[INFO] cloning repository https://github.com/HopedWall/GFAtoVCF
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/GFAtoVCF" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8960fd42cada8e94d81c8391405e0df59045a60a
[INFO] testing HopedWall/GFAtoVCF against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/HopedWall/GFAtoVCF on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/HopedWall/GFAtoVCF
[INFO] finished tweaking git repo https://github.com/HopedWall/GFAtoVCF
[INFO] tweaked toml for git repo https://github.com/HopedWall/GFAtoVCF written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/HopedWall/GFAtoVCF already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded priority-queue v1.2.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 60414a8c5189403eb2b81b42b95791a12120b961aba8349f06898514a4cf5054
[INFO] running `Command { std: "docker" "start" "-a" "60414a8c5189403eb2b81b42b95791a12120b961aba8349f06898514a4cf5054", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "60414a8c5189403eb2b81b42b95791a12120b961aba8349f06898514a4cf5054", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "60414a8c5189403eb2b81b42b95791a12120b961aba8349f06898514a4cf5054", kill_on_drop: false }`
[INFO] [stdout] 60414a8c5189403eb2b81b42b95791a12120b961aba8349f06898514a4cf5054
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8058b3eb796d0aab4e2156fd8db5a2e9b74fc0afa2f140b5882b0d7f611fd598
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "8058b3eb796d0aab4e2156fd8db5a2e9b74fc0afa2f140b5882b0d7f611fd598", kill_on_drop: false }`
[INFO] [stderr]    Compiling json v0.12.4
[INFO] [stderr]    Compiling priority-queue v1.2.1
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling indexmap v1.8.0
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling gfa v0.2.3
[INFO] [stderr]    Compiling handlegraph v0.2.0
[INFO] [stderr]    Compiling gfa_to_vcf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 33.00s
[INFO] running `Command { std: "docker" "inspect" "8058b3eb796d0aab4e2156fd8db5a2e9b74fc0afa2f140b5882b0d7f611fd598", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8058b3eb796d0aab4e2156fd8db5a2e9b74fc0afa2f140b5882b0d7f611fd598", kill_on_drop: false }`
[INFO] [stdout] 8058b3eb796d0aab4e2156fd8db5a2e9b74fc0afa2f140b5882b0d7f611fd598
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 1ff4f8243bdfff1e3541ecafad4b69f303885070505054aabb3bef5e3108860a
[INFO] running `Command { std: "docker" "start" "-a" "1ff4f8243bdfff1e3541ecafad4b69f303885070505054aabb3bef5e3108860a", kill_on_drop: false }`
[INFO] [stderr]    Compiling gfa_to_vcf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.17s
[INFO] running `Command { std: "docker" "inspect" "1ff4f8243bdfff1e3541ecafad4b69f303885070505054aabb3bef5e3108860a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1ff4f8243bdfff1e3541ecafad4b69f303885070505054aabb3bef5e3108860a", kill_on_drop: false }`
[INFO] [stdout] 1ff4f8243bdfff1e3541ecafad4b69f303885070505054aabb3bef5e3108860a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c7f8eea976abd70273eedb6126c45c5e1f899ce54d2260ea3f91df783507cd50
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c7f8eea976abd70273eedb6126c45c5e1f899ce54d2260ea3f91df783507cd50", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.06s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gfa_to_vcf-1b9c889a61b43cc3)
[INFO] [stdout] 
[INFO] [stdout] running 19 tests
[INFO] [stdout] test bubble_detection::tests::find_bfs_1 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bubbles_2 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bubbles_1 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bfs_paths_2 ... ok
[INFO] [stdout] test variant_identification::tests::whole_script_2 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_1 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_5_alt ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_2 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_3 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_5 ... ok
[INFO] [stdout] test bubble_detection::tests::test_bfs_distances ... ok
[INFO] [stdout] test bubble_detection::tests::test_dist_to_num_nodes ... ok
[INFO] [stdout] test bubble_detection::tests::test_bubble_detection ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_4 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_4_alt ... ok
[INFO] [stdout] test bubble_detection::tests::test_path_to_steps ... ok
[INFO] [stdout] test variant_identification::tests::test_variant_detection ... ok
[INFO] [stdout] test variant_identification::tests::whole_script_1 ... ok
[INFO] [stdout] test bubble_detection::tests::test_bfs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c7f8eea976abd70273eedb6126c45c5e1f899ce54d2260ea3f91df783507cd50", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c7f8eea976abd70273eedb6126c45c5e1f899ce54d2260ea3f91df783507cd50", kill_on_drop: false }`
[INFO] [stdout] c7f8eea976abd70273eedb6126c45c5e1f899ce54d2260ea3f91df783507cd50