[INFO] cloning repository https://github.com/URI-ABD/genomic_distance
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/URI-ABD/genomic_distance" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FURI-ABD%2Fgenomic_distance", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FURI-ABD%2Fgenomic_distance'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4c1b7afcda5ed9dd2d4704269275c7dcff4fae7d
[INFO] testing URI-ABD/genomic_distance against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FURI-ABD%2Fgenomic_distance" "/workspace/builds/worker-32/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-32/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/URI-ABD/genomic_distance on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/URI-ABD/genomic_distance
[INFO] finished tweaking git repo https://github.com/URI-ABD/genomic_distance
[INFO] tweaked toml for git repo https://github.com/URI-ABD/genomic_distance written to /workspace/builds/worker-32/source/Cargo.toml
[INFO] crate git repo https://github.com/URI-ABD/genomic_distance already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr] warning: spurious network error (2 tries remaining): [28] Timeout was reached (download of `time-macros-impl v0.1.0` failed to transfer more than 10 bytes in 30s)
[INFO] [stderr] warning: spurious network error (2 tries remaining): [28] Timeout was reached (failed to download any data for `time v0.2.9` within 30s)
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded ndarray v0.13.0
[INFO] [stderr]   Downloaded time v0.2.9
[INFO] [stderr]   Downloaded snafu-derive v0.5.0
[INFO] [stderr]   Downloaded standback v0.2.2
[INFO] [stderr]   Downloaded serde_derive v1.0.105
[INFO] [stderr]   Downloaded time-macros-impl v0.1.0
[INFO] [stderr]   Downloaded bio-types v0.6.0
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded bio v0.30.0
[INFO] [stderr]   Downloaded derive-new v0.5.8
[INFO] [stderr]   Downloaded bytecount v0.6.0
[INFO] [stderr]   Downloaded statrs v0.11.0
[INFO] [stderr]   Downloaded snafu v0.5.0
[INFO] [stderr]   Downloaded float-cmp v0.6.0
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 23074d0d6efabefd484eea12065734330c64dd613ebaa953a0668d67b6bcf750
[INFO] running `Command { std: "docker" "start" "-a" "23074d0d6efabefd484eea12065734330c64dd613ebaa953a0668d67b6bcf750", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "23074d0d6efabefd484eea12065734330c64dd613ebaa953a0668d67b6bcf750", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "23074d0d6efabefd484eea12065734330c64dd613ebaa953a0668d67b6bcf750", kill_on_drop: false }`
[INFO] [stdout] 23074d0d6efabefd484eea12065734330c64dd613ebaa953a0668d67b6bcf750
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5296e8df5b8adb7caf1c08853b5041bdea610def1bc9e8154080a8f28e0fd2e3
[INFO] running `Command { std: "docker" "start" "-a" "5296e8df5b8adb7caf1c08853b5041bdea610def1bc9e8154080a8f28e0fd2e3", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.10
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling libc v0.2.68
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling rand_core v0.4.2
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling serde v1.0.105
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling rustversion v1.0.2
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling ryu v1.0.3
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling rustc-demangle v0.1.16
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling standback v0.2.2
[INFO] [stderr]    Compiling rayon-core v1.7.0
[INFO] [stderr]    Compiling proc-macro-hack v0.5.15
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling fnv v1.0.6
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling strum v0.16.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling rand_jitter v0.1.4
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-bigint v0.2.6
[INFO] [stderr]    Compiling num-iter v0.1.40
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling num_cpus v1.12.0
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling backtrace-sys v0.1.35
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling regex v1.3.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling float-cmp v0.6.0
[INFO] [stderr]    Compiling crossbeam-queue v0.2.1
[INFO] [stderr]    Compiling backtrace v0.3.46
[INFO] [stderr]    Compiling statrs v0.11.0
[INFO] [stderr]    Compiling crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling rayon v1.3.0
[INFO] [stderr]    Compiling num v0.2.1
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.105
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling time-macros-impl v0.1.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling time v0.2.9
[INFO] [stderr]    Compiling time-macros v0.1.0
[INFO] [stderr]    Compiling bstr v0.2.12
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling genomic_distance v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 57s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: time-macros-impl v0.1.0
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "5296e8df5b8adb7caf1c08853b5041bdea610def1bc9e8154080a8f28e0fd2e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5296e8df5b8adb7caf1c08853b5041bdea610def1bc9e8154080a8f28e0fd2e3", kill_on_drop: false }`
[INFO] [stdout] 5296e8df5b8adb7caf1c08853b5041bdea610def1bc9e8154080a8f28e0fd2e3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7f6e5a56486b28c22105bf62dd0e544ef55aa5fb88f238e16c7c7f6024593364
[INFO] running `Command { std: "docker" "start" "-a" "7f6e5a56486b28c22105bf62dd0e544ef55aa5fb88f238e16c7c7f6024593364", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling genomic_distance v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.43s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: time-macros-impl v0.1.0
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "7f6e5a56486b28c22105bf62dd0e544ef55aa5fb88f238e16c7c7f6024593364", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7f6e5a56486b28c22105bf62dd0e544ef55aa5fb88f238e16c7c7f6024593364", kill_on_drop: false }`
[INFO] [stdout] 7f6e5a56486b28c22105bf62dd0e544ef55aa5fb88f238e16c7c7f6024593364
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-32/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 061d6ee8210a54b9585d70df53db20be9b50e011d76693751df342cfc7c1f0ab
[INFO] running `Command { std: "docker" "start" "-a" "061d6ee8210a54b9585d70df53db20be9b50e011d76693751df342cfc7c1f0ab", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.40s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: time-macros-impl v0.1.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/genomic_distance-5a9649b0f5c3c2c6)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "061d6ee8210a54b9585d70df53db20be9b50e011d76693751df342cfc7c1f0ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "061d6ee8210a54b9585d70df53db20be9b50e011d76693751df342cfc7c1f0ab", kill_on_drop: false }`
[INFO] [stdout] 061d6ee8210a54b9585d70df53db20be9b50e011d76693751df342cfc7c1f0ab