[INFO] cloning repository https://github.com/0ncorhynchus/pdbstat [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/0ncorhynchus/pdbstat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109 [INFO] testing 0ncorhynchus/pdbstat against 1.60.0 for beta-1.61-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-43/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-43/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain 1.60.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-43/source/Cargo.toml [INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.60.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded gcc v0.3.51 [INFO] [stderr] Downloaded cmake v0.1.24 [INFO] [stderr] Downloaded libc v0.2.24 [INFO] [stderr] Downloaded chemfiles v0.7.40 [INFO] [stderr] Downloaded chemfiles-sys v0.7.40 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3b03502dc17a27cf491de8590d48a16164bbc51f12cbb7aad51bc49c3d1df249 [INFO] running `Command { std: "docker" "start" "-a" "3b03502dc17a27cf491de8590d48a16164bbc51f12cbb7aad51bc49c3d1df249", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3b03502dc17a27cf491de8590d48a16164bbc51f12cbb7aad51bc49c3d1df249", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b03502dc17a27cf491de8590d48a16164bbc51f12cbb7aad51bc49c3d1df249", kill_on_drop: false }` [INFO] [stdout] 3b03502dc17a27cf491de8590d48a16164bbc51f12cbb7aad51bc49c3d1df249 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0c94ce3c1162fcb8e57cac5b65ec2f72eabb1eebea4fcc35e269e823f681646" "/opt/rustwide/cargo-home/bin/cargo" "+1.60.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8f4a32cfba700a07d66e394fb51b4b0c3ad5913f36f8b20bf3bb7c4e0a41b983 [INFO] running `Command { std: "docker" "start" "-a" "8f4a32cfba700a07d66e394fb51b4b0c3ad5913f36f8b20bf3bb7c4e0a41b983", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling gcc v0.3.51 [INFO] [stderr] Compiling libc v0.2.24 [INFO] [stderr] Compiling cmake v0.1.24 [INFO] [stderr] Compiling chemfiles-sys v0.7.40 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-efea640eac0cf7d1/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-f8391246fdfdfd0b/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-f8391246fdfdfd0b/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" "-j128" [INFO] [stderr] Scanning dependencies of target netcdf3-chemfiles [INFO] [stderr] Scanning dependencies of target chemfiles_files [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target tng_io_zlib [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 1%] Building C object chemfiles/external/CMakeFiles/netcdf3-chemfiles.dir/netcdf/liblib/nc_initialize.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/lammpsplugin.c.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/compress.c.o [INFO] [stderr] [ 9%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 4%] Building CXX object chemfiles/CMakeFiles/chemfiles_files.dir/src/files/NcFile.cpp.o [INFO] [stderr] 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The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at chemfiles/CMakeLists.txt:8 (cmake_policy): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:167: chemfiles/CMakeFiles/chemfiles.dir/src/Topology.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:258: chemfiles/CMakeFiles/chemfiles.dir/src/capi/residue.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:180: chemfiles/CMakeFiles/chemfiles.dir/src/Trajectory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:323: chemfiles/CMakeFiles/chemfiles.dir/src/formats/NcFormat.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:336: chemfiles/CMakeFiles/chemfiles.dir/src/formats/PDB.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:310: chemfiles/CMakeFiles/chemfiles.dir/src/formats/Molfile.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:252: chemfiles/CMakeFiles/chemfiles.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a43356502d - std::backtrace_rs::backtrace::libunwind::trace::hee598835bc88d35b [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55a43356502d - std::backtrace_rs::backtrace::trace_unsynchronized::h9cdc730ba5cf5d72 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55a43356502d - std::sys_common::backtrace::_print_fmt::h75aeaf7ed30e43fa [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x55a43356502d - ::fmt::h606862f787600875 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x55a433586c7c - core::fmt::write::he803f0f418caf762 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/fmt/mod.rs:1190:17 [INFO] [stderr] 5: 0x55a433560cc8 - std::io::Write::write_fmt::h70bc45872f37e7bb [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/io/mod.rs:1657:15 [INFO] [stderr] 6: 0x55a433566e27 - std::sys_common::backtrace::_print::h64d038cf8ac3e13e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x55a433566e27 - std::sys_common::backtrace::print::h359300b4a7fccf65 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x55a433566e27 - std::panicking::default_hook::{{closure}}::hf51be35e2f510149 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x55a433566af0 - std::panicking::default_hook::h03ca0f22e1d2d25e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x55a433567579 - std::panicking::rust_panic_with_hook::h3b7380e99b825b63 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x55a433567267 - std::panicking::begin_panic_handler::{{closure}}::h8e849d0710154ce0 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x55a4335654f4 - std::sys_common::backtrace::__rust_end_short_backtrace::hedcdaddbd4c46cc5 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x55a433566f79 - rust_begin_unwind [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x55a433516433 - core::panicking::panic_fmt::he1bbc7336d49a357 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x55a43351e8fd - cmake::fail::hfb50b6482b3a5280 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] 16: 0x55a43351e361 - cmake::run::h197eb99ef655db16 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574:9 [INFO] [stderr] 17: 0x55a43351c05d - cmake::Config::build::h69323300a48eda3e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481:9 [INFO] [stderr] 18: 0x55a433516e1b - build_script_build::main::h991c65b745fa27e2 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19:15 [INFO] [stderr] 19: 0x55a4335181eb - core::ops::function::FnOnce::call_once::h779dc290f58cf6aa [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x55a43351858e - std::sys_common::backtrace::__rust_begin_short_backtrace::hcff44b18d75a9ecf [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stderr] 21: 0x55a433518051 - std::rt::lang_start::{{closure}}::hf762b1b13475696e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:145:18 [INFO] [stderr] 22: 0x55a433564711 - core::ops::function::impls:: for &F>::call_once::hb7014f43484a8b4e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55a433564711 - std::panicking::try::do_call::h7bc9dc436daeb8c7 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stderr] 24: 0x55a433564711 - std::panicking::try::h653d68a27ff5f175 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stderr] 25: 0x55a433564711 - std::panic::catch_unwind::h9d739f9f59895e68 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x55a433564711 - std::rt::lang_start_internal::{{closure}}::hf006f2bc7ce22bbe [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x55a433564711 - std::panicking::try::do_call::hfb39d6df61a2e69f [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:492:40 [INFO] [stderr] 28: 0x55a433564711 - std::panicking::try::h13e2d225134958ac [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panicking.rs:456:19 [INFO] [stderr] 29: 0x55a433564711 - std::panic::catch_unwind::h3bd49b5a5dfb1a50 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x55a433564711 - std::rt::lang_start_internal::h2ba92edce36c035e [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x55a433518020 - std::rt::lang_start::hb1c27d03c142ab00 [INFO] [stderr] at /rustc/7737e0b5c4103216d6fd8cf941b7ab9bdbaace7c/library/std/src/rt.rs:144:17 [INFO] [stderr] 32: 0x55a4335179fc - main [INFO] [stderr] 33: 0x7f49678e30b3 - __libc_start_main [INFO] [stderr] 34: 0x55a433516bbe - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "8f4a32cfba700a07d66e394fb51b4b0c3ad5913f36f8b20bf3bb7c4e0a41b983", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8f4a32cfba700a07d66e394fb51b4b0c3ad5913f36f8b20bf3bb7c4e0a41b983", kill_on_drop: false }` [INFO] [stdout] 8f4a32cfba700a07d66e394fb51b4b0c3ad5913f36f8b20bf3bb7c4e0a41b983