[INFO] cloning repository https://github.com/NickRoz1/rqtl2-geno-kinship-rust [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/NickRoz1/rqtl2-geno-kinship-rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Frqtl2-geno-kinship-rust", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Frqtl2-geno-kinship-rust'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 04d61248daee802a355c018b0ddc5dddf2c6b3cf [INFO] testing NickRoz1/rqtl2-geno-kinship-rust against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Frqtl2-geno-kinship-rust" "/workspace/builds/worker-77/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-77/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/NickRoz1/rqtl2-geno-kinship-rust on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/NickRoz1/rqtl2-geno-kinship-rust [INFO] finished tweaking git repo https://github.com/NickRoz1/rqtl2-geno-kinship-rust [INFO] tweaked toml for git repo https://github.com/NickRoz1/rqtl2-geno-kinship-rust written to /workspace/builds/worker-77/source/Cargo.toml [INFO] crate git repo https://github.com/NickRoz1/rqtl2-geno-kinship-rust already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 18475fc3a63de7dbfb832c9f77bbf7ef86b205f9e5378b7b2d771cbf69368462 [INFO] running `Command { std: "docker" "start" "-a" "18475fc3a63de7dbfb832c9f77bbf7ef86b205f9e5378b7b2d771cbf69368462", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "18475fc3a63de7dbfb832c9f77bbf7ef86b205f9e5378b7b2d771cbf69368462", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "18475fc3a63de7dbfb832c9f77bbf7ef86b205f9e5378b7b2d771cbf69368462", kill_on_drop: false }` [INFO] [stdout] 18475fc3a63de7dbfb832c9f77bbf7ef86b205f9e5378b7b2d771cbf69368462 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2ab48a9a48eaa27b8465473d11dee3d00b1475c3e17bddd796eee09002028d0e [INFO] running `Command { std: "docker" "start" "-a" "2ab48a9a48eaa27b8465473d11dee3d00b1475c3e17bddd796eee09002028d0e", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling kinship_matrix v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/lib.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | / format!( [INFO] [stdout] 286 | | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stdout] 287 | | greater or equal to amount of ids \ [INFO] [stdout] 288 | | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stdout] 289 | | total_snps_read, ids_num [INFO] [stdout] 290 | | ) [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 285 ~ [INFO] [stdout] 286 | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stdout] 287 | greater or equal to amount of ids \ [INFO] [stdout] 288 | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stdout] 289 | total_snps_read, ids_num [INFO] [stdout] 290 ~ [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5.21s [INFO] running `Command { std: "docker" "inspect" "2ab48a9a48eaa27b8465473d11dee3d00b1475c3e17bddd796eee09002028d0e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2ab48a9a48eaa27b8465473d11dee3d00b1475c3e17bddd796eee09002028d0e", kill_on_drop: false }` [INFO] [stdout] 2ab48a9a48eaa27b8465473d11dee3d00b1475c3e17bddd796eee09002028d0e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 00693ac1c55dfc786c0642bc6b8103926e5db2bbd2ddc75bf456f5f17e6d01fe [INFO] running `Command { std: "docker" "start" "-a" "00693ac1c55dfc786c0642bc6b8103926e5db2bbd2ddc75bf456f5f17e6d01fe", kill_on_drop: false }` [INFO] [stderr] Compiling kinship_matrix v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/lib.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | / format!( [INFO] [stdout] 286 | | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stdout] 287 | | greater or equal to amount of ids \ [INFO] [stdout] 288 | | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stdout] 289 | | total_snps_read, ids_num [INFO] [stdout] 290 | | ) [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 285 ~ [INFO] [stdout] 286 | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stdout] 287 | greater or equal to amount of ids \ [INFO] [stdout] 288 | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stdout] 289 | total_snps_read, ids_num [INFO] [stdout] 290 ~ [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/lib.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | / format!( [INFO] [stdout] 286 | | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stdout] 287 | | greater or equal to amount of ids \ [INFO] [stdout] 288 | | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stdout] 289 | | total_snps_read, ids_num [INFO] [stdout] 290 | | ) [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 285 ~ [INFO] [stdout] 286 | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stdout] 287 | greater or equal to amount of ids \ [INFO] [stdout] 288 | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stdout] 289 | total_snps_read, ids_num [INFO] [stdout] 290 ~ [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.98s [INFO] running `Command { std: "docker" "inspect" "00693ac1c55dfc786c0642bc6b8103926e5db2bbd2ddc75bf456f5f17e6d01fe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "00693ac1c55dfc786c0642bc6b8103926e5db2bbd2ddc75bf456f5f17e6d01fe", kill_on_drop: false }` [INFO] [stdout] 00693ac1c55dfc786c0642bc6b8103926e5db2bbd2ddc75bf456f5f17e6d01fe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 71f9fa2569f183a211bceedfddceb31a9b08f8619db2e4991d7f9651050cde77 [INFO] running `Command { std: "docker" "start" "-a" "71f9fa2569f183a211bceedfddceb31a9b08f8619db2e4991d7f9651050cde77", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/lib.rs:285:9 [INFO] [stderr] | [INFO] [stderr] 285 | / format!( [INFO] [stderr] 286 | | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stderr] 287 | | greater or equal to amount of ids \ [INFO] [stderr] 288 | | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stderr] 289 | | total_snps_read, ids_num [INFO] [stderr] 290 | | ) [INFO] [stderr] | |_________^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of assert!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: the assert!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stderr] help: remove the `format!(..)` macro call [INFO] [stderr] | [INFO] [stderr] 285 ~ [INFO] [stderr] 286 | "Amount of SNPS (lines in file - (1+comments_lines_count)) should be \ [INFO] [stderr] 287 | greater or equal to amount of ids \ [INFO] [stderr] 288 | (amount of markers). SNP number: {}, IDS number: {}", [INFO] [stderr] 289 | total_snps_read, ids_num [INFO] [stderr] 290 ~ [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `kinship_matrix` (lib) generated 1 warning [INFO] [stderr] warning: `kinship_matrix` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.97s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rqtl2-9add901fb69d67c9) [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-7591e28326d35455) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test tests::calc_kinsip ... ok [INFO] [stdout] test tests::snp_iter ... ok [INFO] [stdout] test tests::parsers ... ok [INFO] [stdout] test tests::read_snps ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s [INFO] [stdout] [INFO] [stderr] Doc-tests rqtl2 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "71f9fa2569f183a211bceedfddceb31a9b08f8619db2e4991d7f9651050cde77", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "71f9fa2569f183a211bceedfddceb31a9b08f8619db2e4991d7f9651050cde77", kill_on_drop: false }` [INFO] [stdout] 71f9fa2569f183a211bceedfddceb31a9b08f8619db2e4991d7f9651050cde77