[INFO] cloning repository https://github.com/genomehubs/goat-cli [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/genomehubs/goat-cli" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomehubs%2Fgoat-cli", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomehubs%2Fgoat-cli'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1f3e5c47cb291ea8124d356380cd794ee5f33a0f [INFO] testing genomehubs/goat-cli against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomehubs%2Fgoat-cli" "/workspace/builds/worker-66/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-66/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/genomehubs/goat-cli on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/genomehubs/goat-cli [INFO] finished tweaking git repo https://github.com/genomehubs/goat-cli [INFO] tweaked toml for git repo https://github.com/genomehubs/goat-cli written to /workspace/builds/worker-66/source/Cargo.toml [INFO] crate git repo https://github.com/genomehubs/goat-cli already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded tabled_derive v0.3.0 [INFO] [stderr] Downloaded again v0.1.2 [INFO] [stderr] Downloaded pkg-config v0.3.21 [INFO] [stderr] Downloaded clap v3.1.1 [INFO] [stderr] Downloaded tabled v0.6.0 [INFO] [stderr] Downloaded papergrid v0.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f3c8e314261e2ac82c68d39378cb1286c8e7db5f0e30296cc187263a6ad2d07a [INFO] running `Command { std: "docker" "start" "-a" "f3c8e314261e2ac82c68d39378cb1286c8e7db5f0e30296cc187263a6ad2d07a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f3c8e314261e2ac82c68d39378cb1286c8e7db5f0e30296cc187263a6ad2d07a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f3c8e314261e2ac82c68d39378cb1286c8e7db5f0e30296cc187263a6ad2d07a", kill_on_drop: false }` [INFO] [stdout] f3c8e314261e2ac82c68d39378cb1286c8e7db5f0e30296cc187263a6ad2d07a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1f19f640856ed3a7e48146938dd45da323a807773bc2ccfb6e7b3f200000a6c5 [INFO] running `Command { std: "docker" "start" "-a" "1f19f640856ed3a7e48146938dd45da323a807773bc2ccfb6e7b3f200000a6c5", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.30 [INFO] [stderr] Compiling libc v0.2.105 [INFO] [stderr] Compiling syn v1.0.80 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling pin-project-lite v0.2.7 [INFO] [stderr] Compiling futures-core v0.3.17 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling futures-io v0.3.17 [INFO] [stderr] Compiling slab v0.4.5 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling parking_lot_core v0.8.5 [INFO] [stderr] Compiling futures-task v0.3.17 [INFO] [stderr] Compiling futures-sink v0.3.17 [INFO] [stderr] Compiling smallvec v1.7.0 [INFO] [stderr] Compiling futures-channel v0.3.17 [INFO] [stderr] Compiling proc-macro-nested v0.1.7 [INFO] [stderr] Compiling cc v1.0.71 [INFO] [stderr] Compiling pkg-config v0.3.21 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling bytes v1.1.0 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling cache-padded v1.1.1 [INFO] [stderr] Compiling foreign-types-shared v0.1.1 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling fastrand v1.5.0 [INFO] [stderr] Compiling openssl v0.10.36 [INFO] [stderr] Compiling parking v2.0.0 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling event-listener v2.5.1 [INFO] [stderr] Compiling waker-fn v1.1.0 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling httparse v1.5.1 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Compiling native-tls v0.2.8 [INFO] [stderr] Compiling matches v0.1.9 [INFO] [stderr] Compiling openssl-probe v0.1.4 [INFO] [stderr] Compiling try-lock v0.2.3 [INFO] [stderr] Compiling async-task v4.0.3 [INFO] [stderr] Compiling encoding_rs v0.8.29 [INFO] [stderr] Compiling atomic-waker v1.0.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling unicode-bidi v0.3.7 [INFO] [stderr] Compiling tower-service v0.3.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.14 [INFO] [stderr] Compiling httpdate v1.0.1 [INFO] [stderr] Compiling serde_json v1.0.68 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling anyhow v1.0.44 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling ipnet v2.3.1 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling textwrap v0.14.2 [INFO] [stderr] Compiling base64 v0.13.0 [INFO] [stderr] Compiling value-bag v1.0.0-alpha.8 [INFO] [stderr] Compiling futures-macro v0.3.17 [INFO] [stderr] Compiling instant v0.1.12 [INFO] [stderr] Compiling futures-util v0.3.17 [INFO] [stderr] Compiling lock_api v0.4.5 [INFO] [stderr] Compiling tokio v1.12.0 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling tracing-core v0.1.21 [INFO] [stderr] Compiling tinyvec v1.5.0 [INFO] [stderr] Compiling foreign-types v0.3.2 [INFO] [stderr] Compiling form_urlencoded v1.0.1 [INFO] [stderr] Compiling async-mutex v1.4.0 [INFO] [stderr] Compiling async-lock v2.4.0 [INFO] [stderr] Compiling concurrent-queue v1.2.2 [INFO] [stderr] Compiling papergrid v0.3.0 [INFO] [stderr] Compiling async-channel v1.6.1 [INFO] [stderr] Compiling tracing v0.1.29 [INFO] [stderr] Compiling http v0.2.5 [INFO] [stderr] Compiling openssl-sys v0.9.67 [INFO] [stderr] Compiling futures-lite v1.12.0 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling os_str_bytes v6.0.0 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling signal-hook-registry v1.4.0 [INFO] [stderr] Compiling socket2 v0.4.2 [INFO] [stderr] Compiling terminal_size v0.1.17 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling unicode-normalization v0.1.19 [INFO] [stderr] Compiling clap v3.1.1 [INFO] [stderr] Compiling console v0.15.