[INFO] cloning repository https://github.com/chfi/rust-qtlreaper [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/rust-qtlreaper" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8d650921ec4aec63c42068de58b91579228f57b1 [INFO] testing chfi/rust-qtlreaper against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper" "/workspace/builds/worker-94/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-94/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chfi/rust-qtlreaper on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] finished tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] tweaked toml for git repo https://github.com/chfi/rust-qtlreaper written to /workspace/builds/worker-94/source/Cargo.toml [INFO] crate git repo https://github.com/chfi/rust-qtlreaper already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 56100889476de750312ab55730e30df01c8d0eba673095abd29de7bcbe22d7e1 [INFO] running `Command { std: "docker" "start" "-a" "56100889476de750312ab55730e30df01c8d0eba673095abd29de7bcbe22d7e1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "56100889476de750312ab55730e30df01c8d0eba673095abd29de7bcbe22d7e1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "56100889476de750312ab55730e30df01c8d0eba673095abd29de7bcbe22d7e1", kill_on_drop: false }` [INFO] [stdout] 56100889476de750312ab55730e30df01c8d0eba673095abd29de7bcbe22d7e1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 70ee8f9c54921098689f18baa97de70a73b29ee847d3a7ca9861acdc2fa67911 [INFO] running `Command { std: "docker" "start" "-a" "70ee8f9c54921098689f18baa97de70a73b29ee847d3a7ca9861acdc2fa67911", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling libc v0.2.54 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling rand_core v0.4.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling syn v0.15.34 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling cfg-if v0.1.9 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling lazy_static v1.3.0 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling unicode-segmentation v1.3.0 [INFO] [stderr] Compiling serde v1.0.91 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling ryu v0.2.8 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling crossbeam-utils v0.2.2 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling serde_derive v1.0.91 [INFO] [stderr] Compiling structopt-derive v0.2.15 [INFO] [stderr] Compiling structopt v0.2.15 [INFO] [stderr] Compiling serde_json v1.0.39 [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_bootstrap` [INFO] [stdout] --> src/main.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | n_bootstrap: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/main.rs:13:21 [INFO] [stdout] | [INFO] [stdout] 13 | #[derive(StructOpt, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5m 13s [INFO] running `Command { std: "docker" "inspect" "70ee8f9c54921098689f18baa97de70a73b29ee847d3a7ca9861acdc2fa67911", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "70ee8f9c54921098689f18baa97de70a73b29ee847d3a7ca9861acdc2fa67911", kill_on_drop: false }` [INFO] [stdout] 70ee8f9c54921098689f18baa97de70a73b29ee847d3a7ca9861acdc2fa67911 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4d7ac1128d7f75c861cad917087b95bb63b4635909d8c2badf5f0f0d78ef3b65 [INFO] running `Command { std: "docker" "start" "-a" "4d7ac1128d7f75c861cad917087b95bb63b4635909d8c2badf5f0f0d78ef3b65", kill_on_drop: false }` [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `n_bootstrap` [INFO] [stdout] --> src/main.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | n_bootstrap: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] --> src/main.rs:13:21 [INFO] [stdout] | [INFO] [stdout] 13 | #[derive(StructOpt, Debug)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.48s [INFO] running `Command { std: "docker" "inspect" "4d7ac1128d7f75c861cad917087b95bb63b4635909d8c2badf5f0f0d78ef3b65", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4d7ac1128d7f75c861cad917087b95bb63b4635909d8c2badf5f0f0d78ef3b65", kill_on_drop: false }` [INFO] [stdout] 4d7ac1128d7f75c861cad917087b95bb63b4635909d8c2badf5f0f0d78ef3b65 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 948c965972613a065e5c1ecb0f3002b97d212e138df8652d45b295a84ed254c6 [INFO] running `Command { std: "docker" "start" "-a" "948c965972613a065e5c1ecb0f3002b97d212e138df8652d45b295a84ed254c6", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/lib.rs:5:22 [INFO] [stderr] | [INFO] [stderr] 5 | #[macro_use(s, azip, array)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:250:4 [INFO] [stderr] | [INFO] [stderr] 250 | fn regression_2n_variance( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `qtlreaper` (lib) generated 3 warnings [INFO] [stderr] warning: `qtlreaper` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] warning: field is never read: `n_bootstrap` [INFO] [stderr] --> src/main.rs:67:5 [INFO] [stderr] | [INFO] [stderr] 67 | n_bootstrap: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] --> src/main.rs:13:21 [INFO] [stderr] | [INFO] [stderr] 13 | #[derive(StructOpt, Debug)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `qtlreaper` (bin "qtlreaper" test) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.16s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/qtlreaper-dffa3e7cefd876bb) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test geneobject::tests::it_can_parse_header ... ok [INFO] [stdout] test geneobject::tests::it_can_parse_metadata ... ok [INFO] [stdout] test geneobject::tests::it_can_estimate_unknown_genotypes ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- geneobject::tests::it_can_estimate_unknown_genotypes stdout ---- [INFO] [stdout] thread 'geneobject::tests::it_can_estimate_unknown_genotypes' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627406, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.32233300305265566, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`, [INFO] [stdout] right: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627405, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.3223330030526561, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`', src/geneobject.rs:895:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55a32b51e82d - std::backtrace_rs::backtrace::libunwind::trace::hee598835bc88d35b [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x55a32b51e82d - std::backtrace_rs::backtrace::trace_unsynchronized::h9cdc730ba5cf5d72 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55a32b51e82d - std::sys_common::backtrace::_print_fmt::h75aeaf7ed30e43fa [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stdout] 3: 0x55a32b51e82d - ::fmt::h606862f787600875 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stdout] 4: 0x55a32b54406c - core::fmt::write::he803f0f418caf762 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/fmt/mod.rs:1190:17 [INFO] [stdout] 5: 0x55a32b51a128 - std::io::Write::write_fmt::hbe7c1a63616291e2 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/io/mod.rs:1657:15 [INFO] [stdout] 6: 0x55a32b520b07 - std::sys_common::backtrace::_print::h64d038cf8ac3e13e [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stdout] 7: 0x55a32b520b07 - std::sys_common::backtrace::print::h359300b4a7fccf65 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stdout] 8: 0x55a32b520b07 - std::panicking::default_hook::{{closure}}::hf51be35e2f510149 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:295:22 [INFO] [stdout] 9: 0x55a32b52083c - std::panicking::default_hook::h03ca0f22e1d2d25e [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:311:9 [INFO] [stdout] 10: 0x55a32b521259 - std::panicking::rust_panic_with_hook::h3b7380e99b825b63 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:698:17 [INFO] [stdout] 11: 0x55a32b520f47 - std::panicking::begin_panic_handler::{{closure}}::h8e849d0710154ce0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:588:13 [INFO] [stdout] 12: 0x55a32b51ecf4 - std::sys_common::backtrace::__rust_end_short_backtrace::hedcdaddbd4c46cc5 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stdout] 13: 0x55a32b520c59 - rust_begin_unwind [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:584:5 [INFO] [stdout] 14: 0x55a32b486133 - core::panicking::panic_fmt::he1bbc7336d49a357 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:143:14 [INFO] [stdout] 15: 0x55a32b542988 - core::panicking::assert_failed_inner::hbaac70a629215a04 [INFO] [stdout] 16: 0x55a32b4a552a - core::panicking::assert_failed::h532ec950af42ea16 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:182:5 [INFO] [stdout] 17: 0x55a32b4a3ebc - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::h4f8811aa7edb3921 [INFO] [stdout] at /opt/rustwide/workdir/src/geneobject.rs:895:9 [INFO] [stdout] 18: 0x55a32b4a189a - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::{{closure}}::hc2f209310d1f2935 [INFO] [stdout] at /opt/rustwide/workdir/src/geneobject.rs:808:5 [INFO] [stdout] 19: 0x55a32b4ae57e - core::ops::function::FnOnce::call_once::h0b5ffa9da2969913 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x55a32b4e0db3 - core::ops::function::FnOnce::call_once::h2a47b4b927cb6ca5 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x55a32b4e0db3 - test::__rust_begin_short_backtrace::h594ef8055a183b9b [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:575:5 [INFO] [stdout] 22: 0x55a32b4dfa94 - as core::ops::function::FnOnce>::call_once::hb40cbb8bc3e1be15 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 23: 0x55a32b4dfa94 - as core::ops::function::FnOnce<()>>::call_once::ha4f2bd3b806745a0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 24: 0x55a32b4dfa94 - std::panicking::try::do_call::h92af9f8bc77a5987 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stdout] 25: 0x55a32b4dfa94 - std::panicking::try::h9df49eeae42572b7 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stdout] 26: 0x55a32b4dfa94 - std::panic::catch_unwind::h101dbadc82bbe0fd [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stdout] 27: 0x55a32b4dfa94 - test::run_test_in_process::h2ad7bffb068e750a [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:598:18 [INFO] [stdout] 28: 0x55a32b4dfa94 - test::run_test::run_test_inner::{{closure}}::h384faf46554c5acb [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:492:39 [INFO] [stdout] 29: 0x55a32b4e93b1 - test::run_test::run_test_inner::{{closure}}::h17cfe94835a46685 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/test/src/lib.rs:519:37 [INFO] [stdout] 30: 0x55a32b4e93b1 - std::sys_common::backtrace::__rust_begin_short_backtrace::h82709e5086312627 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stdout] 31: 0x55a32b4b5a2f - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hdfea66a201b39571 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/thread/mod.rs:498:17 [INFO] [stdout] 32: 0x55a32b4b5a2f - as core::ops::function::FnOnce<()>>::call_once::h4912df03598e67fa [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 33: 0x55a32b4b5a2f - std::panicking::try::do_call::h6d5dc1045d0eade8 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stdout] 34: 0x55a32b4b5a2f - std::panicking::try::hbc897fc717ec6571 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stdout] 35: 0x55a32b4b5a2f - std::panic::catch_unwind::h27f1e958c91391ad [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stdout] 36: 0x55a32b4b5a2f - std::thread::Builder::spawn_unchecked_::{{closure}}::h1b42e48537edc3c0 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/thread/mod.rs:497:30 [INFO] [stdout] 37: 0x55a32b4b5a2f - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9137b3d6d2a88354 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 38: 0x55a32b526f43 - as core::ops::function::FnOnce>::call_once::hf70ac038171e3e1a [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 39: 0x55a32b526f43 - as core::ops::function::FnOnce>::call_once::he6690128792365ad [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/alloc/src/boxed.rs:1853:9 [INFO] [stdout] 40: 0x55a32b526f43 - std::sys::unix::thread::Thread::new::thread_start::ha07928d93d5a5ec9 [INFO] [stdout] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 41: 0x7fefacb40609 - start_thread [INFO] [stdout] 42: 0x7fefac910163 - clone [INFO] [stdout] 43: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] geneobject::tests::it_can_estimate_unknown_genotypes [INFO] [stdout] [INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "948c965972613a065e5c1ecb0f3002b97d212e138df8652d45b295a84ed254c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "948c965972613a065e5c1ecb0f3002b97d212e138df8652d45b295a84ed254c6", kill_on_drop: false }` [INFO] [stdout] 948c965972613a065e5c1ecb0f3002b97d212e138df8652d45b295a84ed254c6