[INFO] cloning repository https://github.com/Ebedthan/sabreur
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Ebedthan/sabreur" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9974c5dddd191969d5cbd673ad130a8f439166ef
[INFO] testing Ebedthan/sabreur against 1.60.0 for beta-1.61-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur" "/workspace/builds/worker-87/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-87/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Ebedthan/sabreur on toolchain 1.60.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Ebedthan/sabreur
[INFO] finished tweaking git repo https://github.com/Ebedthan/sabreur
[INFO] tweaked toml for git repo https://github.com/Ebedthan/sabreur written to /workspace/builds/worker-87/source/Cargo.toml
[INFO] crate git repo https://github.com/Ebedthan/sabreur already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded exitcode v1.1.2
[INFO] [stderr]   Downloaded semver v1.0.3
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
[INFO] [stderr]   Downloaded rand_distr v0.2.2
[INFO] [stderr]   Downloaded serde_cbor v0.11.1
[INFO] [stderr]   Downloaded generic-array v0.13.3
[INFO] [stderr]   Downloaded criterion v0.3.4
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded bio-types v0.11.0
[INFO] [stderr]   Downloaded xz2 v0.1.6
[INFO] [stderr]   Downloaded criterion-plot v0.4.3
[INFO] [stderr]   Downloaded sysinfo v0.20.3
[INFO] [stderr]   Downloaded anyhow v1.0.41
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded ndarray v0.14.0
[INFO] [stderr]   Downloaded nalgebra v0.19.0
[INFO] [stderr]   Downloaded bio v0.35.0
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded array-macro v1.0.5
[INFO] [stderr]   Downloaded alga v0.9.3
[INFO] [stderr]   Downloaded niffler v2.3.2
[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded enum-map v0.6.4
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded statrs v0.13.0
[INFO] [stderr]   Downloaded bgzip v0.2.1
[INFO] [stderr]   Downloaded bzip2 v0.4.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 99d14ce252b38838f24b52a5191882b12d9f6dfc6255bc703bf9dee3c229d5d3
[INFO] running `Command { std: "docker" "start" "-a" "99d14ce252b38838f24b52a5191882b12d9f6dfc6255bc703bf9dee3c229d5d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "99d14ce252b38838f24b52a5191882b12d9f6dfc6255bc703bf9dee3c229d5d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "99d14ce252b38838f24b52a5191882b12d9f6dfc6255bc703bf9dee3c229d5d3", kill_on_drop: false }`
[INFO] [stdout] 99d14ce252b38838f24b52a5191882b12d9f6dfc6255bc703bf9dee3c229d5d3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8ca70a8ef881f0d4ff7f44ae255a95d159d9c0bd3601fb7005e0b40e900b3beb
[INFO] running `Command { std: "docker" "start" "-a" "8ca70a8ef881f0d4ff7f44ae255a95d159d9c0bd3601fb7005e0b40e900b3beb", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.101
[INFO] [stderr]    Compiling proc-macro2 v1.0.27
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.73
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling serde_derive v1.0.126
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling cc v1.0.68
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling anyhow v1.0.41
[INFO] [stderr]    Compiling sysinfo v0.20.3
[INFO] [stderr]    Compiling itoa v0.4.7
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling bio v0.35.0
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling strum v0.20.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling once_cell v1.8.0
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling crossbeam-deque v0.8.0
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling num-complex v0.3.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling generic-array v0.13.3
[INFO] [stderr]    Compiling flate2 v1.0.20
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling colored v1.9.3
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling fern v0.5.9
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling nalgebra v0.19.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling thiserror v1.0.26