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling parking_lot v0.11.2 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling blocking v1.1.0 [INFO] [stderr] Compiling async-executor v1.4.1 [INFO] [stderr] Compiling idna v0.2.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling http-body v0.4.4 [INFO] [stderr] Compiling url v2.2.2 [INFO] [stderr] Compiling indicatif v0.16.2 [INFO] [stderr] Compiling serde_urlencoded v0.7.0 [INFO] [stderr] Compiling ctor v0.1.21 [INFO] [stderr] Compiling tokio-macros v1.5.0 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling tabled_derive v0.3.0 [INFO] [stderr] Compiling tabled v0.6.0 [INFO] [stderr] Compiling mio v0.7.14 [INFO] [stderr] Compiling polling v2.2.0 [INFO] [stderr] Compiling want v0.3.0 [INFO] [stderr] Compiling kv-log-macro v1.0.7 [INFO] [stderr] Compiling async-io v1.6.0 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling async-global-executor v2.0.2 [INFO] [stderr] Compiling async-std v1.10.0 [INFO] [stderr] Compiling futures-executor v0.3.17 [INFO] [stderr] Compiling futures v0.3.17 [INFO] [stderr] Compiling wasm-timer v0.2.5 [INFO] [stderr] Compiling again v0.1.2 [INFO] [stderr] Compiling tokio-util v0.6.8 [INFO] [stderr] Compiling tokio-native-tls v0.3.0 [INFO] [stderr] Compiling h2 v0.3.7 [INFO] [stderr] Compiling hyper v0.14.14 [INFO] [stderr] Compiling hyper-tls v0.5.0 [INFO] [stderr] Compiling reqwest v0.11.6 [INFO] [stderr] Compiling goat-cli v0.1.54 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated associated function `lookup::lookup::Collector::return_taxid_vec`: Currently deprecated. Might be used in future to suggest spelling corrections in search. [INFO] [stdout] --> src/lookup/lookup.rs:408:38 [INFO] [stdout] | [INFO] [stdout] 408 | let taxid_op = e.return_taxid_vec()?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 55.01s [INFO] running `Command { std: "docker" "inspect" "1f19f640856ed3a7e48146938dd45da323a807773bc2ccfb6e7b3f200000a6c5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1f19f640856ed3a7e48146938dd45da323a807773bc2ccfb6e7b3f200000a6c5", kill_on_drop: false }` [INFO] [stdout] 1f19f640856ed3a7e48146938dd45da323a807773bc2ccfb6e7b3f200000a6c5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c630e8854602da4160d1c6f561a90406e2ebe806e1afb08923114810d799d8db [INFO] running `Command { std: "docker" "start" "-a" "c630e8854602da4160d1c6f561a90406e2ebe806e1afb08923114810d799d8db", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling goat-cli v0.1.54 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated associated function `lookup::lookup::Collector::return_taxid_vec`: Currently deprecated. Might be used in future to suggest spelling corrections in search. [INFO] [stdout] --> src/lookup/lookup.rs:408:38 [INFO] [stdout] | [INFO] [stdout] 408 | let taxid_op = e.return_taxid_vec()?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `lookup::lookup::Collector::return_taxid_vec`: Currently deprecated. Might be used in future to suggest spelling corrections in search. [INFO] [stdout] --> src/lookup/lookup.rs:408:38 [INFO] [stdout] | [INFO] [stdout] 408 | let taxid_op = e.return_taxid_vec()?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.09s [INFO] running `Command { std: "docker" "inspect" "c630e8854602da4160d1c6f561a90406e2ebe806e1afb08923114810d799d8db", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c630e8854602da4160d1c6f561a90406e2ebe806e1afb08923114810d799d8db", kill_on_drop: false }` [INFO] [stdout] c630e8854602da4160d1c6f561a90406e2ebe806e1afb08923114810d799d8db [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-66/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 65fb972679e21c9139a36947288d63cc71b91e64b94699a357328710f67138d3 [INFO] running `Command { std: "docker" "start" "-a" "65fb972679e21c9139a36947288d63cc71b91e64b94699a357328710f67138d3", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated associated function `lookup::lookup::Collector::return_taxid_vec`: Currently deprecated. Might be used in future to suggest spelling corrections in search. [INFO] [stderr] --> src/lookup/lookup.rs:408:38 [INFO] [stderr] | [INFO] [stderr] 408 | let taxid_op = e.return_taxid_vec()?; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `goat-cli` (lib) generated 1 warning [INFO] [stderr] warning: `goat-cli` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.19s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/goat_cli-0b108cd975756da6) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/goat_cli-850b6eeecee88086) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests goat-cli [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "65fb972679e21c9139a36947288d63cc71b91e64b94699a357328710f67138d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "65fb972679e21c9139a36947288d63cc71b91e64b94699a357328710f67138d3", kill_on_drop: false }` [INFO] [stdout] 65fb972679e21c9139a36947288d63cc71b91e64b94699a357328710f67138d3