[INFO] fetching crate psdm 0.1.0...
[INFO] testing psdm-0.1.0 against beta-2022-02-22 for beta-1.60-1
[INFO] extracting crate psdm 0.1.0 into /workspace/builds/worker-28/source
[INFO] validating manifest of crates.io crate psdm 0.1.0 on toolchain beta-2022-02-22
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate psdm 0.1.0
[INFO] finished tweaking crates.io crate psdm 0.1.0
[INFO] tweaked toml for crates.io crate psdm 0.1.0 written to /workspace/builds/worker-28/source/Cargo.toml
[INFO] crate crates.io crate psdm 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-sam v0.6.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.4.0
[INFO] [stderr]   Downloaded noodles-core v0.2.3
[INFO] [stderr]   Downloaded noodles-fasta v0.3.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0b5b5e0210223faa13bfaea5a1b71038b19d6450d009d5f97f680030fdac837f
[INFO] running `Command { std: "docker" "start" "-a" "0b5b5e0210223faa13bfaea5a1b71038b19d6450d009d5f97f680030fdac837f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0b5b5e0210223faa13bfaea5a1b71038b19d6450d009d5f97f680030fdac837f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0b5b5e0210223faa13bfaea5a1b71038b19d6450d009d5f97f680030fdac837f", kill_on_drop: false }`
[INFO] [stdout] 0b5b5e0210223faa13bfaea5a1b71038b19d6450d009d5f97f680030fdac837f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e4e58410824ea5e1e675754662772e07eeec98f46afd7d36d59d485fe49f2d16
[INFO] running `Command { std: "docker" "start" "-a" "e4e58410824ea5e1e675754662772e07eeec98f46afd7d36d59d485fe49f2d16", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.105
[INFO] [stderr]    Compiling proc-macro2 v1.0.32
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling cc v1.0.71
[INFO] [stderr]    Compiling pkg-config v0.3.22
[INFO] [stderr]    Compiling syn v1.0.81
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling once_cell v1.8.0
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling matrixmultiply v0.3.1
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling env_logger v0.9.0
[INFO] [stderr]    Compiling console v0.15.0
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling noodles-bgzf v0.4.0
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling noodles-sam v0.6.0
[INFO] [stderr]    Compiling ndarray v0.15.3
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling noodles-core v0.2.3
[INFO] [stderr]    Compiling noodles-fasta v0.3.1
[INFO] [stderr]    Compiling indicatif v0.16.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling structopt v0.3.25
[INFO] [stderr]    Compiling bgzip v0.2.1
[INFO] [stderr]    Compiling niffler v2.3.2
[INFO] [stderr]    Compiling psdm v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 12.08s
[INFO] running `Command { std: "docker" "inspect" "e4e58410824ea5e1e675754662772e07eeec98f46afd7d36d59d485fe49f2d16", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e4e58410824ea5e1e675754662772e07eeec98f46afd7d36d59d485fe49f2d16", kill_on_drop: false }`
[INFO] [stdout] e4e58410824ea5e1e675754662772e07eeec98f46afd7d36d59d485fe49f2d16
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 671a5cd3802bb4cf3314355bf59f09169f3535c641f24b4fcbcb230ec20008b4
[INFO] running `Command { std: "docker" "start" "-a" "671a5cd3802bb4cf3314355bf59f09169f3535c641f24b4fcbcb230ec20008b4", kill_on_drop: false }`
[INFO] [stderr]    Compiling predicates-core v1.0.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.15
[INFO] [stderr]    Compiling termtree v0.2.3
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling predicates-tree v1.0.4
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling predicates v2.0.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling assert_cmd v2.0.2
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling psdm v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3.15s
[INFO] running `Command { std: "docker" "inspect" "671a5cd3802bb4cf3314355bf59f09169f3535c641f24b4fcbcb230ec20008b4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "671a5cd3802bb4cf3314355bf59f09169f3535c641f24b4fcbcb230ec20008b4", kill_on_drop: false }`
[INFO] [stdout] 671a5cd3802bb4cf3314355bf59f09169f3535c641f24b4fcbcb230ec20008b4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-28/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 347621c815b1c3a1b67c60b52a56c2fc1420cda643261af7a880a7399a13f0fb
[INFO] running `Command { std: "docker" "start" "-a" "347621c815b1c3a1b67c60b52a56c2fc1420cda643261af7a880a7399a13f0fb", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/psdm-48ea956370be0b06)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test tests::alignments_all_have_same_length ... ok
[INFO] [stdout] test tests::alignments_do_not_all_have_same_length ... ok
[INFO] [stdout] test tests::alignments_sorted_by_id ... ok
[INFO] [stdout] test tests::alignments_do_not_have_same_length_as_starting_seqlen ... ok
[INFO] [stdout] test tests::argsort ... ok
[INFO] [stdout] test tests::argsort_on_empty ... ok
[INFO] [stdout] test tests::argsort_with_str ... ok
[INFO] [stdout] test tests::parse_chars ... ok
[INFO] [stdout] test tests::sort_by_index ... ok
[INFO] [stdout] test tests::transform_ignore_case ... ok
[INFO] [stdout] test tests::transform_ignore_chars ... ok
[INFO] [stdout] test tests::transform_ignore_chars_case_insensitive ... ok
[INFO] [stdout] test tests::transform_ignore_chars_case_sensitive ... ok
[INFO] [stdout] test tests::test_hamming_distance ... ok
[INFO] [stdout] test tests::transform_preserve_case ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/psdm-b5b00aface3897a2)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test tests::check_path_exists_it_doesnt ... ok
[INFO] [stdout] test tests::check_path_it_does ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/main.rs (/opt/rustwide/target/debug/deps/main-d4278c9daf3a2e47)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test intra_alignment_with_defaults ... ok
[INFO] [stdout] test inter_alignment_in_long_form_sorted ... ok
[INFO] [stdout] test alignment_files_do_not_have_same_length ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters_sorted ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_no_characters ... ok
[INFO] [stdout] test inter_alignment_with_tab_delim ... ok
[INFO] [stdout] test input_file_does_not_exist ... ok
[INFO] [stdout] test alignment_seqs_do_not_have_same_length ... ok
[INFO] [stdout] test intra_alignment_with_use_case_ignore_characters ... ok
[INFO] [stdout] test intra_alignment_with_defaults_long_form_sorted ... ok
[INFO] [stdout] test alignment_is_not_fasta ... ok
[INFO] [stdout] test intra_alignment_with_defaults_long_form ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters ... ok
[INFO] [stdout] test more_than_two_input_files_fails ... ok
[INFO] [stdout] test trying_to_create_output_in_nonexistent_dir ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests psdm
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "347621c815b1c3a1b67c60b52a56c2fc1420cda643261af7a880a7399a13f0fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "347621c815b1c3a1b67c60b52a56c2fc1420cda643261af7a880a7399a13f0fb", kill_on_drop: false }`
[INFO] [stdout] 347621c815b1c3a1b67c60b52a56c2fc1420cda643261af7a880a7399a13f0fb