[INFO] fetching crate rnafamprob 0.1.0... [INFO] testing rnafamprob-0.1.0 against beta-2022-02-22 for beta-1.60-1 [INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rnafamprob 0.1.0 [INFO] finished tweaking crates.io crate rnafamprob 0.1.0 [INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded multimap v0.4.0 [INFO] [stderr] Downloaded ucd-util v0.1.5 [INFO] [stderr] Downloaded approx v0.1.1 [INFO] [stderr] Downloaded bit-vec v0.4.4 [INFO] [stderr] Downloaded bv v0.7.4 [INFO] [stderr] Downloaded bit-set v0.4.0 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] [stderr] Downloaded rna-ss-params v0.1.13 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded bio v0.20.3 [INFO] [stderr] Downloaded ordered-float v0.5.2 [INFO] [stderr] Downloaded itertools v0.6.5 [INFO] [stderr] Downloaded bytecount v0.3.2 [INFO] [stderr] Downloaded ndarray v0.9.1 [INFO] [stderr] Downloaded bio-seq-algos v0.1.12 [INFO] [stderr] Downloaded rna-algos v0.1.10 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] be346ad20457e3a79394235fc1d6611892b0a795d6788a8b3509d940b1714e92 [INFO] running `Command { std: "docker" "start" "-a" "be346ad20457e3a79394235fc1d6611892b0a795d6788a8b3509d940b1714e92", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "be346ad20457e3a79394235fc1d6611892b0a795d6788a8b3509d940b1714e92", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "be346ad20457e3a79394235fc1d6611892b0a795d6788a8b3509d940b1714e92", kill_on_drop: false }` [INFO] [stdout] be346ad20457e3a79394235fc1d6611892b0a795d6788a8b3509d940b1714e92 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d9ab617be2b6021f41839b0368d02977a24048c10c4d2ad5aa1b4476f854b903 [INFO] running `Command { std: "docker" "start" "-a" "d9ab617be2b6021f41839b0368d02977a24048c10c4d2ad5aa1b4476f854b903", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling ucd-util v0.1.5 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling unicode-width v0.1.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling bio-seq-algos v0.1.12 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling rna-ss-params v0.1.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.10 [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.62s [INFO] running `Command { std: "docker" "inspect" "d9ab617be2b6021f41839b0368d02977a24048c10c4d2ad5aa1b4476f854b903", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d9ab617be2b6021f41839b0368d02977a24048c10c4d2ad5aa1b4476f854b903", kill_on_drop: false }` [INFO] [stdout] d9ab617be2b6021f41839b0368d02977a24048c10c4d2ad5aa1b4476f854b903 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] dc6e508d7dc100b47a7feeb44435e275594daec472686f8f11ff73352f713c41 [INFO] running `Command { std: "docker" "start" "-a" "dc6e508d7dc100b47a7feeb44435e275594daec472686f8f11ff73352f713c41", kill_on_drop: false }` [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:49:72 [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.20s [INFO] running `Command { std: "docker" "inspect" "dc6e508d7dc100b47a7feeb44435e275594daec472686f8f11ff73352f713c41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dc6e508d7dc100b47a7feeb44435e275594daec472686f8f11ff73352f713c41", kill_on_drop: false }` [INFO] [stdout] dc6e508d7dc100b47a7feeb44435e275594daec472686f8f11ff73352f713c41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 23f740b3f08890181cc7b90da8042bf85ac18fc24066c9ba0c32cb0d77ce184d [INFO] running `Command { std: "docker" "start" "-a" "23f740b3f08890181cc7b90da8042bf85ac18fc24066c9ba0c32cb0d77ce184d", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stdout] [INFO] [stderr] warning: `rnafamprob` (lib) generated 5 warnings (2 duplicates) [INFO] [stdout] running 0 tests [INFO] [stderr] warning: `rnafamprob` (lib test) generated 5 warnings (5 duplicates) [INFO] [stdout] [INFO] [stderr] warning: panic message is not a string literal [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stderr] --> src/main.rs:49:72 [INFO] [stdout] [INFO] [stderr] | [INFO] [stderr] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: add a "{}" format string to Display the message [INFO] [stderr] | [INFO] [stderr] 49 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `rnafamprob` (bin "rnafamprob" test) generated 1 warning [INFO] [stderr] warning: `rnafamprob` (bin "rnafamprob") generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rnafamprob-d3e01aa01ae9f038) [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rnafamprob-52b6871391c94180) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-9d6b1e78da55e93a) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_rnafam_program ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_rnafam_program stdout ---- [INFO] [stdout] thread 'test_rnafam_program' panicked at 'Failed to run the RNAfamProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:45 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5637709b4d9c - std::backtrace_rs::backtrace::libunwind::trace::h02555d7ca8aa068a [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x5637709b4d9c - std::backtrace_rs::backtrace::trace_unsynchronized::h8555a46024147da8 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5637709b4d9c - std::sys_common::backtrace::_print_fmt::h4c7f50b4f105da1e [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stdout] 3: 0x5637709b4d9c - ::fmt::ha305a40dbc030444 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stdout] 4: 0x5637709da1bc - core::fmt::write::hadd15acf4d6ce273 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/fmt/mod.rs:1190:17 [INFO] [stdout] 5: 0x5637709b0698 - std::io::Write::write_fmt::h271050faa79d27d2 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/io/mod.rs:1657:15 [INFO] [stdout] 6: 0x5637709b7067 - std::sys_common::backtrace::_print::h0dd5c0810675bd8c [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stdout] 7: 0x5637709b7067 - std::sys_common::backtrace::print::h20a2155fa0a22ca6 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stdout] 8: 0x5637709b7067 - std::panicking::default_hook::{{closure}}::habb3b6f3ccdfe00a [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:295:22 [INFO] [stdout] 9: 0x5637709b6d9b - std::panicking::default_hook::h1c5cf4d5063a38e4 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:311:9 [INFO] [stdout] 10: 0x5637709b77ba - std::panicking::rust_panic_with_hook::hb5de7a3072d2cf59 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:698:17 [INFO] [stdout] 11: 0x5637709b74a7 - std::panicking::begin_panic_handler::{{closure}}::h5106de2f55f1a411 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:588:13 [INFO] [stdout] 12: 0x5637709b5264 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ad5c2a8a003ca72 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stdout] 13: 0x5637709b71b9 - rust_begin_unwind [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:584:5 [INFO] [stdout] 14: 0x563770958123 - core::panicking::panic_fmt::hfb4b8460cd493e74 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/panicking.rs:143:14 [INFO] [stdout] 15: 0x563770958213 - core::result::unwrap_failed::hf9b34e307f812de0 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/result.rs:1749:5 [INFO] [stdout] 16: 0x56377095d9bc - core::result::Result::expect::h4c45320f29103a05 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/result.rs:1022:23 [INFO] [stdout] 17: 0x56377095a562 - tests::run_command::h5e31f03ab75f0d0d [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:19:3 [INFO] [stdout] 18: 0x56377095a66d - tests::test_rnafam_program::hc8175a28bfdd759b [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:12:3 [INFO] [stdout] 19: 0x56377095a59a - tests::test_rnafam_program::{{closure}}::h91e9d371be4b4129 [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:8:1 [INFO] [stdout] 20: 0x56377095c19e - core::ops::function::FnOnce::call_once::h964447408d23dab3 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x563770989183 - core::ops::function::FnOnce::call_once::h43953c8a8f54893f [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x563770989183 - test::__rust_begin_short_backtrace::h163f55298a15df9b [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/test/src/lib.rs:575:5 [INFO] [stdout] 23: 0x563770987eb1 - as core::ops::function::FnOnce>::call_once::hc911782b3cbc7ed5 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 24: 0x563770987eb1 - as core::ops::function::FnOnce<()>>::call_once::hc5bb369afbf9cd4e [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x563770987eb1 - std::panicking::try::do_call::he60df4e3e832faff [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stdout] 26: 0x563770987eb1 - std::panicking::try::h2633cee89a0767f3 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stdout] 27: 0x563770987eb1 - std::panic::catch_unwind::h6e10f7b94ce38b1e [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stdout] 28: 0x563770987eb1 - test::run_test_in_process::h085ef39049c3b50b [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/test/src/lib.rs:598:18 [INFO] [stdout] 29: 0x563770987eb1 - test::run_test::run_test_inner::{{closure}}::h4e58ce9f68eb43e4 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/test/src/lib.rs:492:39 [INFO] [stdout] 30: 0x563770991791 - test::run_test::run_test_inner::{{closure}}::h6d18db28c5e396ee [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/test/src/lib.rs:519:37 [INFO] [stdout] 31: 0x563770991791 - std::sys_common::backtrace::__rust_begin_short_backtrace::h32292cb2cd8be620 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:122:18 [INFO] [stdout] 32: 0x56377095deef - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h71ee66b20f7b0482 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/thread/mod.rs:498:17 [INFO] [stdout] 33: 0x56377095deef - as core::ops::function::FnOnce<()>>::call_once::hb6046e1d1a75a4a4 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x56377095deef - std::panicking::try::do_call::h5422165a88309c77 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stdout] 35: 0x56377095deef - std::panicking::try::h840a12b54e2c9f5d [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stdout] 36: 0x56377095deef - std::panic::catch_unwind::h85910e437c8da180 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stdout] 37: 0x56377095deef - std::thread::Builder::spawn_unchecked_::{{closure}}::ha3af3a297bfd51d6 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/thread/mod.rs:497:30 [INFO] [stdout] 38: 0x56377095deef - core::ops::function::FnOnce::call_once{{vtable.shim}}::hff8788f58e0e06a9 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x5637709bd533 - as core::ops::function::FnOnce>::call_once::h82a18723295373b7 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 40: 0x5637709bd533 - as core::ops::function::FnOnce>::call_once::h4b9b8634f7a2a5a4 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/alloc/src/boxed.rs:1854:9 [INFO] [stdout] 41: 0x5637709bd533 - std::sys::unix::thread::Thread::new::thread_start::h3dc341aa024c6852 [INFO] [stdout] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys/unix/thread.rs:108:17 [INFO] [stdout] 42: 0x7f8440a65609 - start_thread [INFO] [stdout] 43: 0x7f8440837293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_rnafam_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] running `Command { std: "docker" "inspect" "23f740b3f08890181cc7b90da8042bf85ac18fc24066c9ba0c32cb0d77ce184d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "23f740b3f08890181cc7b90da8042bf85ac18fc24066c9ba0c32cb0d77ce184d", kill_on_drop: false }` [INFO] [stdout] 23f740b3f08890181cc7b90da8042bf85ac18fc24066c9ba0c32cb0d77ce184d