[INFO] cloning repository https://github.com/fulcrumgenomics/guide-counter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/guide-counter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e8d38521e0b2143ab9dbabd75d86abbd65f3a023
[INFO] testing fulcrumgenomics/guide-counter against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter" "/workspace/builds/worker-0/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/fulcrumgenomics/guide-counter on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/fulcrumgenomics/guide-counter
[INFO] finished tweaking git repo https://github.com/fulcrumgenomics/guide-counter
[INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/guide-counter written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate git repo https://github.com/fulcrumgenomics/guide-counter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded mimalloc v0.1.27
[INFO] [stderr]   Downloaded clap_derive v3.0.0-rc.9
[INFO] [stderr]   Downloaded clap v3.0.0-rc.9
[INFO] [stderr]   Downloaded fgoxide v0.1.3
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.23
[INFO] [stderr]   Downloaded fastq v0.6.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] da67edc3524e74bf37f32a953b744fa2264b3dc247a285e8bee5b25478abb3a7
[INFO] running `Command { std: "docker" "start" "-a" "da67edc3524e74bf37f32a953b744fa2264b3dc247a285e8bee5b25478abb3a7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "da67edc3524e74bf37f32a953b744fa2264b3dc247a285e8bee5b25478abb3a7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da67edc3524e74bf37f32a953b744fa2264b3dc247a285e8bee5b25478abb3a7", kill_on_drop: false }`
[INFO] [stdout] da67edc3524e74bf37f32a953b744fa2264b3dc247a285e8bee5b25478abb3a7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 252b89b5c438a301ab76e2028799b23ca0e57afdcf3b780ab31c76198a39ab67
[INFO] running `Command { std: "docker" "start" "-a" "252b89b5c438a301ab76e2028799b23ca0e57afdcf3b780ab31c76198a39ab67", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling syn v1.0.84
[INFO] [stderr]    Compiling serde_derive v1.0.132
[INFO] [stderr]    Compiling crc32fast v1.3.0
[INFO] [stderr]    Compiling serde v1.0.132
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling once_cell v1.9.0
[INFO] [stderr]    Compiling textwrap v0.14.2
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.23
[INFO] [stderr]    Compiling ahash v0.7.6
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling os_str_bytes v6.0.0
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling mimalloc v0.1.27
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling clap_derive v3.0.0-rc.9
[INFO] [stderr]    Compiling enum_dispatch v0.3.7
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling clap v3.0.0-rc.9
[INFO] [stderr]    Compiling lz4 v1.23.2
[INFO] [stderr]    Compiling fastq v0.6.0
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling fgoxide v0.1.3
[INFO] [stderr]    Compiling guide-counter v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 17.72s
[INFO] running `Command { std: "docker" "inspect" "252b89b5c438a301ab76e2028799b23ca0e57afdcf3b780ab31c76198a39ab67", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "252b89b5c438a301ab76e2028799b23ca0e57afdcf3b780ab31c76198a39ab67", kill_on_drop: false }`
[INFO] [stdout] 252b89b5c438a301ab76e2028799b23ca0e57afdcf3b780ab31c76198a39ab67
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dca93e941d9323d7f4ee8ee34f431a3c3c0de0cf4572f27b2a9ccc268e6a1e05
[INFO] running `Command { std: "docker" "start" "-a" "dca93e941d9323d7f4ee8ee34f431a3c3c0de0cf4572f27b2a9ccc268e6a1e05", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling ahash v0.7.6
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling guide-counter v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 6.34s
[INFO] running `Command { std: "docker" "inspect" "dca93e941d9323d7f4ee8ee34f431a3c3c0de0cf4572f27b2a9ccc268e6a1e05", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dca93e941d9323d7f4ee8ee34f431a3c3c0de0cf4572f27b2a9ccc268e6a1e05", kill_on_drop: false }`
[INFO] [stdout] dca93e941d9323d7f4ee8ee34f431a3c3c0de0cf4572f27b2a9ccc268e6a1e05
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d0276e79b6037488cee9ccbfa3c74a561dcf9b196d2b37b8dd5b6d789083848a
[INFO] running `Command { std: "docker" "start" "-a" "d0276e79b6037488cee9ccbfa3c74a561dcf9b196d2b37b8dd5b6d789083848a", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/guide_counter-04fe3c2ea5546695)
[INFO] [stdout] 
[INFO] [stdout] running 19 tests
[INFO] [stdout] test commands::count::tests::test_build_lookup ... ok
[INFO] [stdout] test commands::count::tests::test_sample_name ... ok
[INFO] [stdout] test guide::tests::test_guide_library_rejects_invalid_sequences ... ok
[INFO] [stdout] test commands::count::tests::test_count_reads_handles_empty_fastq ... ok
[INFO] [stdout] test guide::tests::test_guide_library_positive ... ok
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_finds_last_offset ... ok
[INFO] [stdout] test guide::tests::test_guide_library_rejects_duplicate_sequences ... ok
[INFO] [stdout] test guide::tests::test_guide_library_rejects_mixed_length ... ok
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_finds_offset_zero ... ok
[INFO] [stdout] test guide::tests::test_guide_uppercases_sequence ... ok
[INFO] [stdout] test guide::tests::test_is_all_acgt ... ok
[INFO] [stdout] test guide::tests::test_reading_guide_library_from_csv_file ... ok
[INFO] [stdout] test guide::tests::test_reading_guide_library_from_tsv_file ... ok
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_actually_subsamples ... ok
[INFO] [stdout] test guide::tests::test_load_guide_library_from_files ... ok
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_min_fraction ... ok
[INFO] [stdout] test commands::count::tests::test_count_reads ... ok
[INFO] [stdout] test commands::count::tests::test_reads_shorter_than_guides_ok ... ok
[INFO] [stdout] test commands::count::tests::test_end_to_end ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d0276e79b6037488cee9ccbfa3c74a561dcf9b196d2b37b8dd5b6d789083848a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d0276e79b6037488cee9ccbfa3c74a561dcf9b196d2b37b8dd5b6d789083848a", kill_on_drop: false }`
[INFO] [stdout] d0276e79b6037488cee9ccbfa3c74a561dcf9b196d2b37b8dd5b6d789083848a