[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against beta-2022-02-22 for beta-1.60-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain beta-2022-02-22 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-02-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 02321e563dce18da1cde2455c0e4a2eba086c7a4c5ea262466aa27d0b9130fe8 [INFO] running `Command { std: "docker" "start" "-a" "02321e563dce18da1cde2455c0e4a2eba086c7a4c5ea262466aa27d0b9130fe8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "02321e563dce18da1cde2455c0e4a2eba086c7a4c5ea262466aa27d0b9130fe8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "02321e563dce18da1cde2455c0e4a2eba086c7a4c5ea262466aa27d0b9130fe8", kill_on_drop: false }` [INFO] [stdout] 02321e563dce18da1cde2455c0e4a2eba086c7a4c5ea262466aa27d0b9130fe8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0cd99ca24d8e8c98e67c542213511d985b8778b5bdcbb160e038429496686047" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-02-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 33fc780dbd86ab830cccb1c5e3cdebf25a5800a1406d123d3cde23156855140f [INFO] running `Command { std: "docker" "start" "-a" "33fc780dbd86ab830cccb1c5e3cdebf25a5800a1406d123d3cde23156855140f", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-dbbbcb1980d6f73e/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-9389d78ee739b4eb/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-9389d78ee739b4eb/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x555e8d9bea5c - std::backtrace_rs::backtrace::libunwind::trace::h02555d7ca8aa068a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x555e8d9bea5c - std::backtrace_rs::backtrace::trace_unsynchronized::h8555a46024147da8 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x555e8d9bea5c - std::sys_common::backtrace::_print_fmt::h4c7f50b4f105da1e [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x555e8d9bea5c - ::fmt::ha305a40dbc030444 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x555e8d9e177c - core::fmt::write::hadd15acf4d6ce273 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/fmt/mod.rs:1190:17 [INFO] [stderr] 5: 0x555e8d9ba3d8 - std::io::Write::write_fmt::h0f87f6c0c21ec48a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/io/mod.rs:1657:15 [INFO] [stderr] 6: 0x555e8d9c0c47 - std::sys_common::backtrace::_print::h0dd5c0810675bd8c [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x555e8d9c0c47 - std::sys_common::backtrace::print::h20a2155fa0a22ca6 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x555e8d9c0c47 - std::panicking::default_hook::{{closure}}::habb3b6f3ccdfe00a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x555e8d9c090f - std::panicking::default_hook::h1c5cf4d5063a38e4 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x555e8d9c139a - std::panicking::rust_panic_with_hook::hb5de7a3072d2cf59 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x555e8d9c1087 - std::panicking::begin_panic_handler::{{closure}}::h5106de2f55f1a411 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x555e8d9bef24 - std::sys_common::backtrace::__rust_end_short_backtrace::h5ad5c2a8a003ca72 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x555e8d9c0d99 - rust_begin_unwind [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x555e8d94d433 - core::panicking::panic_fmt::hfb4b8460cd493e74 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/panicking.rs:143:14 [INFO] [stderr] 15: 0x555e8d95af3d - cmake::fail::h8a189f226ea2a77a [INFO] [stderr] 16: 0x555e8d95a9aa - cmake::run::heec731a6e69cd03d [INFO] [stderr] 17: 0x555e8d956fe1 - cmake::Config::build::h3f80137cc47c555d [INFO] [stderr] 18: 0x555e8d95070a - build_script_build::main::h27f8d97b7834a3c1 [INFO] [stderr] 19: 0x555e8d951ac3 - core::ops::function::FnOnce::call_once::he6771abd70b4fcff [INFO] [stderr] 20: 0x555e8d952009 - std::sys_common::backtrace::__rust_begin_short_backtrace::h26ed736c8bfe1458 [INFO] [stderr] 21: 0x555e8d951a09 - std::rt::lang_start::{{closure}}::hdd13dbcf37c16893 [INFO] [stderr] 22: 0x555e8d9be141 - core::ops::function::impls:: for &F>::call_once::h9e134bb161d17658 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x555e8d9be141 - std::panicking::try::do_call::h7f361d911648db1a [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stderr] 24: 0x555e8d9be141 - std::panicking::try::hbe441b12f8ff00e7 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stderr] 25: 0x555e8d9be141 - std::panic::catch_unwind::h12066b7ab56d7459 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x555e8d9be141 - std::rt::lang_start_internal::{{closure}}::h901c86e61467dcde [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x555e8d9be141 - std::panicking::try::do_call::h1817b5f028d90a8c [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:492:40 [INFO] [stderr] 28: 0x555e8d9be141 - std::panicking::try::hd5afeaf2f0454960 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panicking.rs:456:19 [INFO] [stderr] 29: 0x555e8d9be141 - std::panic::catch_unwind::h13348562ae6426ca [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x555e8d9be141 - std::rt::lang_start_internal::hf194c7db73fedcb2 [INFO] [stderr] at /rustc/0a4f984a87c7ba6c74ec3e78442fec955a419e32/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x555e8d9519f1 - std::rt::lang_start::hc4e48d79fcc80337 [INFO] [stderr] 32: 0x555e8d951193 - main [INFO] [stderr] 33: 0x7f63b38d10b3 - __libc_start_main [INFO] [stderr] 34: 0x555e8d94dbbe - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "33fc780dbd86ab830cccb1c5e3cdebf25a5800a1406d123d3cde23156855140f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "33fc780dbd86ab830cccb1c5e3cdebf25a5800a1406d123d3cde23156855140f", kill_on_drop: false }` [INFO] [stdout] 33fc780dbd86ab830cccb1c5e3cdebf25a5800a1406d123d3cde23156855140f