[INFO] [stderr]    Compiling bgzip v0.2.1
[INFO] [stderr]    Compiling bio-types v0.11.0
[INFO] [stderr]    Compiling niffler v2.3.2
[INFO] [stderr]    Compiling bstr v0.2.16
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling statrs v0.13.0
[INFO] [stderr]    Compiling sabreur v0.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 52s
[INFO] running `Command { std: "docker" "inspect" "8ca70a8ef881f0d4ff7f44ae255a95d159d9c0bd3601fb7005e0b40e900b3beb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8ca70a8ef881f0d4ff7f44ae255a95d159d9c0bd3601fb7005e0b40e900b3beb", kill_on_drop: false }`
[INFO] [stdout] 8ca70a8ef881f0d4ff7f44ae255a95d159d9c0bd3601fb7005e0b40e900b3beb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0ae32e8e1bffc8c5b19ac96d154c89350cccad72492c848e3d6c3c3a2c0eac14
[INFO] running `Command { std: "docker" "start" "-a" "0ae32e8e1bffc8c5b19ac96d154c89350cccad72492c848e3d6c3c3a2c0eac14", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling semver v1.0.3
[INFO] [stderr]    Compiling serde_json v1.0.64
[INFO] [stderr]    Compiling plotters-backend v0.3.2
[INFO] [stderr]    Compiling half v1.7.1
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling serde_cbor v0.11.1
[INFO] [stderr]    Compiling plotters-svg v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling cast v0.2.7
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion-plot v0.4.3
[INFO] [stderr]    Compiling criterion v0.3.4
[INFO] [stderr]    Compiling sabreur v0.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1m 39s
[INFO] running `Command { std: "docker" "inspect" "0ae32e8e1bffc8c5b19ac96d154c89350cccad72492c848e3d6c3c3a2c0eac14", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0ae32e8e1bffc8c5b19ac96d154c89350cccad72492c848e3d6c3c3a2c0eac14", kill_on_drop: false }`
[INFO] [stdout] 0ae32e8e1bffc8c5b19ac96d154c89350cccad72492c848e3d6c3c3a2c0eac14
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-87/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d66bf4c3fd42c7f7fe65ff970a03b2913e1721c8a958dca549a168b44445f6f7
[INFO] running `Command { std: "docker" "start" "-a" "d66bf4c3fd42c7f7fe65ff970a03b2913e1721c8a958dca549a168b44445f6f7", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.27s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/sabreur-1866d854074e9ef3)
[INFO] [stdout] 
[INFO] [stdout] running 22 tests
[INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_not_ok ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_ok ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_not_ok ... ok
[INFO] [stdout] test utils::tests::test_bc_cmp_ok ... ok
[INFO] [stdout] test utils::tests::test_create_relpath_from ... ok
[INFO] [stdout] test utils::tests::test_split_by_tab ... ok
[INFO] [stdout] test utils::tests::test_to_compression_ext ... ok
[INFO] [stdout] test utils::tests::test_to_niffler_format ... ok
[INFO] [stdout] test utils::tests::test_to_niffler_level ... ok
[INFO] [stdout] test utils::tests::test_read_file ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux ... ok
[INFO] [stdout] test utils::tests::test_read_file_content_is_ok ... ok
[INFO] [stdout] test utils::tests::test_write_to_fa_is_ok ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_m2 ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux ... ok
[INFO] [stdout] test utils::tests::test_write_to_fq_is_ok ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux_m1 ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_m1 ... ok
[INFO] [stdout] test utils::tests::test_se_fa_demux_trim ... ok
[INFO] [stdout] test utils::tests::test_se_fq_demux_m2 ... ok
[INFO] [stdout] test utils::tests::test_get_file_type ... ok
[INFO] [stdout] test utils::tests::test_split_by_tab_not_ok - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 22 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d66bf4c3fd42c7f7fe65ff970a03b2913e1721c8a958dca549a168b44445f6f7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d66bf4c3fd42c7f7fe65ff970a03b2913e1721c8a958dca549a168b44445f6f7", kill_on_drop: false }`
[INFO] [stdout] d66bf4c3fd42c7f7fe65ff970a03b2913e1721c8a958dca549a168b44445f6f7