[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9ffaa3f97f0779495bdde2167ada8028d7e80ec4
[INFO] testing informationsea/sequencetoolkit against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-13/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-13/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-13/source/Cargo.toml
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded multimap v0.8.3
[INFO] [stderr]   Downloaded bio-types v0.12.1
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded xlsxwriter v0.3.5
[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded enum-map v0.6.6
[INFO] [stderr]   Downloaded snafu v0.6.10
[INFO] [stderr]   Downloaded bio v0.39.2
[INFO] [stderr]   Downloaded xz2 v0.1.6
[INFO] [stderr]   Downloaded bio v0.32.0
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded lz4 v1.23.2
[INFO] [stderr]   Downloaded snafu-derive v0.6.10
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded ndarray v0.15.4
[INFO] [stderr]   Downloaded lz4-sys v1.9.2
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.1
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded ndarray v0.13.1
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded matrixmultiply v0.2.4
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
[INFO] [stderr]   Downloaded ordered-float v1.1.1
[INFO] [stderr]   Downloaded cmake v0.1.48
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded rust-htslib v0.38.2
[INFO] [stderr]   Downloaded curl-sys v0.4.52+curl-7.81.0
[INFO] [stderr]   Downloaded brotli v3.3.3
[INFO] [stderr]   Downloaded hts-sys v2.0.2
[INFO] [stderr]   Downloaded autocompress v0.2.2
[INFO] [stderr]   Downloaded vcf v0.5.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] e07ed9d2bb7d4896ad303733996f3a0f3d4a626e48fb36c6feca258ea4562f31
[INFO] running `Command { std: "docker" "start" "-a" "e07ed9d2bb7d4896ad303733996f3a0f3d4a626e48fb36c6feca258ea4562f31", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e07ed9d2bb7d4896ad303733996f3a0f3d4a626e48fb36c6feca258ea4562f31", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e07ed9d2bb7d4896ad303733996f3a0f3d4a626e48fb36c6feca258ea4562f31", kill_on_drop: false }`
[INFO] [stdout] e07ed9d2bb7d4896ad303733996f3a0f3d4a626e48fb36c6feca258ea4562f31
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 5be14a9703bfbda5a2c2aecfe29f8c73987743c48b99b2e86d28651431976789
[INFO] running `Command { std: "docker" "start" "-a" "5be14a9703bfbda5a2c2aecfe29f8c73987743c48b99b2e86d28651431976789", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling anyhow v1.0.55
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling crossbeam-utils v0.8.7
[INFO] [stderr]    Compiling alloc-no-stdlib v2.0.3
[INFO] [stderr]    Compiling zstd-safe v4.1.3+zstd.1.5.1
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling bindgen v0.58.1
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling strum v0.23.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.8.0
[INFO] [stderr]    Compiling clang-sys v1.3.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling alloc-stdlib v0.2.1
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling brotli-decompressor v2.3.2
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling crossbeam-channel v0.5.2
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling serde_json v1.0.79
[INFO] [stderr]    Compiling pretty_env_logger v0.4.0
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling brotli v3.3.3
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling openssl-src v111.17.0+1.1.1m
[INFO] [stderr]    Compiling enum-map v0.6.6
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling petgraph v0.6.0
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling openssl-sys v0.9.72
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.52+curl-7.81.0
[INFO] [stderr]    Compiling zstd-sys v1.6.2+zstd.1.5.1
[INFO] [stderr]    Compiling backtrace v0.3.64
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling ndarray v0.15.4
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr] error: could not compile `brotli`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name brotli /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/brotli-3.3.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="default"' --cfg 'feature="ffi-api"' --cfg 'feature="std"' -C metadata=7a3ccdabb6584f63 -C extra-filename=-7a3ccdabb6584f63 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-aaf82af2c14e2ee8.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-1e547001fb4264c4.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-6ce2b49498661737.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "5be14a9703bfbda5a2c2aecfe29f8c73987743c48b99b2e86d28651431976789", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5be14a9703bfbda5a2c2aecfe29f8c73987743c48b99b2e86d28651431976789", kill_on_drop: false }`
[INFO] [stdout] 5be14a9703bfbda5a2c2aecfe29f8c73987743c48b99b2e86d28651431976789