[INFO] cloning repository https://github.com/ryanobeirne/cgats
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ryanobeirne/cgats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fryanobeirne%2Fcgats", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fryanobeirne%2Fcgats'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1aa6c30c8df9efb17841013de5793c89124d2ce8
[INFO] testing ryanobeirne/cgats against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fryanobeirne%2Fcgats" "/workspace/builds/worker-29/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-29/source'...
[INFO] [stderr] done.
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[INFO] validating manifest of git repo https://github.com/ryanobeirne/cgats on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/ryanobeirne/cgats
[INFO] removed 0 missing examples
[INFO] finished tweaking git repo https://github.com/ryanobeirne/cgats
[INFO] tweaked toml for git repo https://github.com/ryanobeirne/cgats written to /workspace/builds/worker-29/source/Cargo.toml
[INFO] crate git repo https://github.com/ryanobeirne/cgats already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_tools_util v0.2.0
[INFO] [stderr]   Downloaded num-complex v0.2.1
[INFO] [stderr]   Downloaded statistical v1.0.0
[INFO] [stderr]   Downloaded num v0.2.0
[INFO] [stderr]   Downloaded num-bigint v0.2.2
[INFO] [stderr]   Downloaded deltae v0.1.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 079b33ec43a266f695e2fc421e18d83ac4f1572f435a8172a6c27b97b88f0cb5
[INFO] running `Command { std: "docker" "start" "-a" "079b33ec43a266f695e2fc421e18d83ac4f1572f435a8172a6c27b97b88f0cb5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "079b33ec43a266f695e2fc421e18d83ac4f1572f435a8172a6c27b97b88f0cb5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "079b33ec43a266f695e2fc421e18d83ac4f1572f435a8172a6c27b97b88f0cb5", kill_on_drop: false }`
[INFO] [stdout] 079b33ec43a266f695e2fc421e18d83ac4f1572f435a8172a6c27b97b88f0cb5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fa1d770d3efab1cc12ada7075c965ed362df312dfa4d43b5b39567537f84acb2
[INFO] running `Command { std: "docker" "start" "-a" "fa1d770d3efab1cc12ada7075c965ed362df312dfa4d43b5b39567537f84acb2", kill_on_drop: false }`
[INFO] [stderr]    Compiling rand_core v0.4.0
[INFO] [stderr]    Compiling autocfg v0.1.2
[INFO] [stderr]    Compiling libc v0.2.53
[INFO] [stderr]    Compiling num-traits v0.2.6
[INFO] [stderr]    Compiling num-integer v0.1.39
[INFO] [stderr]    Compiling num-bigint v0.2.2
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling num-complex v0.2.1
[INFO] [stderr]    Compiling num-rational v0.2.1
[INFO] [stderr]    Compiling num-iter v0.1.37
[INFO] [stderr]    Compiling bitflags v1.0.4
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling rustc_tools_util v0.2.0
[INFO] [stderr]    Compiling deltae v0.1.5
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling rand_jitter v0.1.3
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling num v0.2.0
[INFO] [stderr]    Compiling statistical v1.0.0
[INFO] [stderr]    Compiling cgats v0.1.8-alpha.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: `#[macro_use]` only has an effect on `extern crate` and modules
[INFO] [stdout]  --> src/error.rs:7:1
[INFO] [stdout]   |
[INFO] [stdout] 7 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/error.rs:36:56
[INFO] [stdout]    |
[INFO] [stdout] 36 |         write!(f, "CgatsError::{:?}: {}", &self, &self.description())
[INFO] [stdout]    |                                                        ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `de_cgats`
[INFO] [stdout]  --> src/de_report.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 |     de_cgats:  Cgats,
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] note: `DeReport` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]  --> src/de_report.rs:7:10
[INFO] [stdout]   |
[INFO] [stdout] 7 | #[derive(Debug)]
[INFO] [stdout]   |          ^^^^^
[INFO] [stdout]   = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 34s
[INFO] running `Command { std: "docker" "inspect" "fa1d770d3efab1cc12ada7075c965ed362df312dfa4d43b5b39567537f84acb2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fa1d770d3efab1cc12ada7075c965ed362df312dfa4d43b5b39567537f84acb2", kill_on_drop: false }`
[INFO] [stdout] fa1d770d3efab1cc12ada7075c965ed362df312dfa4d43b5b39567537f84acb2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5e2be98093167d838a9be0c807dbc10625d901d5c51e58daecbc15433296b3ee
[INFO] running `Command { std: "docker" "start" "-a" "5e2be98093167d838a9be0c807dbc10625d901d5c51e58daecbc15433296b3ee", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling rustc-serialize v0.3.24
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stdout] warning: `#[macro_use]` only has an effect on `extern crate` and modules
[INFO] [stdout]  --> src/error.rs:7:1
[INFO] [stdout]   |
