[INFO] cloning repository https://github.com/clinico-omics/omics-tools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/omics-tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 225d596d6872b010a31f9f8703e5294decfa73ef
[INFO] testing clinico-omics/omics-tools against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools" "/workspace/builds/worker-101/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-101/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clinico-omics/omics-tools on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-101/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] finished tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] tweaked toml for git repo https://github.com/clinico-omics/omics-tools written to /workspace/builds/worker-101/source/Cargo.toml
[INFO] crate git repo https://github.com/clinico-omics/omics-tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-101/source/bam-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-101/source/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-101/source/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-101/source/Cargo.toml
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded hashlink v0.6.0
[INFO] [stderr]   Downloaded cloudflare-zlib-sys v0.2.0
[INFO] [stderr]   Downloaded exitcode v1.1.2
[INFO] [stderr]   Downloaded rusqlite v0.24.2
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded bio-types v0.11.0
[INFO] [stderr]   Downloaded rust-htslib v0.35.2
[INFO] [stderr]   Downloaded stderrlog v0.4.3
[INFO] [stderr]   Downloaded vcf v0.5.0
[INFO] [stderr]   Downloaded hts-sys v1.11.1-fix1
[INFO] [stderr]   Downloaded libsqlite3-sys v0.20.1
[INFO] [stderr]   Downloaded curl-sys v0.4.43+curl-7.76.0
[INFO] [stderr]   Downloaded openssl-src v111.15.0+1.1.1k
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2043de5e582b26a9516174c73dc1fe604aba9268cee79081f1c9b1e62b9a5ccc
[INFO] running `Command { std: "docker" "start" "-a" "2043de5e582b26a9516174c73dc1fe604aba9268cee79081f1c9b1e62b9a5ccc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2043de5e582b26a9516174c73dc1fe604aba9268cee79081f1c9b1e62b9a5ccc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2043de5e582b26a9516174c73dc1fe604aba9268cee79081f1c9b1e62b9a5ccc", kill_on_drop: false }`
[INFO] [stdout] 2043de5e582b26a9516174c73dc1fe604aba9268cee79081f1c9b1e62b9a5ccc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 217d5f917326531bdac7660c4ff099721c0d58a23cdff6aa3eae9bd0d8d22ed0
[INFO] running `Command { std: "docker" "start" "-a" "217d5f917326531bdac7660c4ff099721c0d58a23cdff6aa3eae9bd0d8d22ed0", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.94
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling proc-macro2 v1.0.26
[INFO] [stderr]    Compiling syn v1.0.72
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling gimli v0.24.0
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling rustc-demangle v0.1.19
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling ahash v0.4.7
[INFO] [stderr]    Compiling object v0.24.0
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling smallvec v1.6.1
[INFO] [stderr]    Compiling fallible-iterator v0.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling fallible-streaming-iterator v0.1.9
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling unicode-bidi v0.3.5
[INFO] [stderr]    Compiling thread_local v0.3.4
[INFO] [stderr]    Compiling form_urlencoded v1.0.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling tinyvec v1.2.0
[INFO] [stderr]    Compiling hashbrown v0.9.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling addr2line v0.15.1
[INFO] [stderr]    Compiling hashlink v0.6.0
[INFO] [stderr]    Compiling unicode-normalization v0.1.17
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling jobserver v0.1.22
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling stderrlog v0.4.3
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.43+curl-7.76.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling backtrace v0.3.59
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]    Compiling libsqlite3-sys v0.20.1
[INFO] [stderr]    Compiling cloudflare-zlib-sys v0.2.0
[INFO] [stderr]    Compiling openssl-sys v0.9.63
[INFO] [stderr]    Compiling flate2 v1.0.20
[INFO] [stderr]    Compiling thiserror-impl v1.0.24
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling vcf v0.5.0
[INFO] [stderr]    Compiling thiserror v1.0.24
[INFO] [stderr]    Compiling bio-types v0.11.0
[INFO] [stderr]    Compiling structopt v0.3.21
[INFO] [stderr]    Compiling rusqlite v0.24.2
[INFO] [stderr]    Compiling vcf-util v0.1.0 (/opt/rustwide/workdir/vcf-util)
[INFO] [stdout] warning: function is never used: `infer_format_schema`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stdout]     |
[INFO] [stdout] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `f64_into_vec_u8`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stdout]     |
[INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling rust-htslib v0.35.2
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bam-util v0.1.0 (/opt/rustwide/workdir/bam-util)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 22s
[INFO] running `Command { std: "docker" "inspect" "217d5f917326531bdac7660c4ff099721c0d58a23cdff6aa3eae9bd0d8d22ed0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "217d5f917326531bdac7660c4ff099721c0d58a23cdff6aa3eae9bd0d8d22ed0", kill_on_drop: false }`
[INFO] [stdout] 217d5f917326531bdac7660c4ff099721c0d58a23cdff6aa3eae9bd0d8d22ed0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8aebc560a1cffe57c2e4af8752d52008d6d1893037e91d8c344e949ace0ff7bd
[INFO] running `Command { std: "docker" "start" "-a" "8aebc560a1cffe57c2e4af8752d52008d6d1893037e91d8c344e949ace0ff7bd", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling vcf-util v0.1.0 (/opt/rustwide/workdir/vcf-util)
[INFO] [stdout] warning: function is never used: `infer_format_schema`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stdout]     |
[INFO] [stdout] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bam-util v0.1.0 (/opt/rustwide/workdir/bam-util)
[INFO] [stdout] warning: function is never used: `f64_into_vec_u8`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stdout]     |
[INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `infer_format_schema`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stdout]     |
[INFO] [stdout] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `f64_into_vec_u8`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stdout]     |
[INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.43s
[INFO] running `Command { std: "docker" "inspect" "8aebc560a1cffe57c2e4af8752d52008d6d1893037e91d8c344e949ace0ff7bd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8aebc560a1cffe57c2e4af8752d52008d6d1893037e91d8c344e949ace0ff7bd", kill_on_drop: false }`
[INFO] [stdout] 8aebc560a1cffe57c2e4af8752d52008d6d1893037e91d8c344e949ace0ff7bd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-101/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 862957d24853af72740db74c874b8a84c600bf5634afef777d7a6142fc9c59d2
[INFO] running `Command { std: "docker" "start" "-a" "862957d24853af72740db74c874b8a84c600bf5634afef777d7a6142fc9c59d2", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] warning: function is never used: `infer_format_schema`
[INFO] [stderr]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stderr]     |
[INFO] [stderr] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `f64_into_vec_u8`
[INFO] [stderr]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stderr]     |
[INFO] [stderr] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `vcf-util` (lib) generated 2 warnings
[INFO] [stderr] warning: `vcf-util` (lib test) generated 2 warnings (2 duplicates)
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> vcf-util/src/main.rs:2:1
[INFO] [stderr]   |
[INFO] [stderr] 2 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> vcf-util/src/main.rs:5:1
[INFO] [stderr]   |
[INFO] [stderr] 5 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `vcf-util` (bin "vcf-util" test) generated 2 warnings
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> bam-util/src/main.rs:2:1
[INFO] [stderr]   |
[INFO] [stderr] 2 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> bam-util/src/main.rs:5:1
[INFO] [stderr]   |
[INFO] [stderr] 5 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `bam-util` (bin "bam-util" test) generated 2 warnings
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1m 11s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bam_util-ccb5a1bc34231c83)
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bam_util-fb223fb969a41d0b)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/vcf_util-85511aa5994c7a23)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/vcf_util-28c3407b478e6d37)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bam_util
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) stdout ----
[INFO] [stdout] error[E0425]: cannot find function `remove_whitespace` in this scope
[INFO] [stdout]  --> src/bam/cigar.rs:22:15
[INFO] [stdout]   |
[INFO] [stdout] 3 | let removed = remove_whitespace("  each(S) && all(M)");
[INFO] [stdout]   |               ^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bam_util::bam::cigar::remove_whitespace;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.53s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] running `Command { std: "docker" "inspect" "862957d24853af72740db74c874b8a84c600bf5634afef777d7a6142fc9c59d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "862957d24853af72740db74c874b8a84c600bf5634afef777d7a6142fc9c59d2", kill_on_drop: false }`
[INFO] [stdout] 862957d24853af72740db74c874b8a84c600bf5634afef777d7a6142fc9c59d2