[INFO] cloning repository https://github.com/NickRoz1/gbam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/NickRoz1/gbam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4da128ec3f59ce5b32bf6718e32151a61267eaae
[INFO] testing NickRoz1/gbam against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam" "/workspace/builds/worker-19/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-19/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/NickRoz1/gbam on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/NickRoz1/gbam
[INFO] finished tweaking git repo https://github.com/NickRoz1/gbam
[INFO] tweaked toml for git repo https://github.com/NickRoz1/gbam written to /workspace/builds/worker-19/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/NickRoz1/bam_parallel`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded inventory-impl v0.1.11
[INFO] [stderr]   Downloaded unindent v0.1.8
[INFO] [stderr]   Downloaded inventory v0.1.11
[INFO] [stderr]   Downloaded ctor v0.1.22
[INFO] [stderr]   Downloaded pyo3-macros v0.13.2
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.13.2
[INFO] [stderr]   Downloaded indoc v0.3.6
[INFO] [stderr]   Downloaded indoc-impl v0.3.6
[INFO] [stderr]   Downloaded lz4 v1.23.3
[INFO] [stderr]   Downloaded lz4_flex v0.8.2
[INFO] [stderr]   Downloaded rayon-core v1.9.2
[INFO] [stderr]   Downloaded flate2 v1.0.23
[INFO] [stderr]   Downloaded lz4-sys v1.9.3
[INFO] [stderr]   Downloaded rayon v1.5.2
[INFO] [stderr]   Downloaded pyo3 v0.13.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6d4d44db8beeb31dc77d9b636fbd02fdba1e4bfd3ce6a5ec653c0c074da06aea
[INFO] running `Command { std: "docker" "start" "-a" "6d4d44db8beeb31dc77d9b636fbd02fdba1e4bfd3ce6a5ec653c0c074da06aea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6d4d44db8beeb31dc77d9b636fbd02fdba1e4bfd3ce6a5ec653c0c074da06aea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6d4d44db8beeb31dc77d9b636fbd02fdba1e4bfd3ce6a5ec653c0c074da06aea", kill_on_drop: false }`
[INFO] [stdout] 6d4d44db8beeb31dc77d9b636fbd02fdba1e4bfd3ce6a5ec653c0c074da06aea
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-19/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f5f95f6ac4cec26587657ca4d9713829f09665bf546ea1ab60577be4dd4b387b
[INFO] running `Command { std: "docker" "start" "-a" "f5f95f6ac4cec26587657ca4d9713829f09665bf546ea1ab60577be4dd4b387b", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.123
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling rayon-core v1.9.2
[INFO] [stderr]    Compiling futures-core v0.3.21
[INFO] [stderr]    Compiling zstd-safe v2.0.6+zstd.1.4.7
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling futures-sink v0.3.21
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.8
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling lock_api v0.4.7
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling rayon v1.5.2
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling miniz_oxide v0.5.1
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling serde_json v1.0.79
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling twox-hash v1.6.2
[INFO] [stderr]    Compiling lz4_flex v0.8.2
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.4
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling spin v0.9.2
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling getrandom v0.2.6
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v0.2.13
[INFO] [stderr]    Compiling flate2 v1.0.23
[INFO] [stderr]    Compiling memmap2 v0.3.1
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling nanorand v0.7.0
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling tempdir v0.3.7
[INFO] [stderr]    Compiling zstd-sys v1.4.18+zstd.1.4.7
[INFO] [stderr]    Compiling lz4-sys v1.9.3
[INFO] [stderr]    Compiling pin-project-internal v1.0.10
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling pin-project v1.0.10
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling flume v0.10.12
[INFO] [stderr]    Compiling lz4 v1.23.3
[INFO] [stderr]    Compiling bam_tools v0.1.0 (https://github.com/NickRoz1/bam_parallel#247e564b)
[INFO] [stderr]    Compiling zstd v0.5.4+zstd.1.4.7
[INFO] [stderr]    Compiling gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools)
[INFO] [stdout] warning: unused imports: `BTreeSet`, `borrow::Borrow`, `cell::RefCell`, `rc::Rc`
[INFO] [stdout]  --> gbam_tools/src/reader/column.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 |     borrow::Borrow,
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 3 |     cell::RefCell,
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 4 |     collections::{BTreeMap, BTreeSet},
[INFO] [stdout]   |                             ^^^^^^^^
[INFO] [stdout] 5 |     io::Result,
[INFO] [stdout] 6 |     rc::Rc,
[INFO] [stdout]   |     ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `DATA_FIELDS_NUM`
[INFO] [stdout]  --> gbam_tools/src/reader/parse_tmplt.rs:5:76
[INFO] [stdout]   |
[INFO] [stdout] 5 |     field_type, is_data_field, var_size_field_to_index, FieldType, Fields, DATA_FIELDS_NUM,
[INFO] [stdout]   |                                                                            ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rc::Rc`
[INFO] [stdout]  --> gbam_tools/src/reader/reader.rs:2:37
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::{borrow::Borrow, fs::File, rc::Rc};
[INFO] [stdout]   |                                     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `parse_tmplt::ParsingTemplate`
[INFO] [stdout]  --> gbam_tools/src/reader/records.rs:1:13
[INFO] [stdout]   |
[INFO] [stdout] 1 | use super::{parse_tmplt::ParsingTemplate, reader::Reader, record::GbamRecord};
[INFO] [stdout]   |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> gbam_tools/src/reader/records.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `consume_reference_sequences` found for struct `bam_tools::Reader` in the current scope
[INFO] [stdout]   --> gbam_tools/src/bam/bam_to_gbam.rs:18:17
[INFO] [stdout]    |
[INFO] [stdout] 18 |     bgzf_reader.consume_reference_sequences().unwrap();
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: there is an associated function with a similar name: `parse_reference_sequences`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error; 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `gbam_tools` due to 2 previous errors; 5 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "f5f95f6ac4cec26587657ca4d9713829f09665bf546ea1ab60577be4dd4b387b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f5f95f6ac4cec26587657ca4d9713829f09665bf546ea1ab60577be4dd4b387b", kill_on_drop: false }`
[INFO] [stdout] f5f95f6ac4cec26587657ca4d9713829f09665bf546ea1ab60577be4dd4b387b