[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] testing 38/pyd4 against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/38/d4-format.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-derive-backend v0.12.4 [INFO] [stderr] Downloaded pyo3cls v0.12.4 [INFO] [stderr] Downloaded pyo3 v0.12.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1cdb2a6c59c95a85f8f144bb64f17a1c952fe49318386126f4910d1a6ec8aacd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1cdb2a6c59c95a85f8f144bb64f17a1c952fe49318386126f4910d1a6ec8aacd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1cdb2a6c59c95a85f8f144bb64f17a1c952fe49318386126f4910d1a6ec8aacd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1cdb2a6c59c95a85f8f144bb64f17a1c952fe49318386126f4910d1a6ec8aacd", kill_on_drop: false }` [INFO] [stdout] 1cdb2a6c59c95a85f8f144bb64f17a1c952fe49318386126f4910d1a6ec8aacd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:eaef2f80f755933c374d2ae5edccceec0c1312ceb8a4e0b6404e8ab76561e1e5" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d553d164297cf171de6970abb3feddf8725d4480c7dc388a8ce486197da4d078 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d553d164297cf171de6970abb3feddf8725d4480c7dc388a8ce486197da4d078", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling parking_lot_core v0.8.3 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Compiling indoc v0.3.6 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-98e5fb6e9a46cefb/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-6bec5d716aeb2e0e/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-6bec5d716aeb2e0e/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5617ae44ecdd - std::backtrace_rs::backtrace::libunwind::trace::hee598835bc88d35b [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x5617ae44ecdd - std::backtrace_rs::backtrace::trace_unsynchronized::h9cdc730ba5cf5d72 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5617ae44ecdd - std::sys_common::backtrace::_print_fmt::h75aeaf7ed30e43fa [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x5617ae44ecdd - ::fmt::h606862f787600875 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x5617ae47693c - core::fmt::write::he803f0f418caf762 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/fmt/mod.rs:1190:17 [INFO] [stderr] 5: 0x5617ae44a578 - std::io::Write::write_fmt::h70bc45872f37e7bb [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/io/mod.rs:1657:15 [INFO] [stderr] 6: 0x5617ae4512a7 - std::sys_common::backtrace::_print::h64d038cf8ac3e13e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x5617ae4512a7 - std::sys_common::backtrace::print::h359300b4a7fccf65 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x5617ae4512a7 - std::panicking::default_hook::{{closure}}::hf51be35e2f510149 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x5617ae450f70 - std::panicking::default_hook::h03ca0f22e1d2d25e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x5617ae4519f9 - std::panicking::rust_panic_with_hook::h3b7380e99b825b63 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x5617ae4516a9 - std::panicking::begin_panic_handler::{{closure}}::h8e849d0710154ce0 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:586:13 [INFO] [stderr] 12: 0x5617ae44f1a4 - std::sys_common::backtrace::__rust_end_short_backtrace::hedcdaddbd4c46cc5 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x5617ae4513f9 - rust_begin_unwind [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x5617adf16af3 - core::panicking::panic_fmt::he1bbc7336d49a357 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x5617adf169bd - core::panicking::panic::h4241c5ccea17faca [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:48:5 [INFO] [stderr] 16: 0x5617adf17c5b - build_script_build::build_own_htslib::hdb7003ac638827f0 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] 17: 0x5617adf18094 - build_script_build::main::h3b8ff8b17f6adab0 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:66:9 [INFO] [stderr] 18: 0x5617adf19b9b - core::ops::function::FnOnce::call_once::h7cd3b5371b94f5eb [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x5617adf1bf3e - std::sys_common::backtrace::__rust_begin_short_backtrace::h1404b1109463307c [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 20: 0x5617adf19f21 - std::rt::lang_start::{{closure}}::h9ea9c54b71568b9f [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x5617ae44e3c1 - core::ops::function::impls:: for &F>::call_once::hb7014f43484a8b4e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x5617ae44e3c1 - std::panicking::try::do_call::h7bc9dc436daeb8c7 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stderr] 23: 0x5617ae44e3c1 - std::panicking::try::h653d68a27ff5f175 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stderr] 24: 0x5617ae44e3c1 - std::panic::catch_unwind::h9d739f9f59895e68 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stderr] 25: 0x5617ae44e3c1 - std::rt::lang_start_internal::{{closure}}::hf006f2bc7ce22bbe [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x5617ae44e3c1 - std::panicking::try::do_call::hfb39d6df61a2e69f [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stderr] 27: 0x5617ae44e3c1 - std::panicking::try::h13e2d225134958ac [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stderr] 28: 0x5617ae44e3c1 - std::panic::catch_unwind::h3bd49b5a5dfb1a50 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stderr] 29: 0x5617ae44e3c1 - std::rt::lang_start_internal::h2ba92edce36c035e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x5617adf19ef0 - std::rt::lang_start::hdd64accda08c30b9 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x5617adf186dc - main [INFO] [stderr] 32: 0x7f0c1e75a0b3 - __libc_start_main [INFO] [stderr] 33: 0x5617adf1737e - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "d553d164297cf171de6970abb3feddf8725d4480c7dc388a8ce486197da4d078", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d553d164297cf171de6970abb3feddf8725d4480c7dc388a8ce486197da4d078", kill_on_drop: false }` [INFO] [stdout] d553d164297cf171de6970abb3feddf8725d4480c7dc388a8ce486197da4d078