc-demangle v0.1.21 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling serde_json v1.0.79 [INFO] [stderr] Compiling ryu v1.0.9 [INFO] [stderr] Compiling itoa v1.0.1 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling environment v0.1.1 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling object v0.27.1 [INFO] [stderr] Compiling colored v1.9.3 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Compiling backtrace v0.3.64 [INFO] [stderr] Compiling addr2line v0.17.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling assert_cli v0.6.3 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 26.67s [INFO] running `Command { std: "docker" "inspect" "d0b7bd621013d786cb24ca1d6cd90a06f6294bf8d3849be0919d5c86963d5661", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d0b7bd621013d786cb24ca1d6cd90a06f6294bf8d3849be0919d5c86963d5661", kill_on_drop: false }` [INFO] [stdout] d0b7bd621013d786cb24ca1d6cd90a06f6294bf8d3849be0919d5c86963d5661 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-92/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 95fc8903f8197329085521f0ee5b18263e43855896dc3beaeee19d7d9fb06f64 [INFO] running `Command { std: "docker" "start" "-a" "95fc8903f8197329085521f0ee5b18263e43855896dc3beaeee19d7d9fb06f64", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/mfqe-c4110590ef42dc51) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/test_cmdline.rs (/opt/rustwide/target/debug/deps/test_cmdline-339ec2f6495aa2ab) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test tests::test_fastq_by_file ... ok [INFO] [stdout] test tests::test_appending_no_gzip_two_files ... ok [INFO] [stdout] test tests::test_fasta_by_file ... ok [INFO] [stdout] test tests::test_fasta_sequence_prefix ... ok [INFO] [stdout] test tests::test_appending_not_already_existing ... ok [INFO] [stdout] test tests::test_define_sequence_names ... ok [INFO] [stdout] test tests::test_fastq_by_file_empty_lines_in_read_names ... ok [INFO] [stdout] test tests::test_fastq_by_stdin ... ok [INFO] [stdout] test tests::test_fasta_by_stdin ... ok [INFO] [stdout] test tests::test_appending_no_gzip ... ok [INFO] [stdout] test tests::test_appending_gzip ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.53s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "95fc8903f8197329085521f0ee5b18263e43855896dc3beaeee19d7d9fb06f64", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "95fc8903f8197329085521f0ee5b18263e43855896dc3beaeee19d7d9fb06f64", kill_on_drop: false }` [INFO] [stdout] 95fc8903f8197329085521f0ee5b18263e43855896dc3beaeee19d7d9fb06f64