[INFO] cloning repository https://github.com/robsyme/rustalind [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/robsyme/rustalind" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 264d21ca5f12caf9ce4156f1d721874a4cd24e12 [INFO] testing robsyme/rustalind against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/robsyme/rustalind on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/robsyme/rustalind [INFO] finished tweaking git repo https://github.com/robsyme/rustalind [INFO] tweaked toml for git repo https://github.com/robsyme/rustalind written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/robsyme/rustalind already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 010852ca10ce3eb4219fb06a474b96a89ca52b6024ae6562043bdb2ade6649d4 [INFO] running `Command { std: "docker" "start" "-a" "010852ca10ce3eb4219fb06a474b96a89ca52b6024ae6562043bdb2ade6649d4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "010852ca10ce3eb4219fb06a474b96a89ca52b6024ae6562043bdb2ade6649d4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "010852ca10ce3eb4219fb06a474b96a89ca52b6024ae6562043bdb2ade6649d4", kill_on_drop: false }` [INFO] [stdout] 010852ca10ce3eb4219fb06a474b96a89ca52b6024ae6562043bdb2ade6649d4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 731778a3a7d8e5a0e83d177ea03ad61f2dd9072ec553020fde4aea4d6cd87a0e [INFO] running `Command { std: "docker" "start" "-a" "731778a3a7d8e5a0e83d177ea03ad61f2dd9072ec553020fde4aea4d6cd87a0e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.49 [INFO] [stderr] Compiling bit-vec v0.5.0 [INFO] [stderr] Compiling bit-set v0.5.0 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/seq/nuc.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `prev` [INFO] [stdout] --> src/hamm.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | prev: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Pairer` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/hamm.rs:5:10 [INFO] [stdout] | [INFO] [stdout] 5 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 18.30s [INFO] running `Command { std: "docker" "inspect" "731778a3a7d8e5a0e83d177ea03ad61f2dd9072ec553020fde4aea4d6cd87a0e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "731778a3a7d8e5a0e83d177ea03ad61f2dd9072ec553020fde4aea4d6cd87a0e", kill_on_drop: false }` [INFO] [stdout] 731778a3a7d8e5a0e83d177ea03ad61f2dd9072ec553020fde4aea4d6cd87a0e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 63b49e28e760ddb16ba18dd4f299b9992412f7e686dd979be795d1265026cd1c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "63b49e28e760ddb16ba18dd4f299b9992412f7e686dd979be795d1265026cd1c", kill_on_drop: false }` [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/seq/nuc.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `prev` [INFO] [stdout] --> src/hamm.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | prev: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Pairer` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/hamm.rs:5:10 [INFO] [stdout] | [INFO] [stdout] 5 | #[derive(Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.36s [INFO] running `Command { std: "docker" "inspect" "63b49e28e760ddb16ba18dd4f299b9992412f7e686dd979be795d1265026cd1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "63b49e28e760ddb16ba18dd4f299b9992412f7e686dd979be795d1265026cd1c", kill_on_drop: false }` [INFO] [stdout] 63b49e28e760ddb16ba18dd4f299b9992412f7e686dd979be795d1265026cd1c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 462732bb55baefc805ef38d7f9f5bdae0472096ee6e05d68c2a415c34e2d47f6 [INFO] running `Command { std: "docker" "start" "-a" "462732bb55baefc805ef38d7f9f5bdae0472096ee6e05d68c2a415c34e2d47f6", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `std::convert::TryFrom` [INFO] [stderr] --> src/seq/nuc.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::convert::TryFrom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `rustalind` (lib) generated 1 warning [INFO] [stderr] warning: field is never read: `prev` [INFO] [stderr] --> src/hamm.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | prev: Option, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] note: `Pairer` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] --> src/hamm.rs:5:10 [INFO] [stderr] | [INFO] [stderr] 5 | #[derive(Debug)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `rustalind` (bin "rustalind" test) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustalind-91a7b9bb099409cd) [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test io::tests::erroneous_fasta ... ok [INFO] [stdout] test io::tests::blank_fasta ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_and ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_chars ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_or ... ok [INFO] [stdout] test seq::translation::tests::test_get ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_xor ... ok [INFO] [stdout] test seq::nuc::tests::dna_complement ... ok [INFO] [stdout] test seq::codon::tests::test_table_integration ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_string ... ok [INFO] [stdout] test io::tests::test_gc_counting ... ok [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustalind-4085c61b1da5dfe0) [INFO] [stdout] test seq::nuc::tests::dna_as_tagged_enums ... ok [INFO] [stderr] Doc-tests rustalind [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test rna::tests::test_translation ... ok [INFO] [stdout] test prot::tests::test_translate ... ok [INFO] [stdout] test revc::tests::test_reverse_complement ... ok [INFO] [stdout] test hamm::tests::basic_distance ... ok [INFO] [stdout] test fib::tests::test_basic_recurrence ... ok [INFO] [stdout] test dna::tests::count_basic_occurrences ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "462732bb55baefc805ef38d7f9f5bdae0472096ee6e05d68c2a415c34e2d47f6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "462732bb55baefc805ef38d7f9f5bdae0472096ee6e05d68c2a415c34e2d47f6", kill_on_drop: false }` [INFO] [stdout] 462732bb55baefc805ef38d7f9f5bdae0472096ee6e05d68c2a415c34e2d47f6