[INFO] [stdout] 7 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/error.rs:36:56
[INFO] [stdout]    |
[INFO] [stdout] 36 |         write!(f, "CgatsError::{:?}: {}", &self, &self.description())
[INFO] [stdout]    |                                                        ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `de_cgats`
[INFO] [stdout]  --> src/de_report.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 |     de_cgats:  Cgats,
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] note: `DeReport` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]  --> src/de_report.rs:7:10
[INFO] [stdout]   |
[INFO] [stdout] 7 | #[derive(Debug)]
[INFO] [stdout]   |          ^^^^^
[INFO] [stdout]   = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling uuid v0.1.18
[INFO] [stderr]    Compiling mktemp v0.3.1
[INFO] [stderr]    Compiling cgats v0.1.8-alpha.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: `#[macro_use]` only has an effect on `extern crate` and modules
[INFO] [stdout]  --> src/error.rs:7:1
[INFO] [stdout]   |
[INFO] [stdout] 7 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/error.rs:36:56
[INFO] [stdout]    |
[INFO] [stdout] 36 |         write!(f, "CgatsError::{:?}: {}", &self, &self.description())
[INFO] [stdout]    |                                                        ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `de_cgats`
[INFO] [stdout]  --> src/de_report.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 |     de_cgats:  Cgats,
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] note: `DeReport` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]  --> src/de_report.rs:7:10
[INFO] [stdout]   |
[INFO] [stdout] 7 | #[derive(Debug)]
[INFO] [stdout]   |          ^^^^^
[INFO] [stdout]   = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 6.20s
[INFO] running `Command { std: "docker" "inspect" "5e2be98093167d838a9be0c807dbc10625d901d5c51e58daecbc15433296b3ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e2be98093167d838a9be0c807dbc10625d901d5c51e58daecbc15433296b3ee", kill_on_drop: false }`
[INFO] [stdout] 5e2be98093167d838a9be0c807dbc10625d901d5c51e58daecbc15433296b3ee
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-29/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 1d6925aa01cbcd5932450c2e8bd3f6b6367a3cf71a09236a2448b445d641b069
[INFO] running `Command { std: "docker" "start" "-a" "1d6925aa01cbcd5932450c2e8bd3f6b6367a3cf71a09236a2448b445d641b069", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] warning: `#[macro_use]` only has an effect on `extern crate` and modules
[INFO] [stderr]  --> src/error.rs:7:1
[INFO] [stderr]   |
[INFO] [stderr] 7 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_attributes)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]   --> src/error.rs:36:56
[INFO] [stderr]    |
[INFO] [stderr] 36 |         write!(f, "CgatsError::{:?}: {}", &self, &self.description())
[INFO] [stderr]    |                                                        ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field is never read: `de_cgats`
[INFO] [stderr]  --> src/de_report.rs:9:5
[INFO] [stderr]   |
[INFO] [stderr] 9 |     de_cgats:  Cgats,
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] note: `DeReport` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr]  --> src/de_report.rs:7:10
[INFO] [stderr]   |
[INFO] [stderr] 7 | #[derive(Debug)]
[INFO] [stderr]   |          ^^^^^
[INFO] [stderr]   = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: `cgats` (lib) generated 3 warnings
[INFO] [stderr] warning: `cgats` (lib test) generated 3 warnings (3 duplicates)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.72s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/cgats-ce487000aa80f556)
[INFO] [stdout] running 15 tests
[INFO] [stdout] test cgats::write_data_map ... ok
[INFO] [stdout] test data_vec::from_file ... ok
[INFO] [stdout] test compare::average_cgats ... ok
[INFO] [stdout] test compare::cat_cgats ... ok
[INFO] [stdout] test vendor::from_str ... ok
[INFO] [stdout] test test::bad_files ... ok
[INFO] [stdout] test cgats::write_fields ... ok
[INFO] [stdout] test cgats::write_meta ... ok
[INFO] [stdout] test cgats::cgats_display ... ok
[INFO] [stdout] test de_report::de_report ... ok
[INFO] [stdout] test compare::reindex ... ok
[INFO] [stdout] test compare::deltae ... ok
[INFO] [stdout] test compare::average_cb ... ok
[INFO] [stdout] test test::good_files ... ok
[INFO] [stdout] test test::reconstruct ... ok
[INFO] [stderr]    Doc-tests cgats
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.07s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "1d6925aa01cbcd5932450c2e8bd3f6b6367a3cf71a09236a2448b445d641b069", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1d6925aa01cbcd5932450c2e8bd3f6b6367a3cf71a09236a2448b445d641b069", kill_on_drop: false }`
[INFO] [stdout] 1d6925aa01cbcd5932450c2e8bd3f6b6367a3cf71a09236a2448b445d641b069