[INFO] cloning repository https://github.com/hisakatha/extract-bam-unique-alignment [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hisakatha/extract-bam-unique-alignment" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ea8276edeeb0db722d2b36832a19d00841aa91bf [INFO] testing hisakatha/extract-bam-unique-alignment against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment" "/workspace/builds/worker-62/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-62/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/hisakatha/extract-bam-unique-alignment on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment [INFO] finished tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment [INFO] tweaked toml for git repo https://github.com/hisakatha/extract-bam-unique-alignment written to /workspace/builds/worker-62/source/Cargo.toml [INFO] crate git repo https://github.com/hisakatha/extract-bam-unique-alignment already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded unicode-normalization v0.1.17 [INFO] [stderr] Downloaded thiserror-impl v1.0.24 [INFO] [stderr] Downloaded thiserror v1.0.24 [INFO] [stderr] Downloaded unicode-bidi v0.3.5 [INFO] [stderr] Downloaded proc-macro2 v1.0.26 [INFO] [stderr] Downloaded heck v0.3.2 [INFO] [stderr] Downloaded libc v0.2.94 [INFO] [stderr] Downloaded openssl-sys v0.9.63 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded bio-types v0.11.0 [INFO] [stderr] Downloaded unicode-segmentation v1.7.1 [INFO] [stderr] Downloaded pkg-config v0.3.19 [INFO] [stderr] Downloaded memchr v2.4.0 [INFO] [stderr] Downloaded aho-corasick v0.7.18 [INFO] [stderr] Downloaded syn v1.0.72 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded vcpkg v0.2.12 [INFO] [stderr] Downloaded rust-htslib v0.36.0 [INFO] [stderr] Downloaded jobserver v0.1.22 [INFO] [stderr] Downloaded cc v1.0.67 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded strum_macros v0.20.1 [INFO] [stderr] Downloaded tinyvec v1.2.0 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded lzma-sys v0.1.17 [INFO] [stderr] Downloaded bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Downloaded libz-sys v1.1.3 [INFO] [stderr] Downloaded hts-sys v1.11.1-fix1 [INFO] [stderr] Downloaded openssl-src v111.15.0+1.1.1k [INFO] [stderr] Downloaded curl-sys v0.4.42+curl-7.76.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 15e6b96419bcf4fa297ccb2d968415680a7fd6d29bce692d75fa7426c9c6c820 [INFO] running `Command { std: "docker" "start" "-a" "15e6b96419bcf4fa297ccb2d968415680a7fd6d29bce692d75fa7426c9c6c820", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "15e6b96419bcf4fa297ccb2d968415680a7fd6d29bce692d75fa7426c9c6c820", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15e6b96419bcf4fa297ccb2d968415680a7fd6d29bce692d75fa7426c9c6c820", kill_on_drop: false }` [INFO] [stdout] 15e6b96419bcf4fa297ccb2d968415680a7fd6d29bce692d75fa7426c9c6c820 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a0a93e9fef667962fe5c824765291ad34d39fbc3ad3e9330195687906854e227 [INFO] running `Command { std: "docker" "start" "-a" "a0a93e9fef667962fe5c824765291ad34d39fbc3ad3e9330195687906854e227", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling tinyvec v1.2.0 [INFO] [stderr] Compiling unicode-bidi v0.3.5 [INFO] [stderr] Compiling form_urlencoded v1.0.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling unicode-normalization v0.1.17 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling idna v0.2.3 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling jobserver v0.1.22 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling url v2.2.2 [INFO] [stderr] Compiling openssl-src v111.15.0+1.1.1k [INFO] [stderr] Compiling openssl-sys v0.9.63 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling curl-sys v0.4.42+curl-7.76.0 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling thiserror v1.0.24 [INFO] [stderr] Compiling bio-types v0.11.0 [INFO] [stderr] Compiling rust-htslib v0.36.0 [INFO] [stderr] Compiling extract_bam_unique_alignment v1.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 44.71s [INFO] running `Command { std: "docker" "inspect" "a0a93e9fef667962fe5c824765291ad34d39fbc3ad3e9330195687906854e227", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a0a93e9fef667962fe5c824765291ad34d39fbc3ad3e9330195687906854e227", kill_on_drop: false }` [INFO] [stdout] a0a93e9fef667962fe5c824765291ad34d39fbc3ad3e9330195687906854e227 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 127768d0baa280b21225e8551f7aaf55477e5467b7c19ca291d76b4d503fc333 [INFO] running `Command { std: "docker" "start" "-a" "127768d0baa280b21225e8551f7aaf55477e5467b7c19ca291d76b4d503fc333", kill_on_drop: false }` [INFO] [stderr] Compiling extract_bam_unique_alignment v1.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.75s [INFO] running `Command { std: "docker" "inspect" "127768d0baa280b21225e8551f7aaf55477e5467b7c19ca291d76b4d503fc333", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "127768d0baa280b21225e8551f7aaf55477e5467b7c19ca291d76b4d503fc333", kill_on_drop: false }` [INFO] [stdout] 127768d0baa280b21225e8551f7aaf55477e5467b7c19ca291d76b4d503fc333 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-62/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 28ff9a8e6c0300ce48ae5e732a117e8ee7d2c625b3b5f1ecc716a4181956a25c [INFO] running `Command { std: "docker" "start" "-a" "28ff9a8e6c0300ce48ae5e732a117e8ee7d2c625b3b5f1ecc716a4181956a25c", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.84s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/extract_bam_unique_alignment-e2e21b74cb4d0a51) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "28ff9a8e6c0300ce48ae5e732a117e8ee7d2c625b3b5f1ecc716a4181956a25c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "28ff9a8e6c0300ce48ae5e732a117e8ee7d2c625b3b5f1ecc716a4181956a25c", kill_on_drop: false }` [INFO] [stdout] 28ff9a8e6c0300ce48ae5e732a117e8ee7d2c625b3b5f1ecc716a4181956a25c